Wall clock time and date at job start Fri Apr 10 2020 17:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48497 * 109.47335 * 270.00644 * 3 2 1 5 5 H 1.48499 * 109.47299 * 30.00896 * 3 2 1 6 6 H 1.48501 * 109.46878 * 150.00406 * 3 2 1 7 7 C 1.38811 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99850 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00252 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00417 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.46180 * 155.00055 * 10 9 7 12 12 C 1.53191 * 109.31261 * 181.38737 * 11 10 9 13 13 N 1.46926 * 108.77451 * 305.36750 * 12 11 10 14 14 C 1.34780 * 120.62707 * 233.58792 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 14 19 19 H 1.09005 * 110.43932 * 305.70172 * 18 17 16 20 20 C 1.54806 * 110.49244 * 183.15344 * 18 17 16 21 21 C 1.55222 * 101.99262 * 220.51859 * 20 18 17 22 22 O 1.44379 * 103.56402 * 36.88361 * 21 20 18 23 23 C 1.43742 * 106.97332 * 320.01051 * 22 21 20 24 24 C 1.46921 * 118.74177 * 53.86188 * 13 12 11 25 25 C 1.53041 * 109.45995 * 275.07404 * 10 9 7 26 26 H 0.97008 * 120.00047 * 359.97438 * 1 2 3 27 27 H 0.97008 * 119.99686 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.44479 * 35.03398 * 10 9 7 29 29 H 1.09002 * 109.49670 * 61.43682 * 11 10 9 30 30 H 1.09002 * 109.52529 * 301.35888 * 11 10 9 31 31 H 1.09003 * 109.58572 * 185.57865 * 12 11 10 32 32 H 1.08997 * 109.58641 * 65.15588 * 12 11 10 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 36 36 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 37 37 H 1.08999 * 110.90961 * 338.64307 * 20 18 17 38 38 H 1.09000 * 110.90701 * 102.24332 * 20 18 17 39 39 H 1.08997 * 110.52135 * 278.38716 * 21 20 18 40 40 H 1.09004 * 110.77955 * 155.50028 * 21 20 18 41 41 H 1.09004 * 109.88221 * 267.08729 * 23 22 21 42 42 H 1.08999 * 109.88153 * 145.93833 * 23 22 21 43 43 H 1.08998 * 109.58542 * 65.92391 * 24 13 12 44 44 H 1.08999 * 109.58977 * 186.35239 * 24 13 12 45 45 H 1.08999 * 109.49703 * 298.55965 * 25 10 9 46 46 H 1.08993 * 109.50252 * 58.62459 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.4993 -2.2588 -0.6115 12 6 6.2492 -3.5942 -0.6415 13 7 6.2667 -4.1575 0.7154 14 6 7.4291 -4.5189 1.2939 15 8 8.4739 -4.3809 0.6937 16 6 7.4304 -5.0957 2.6862 17 6 8.8666 -5.4195 3.1027 18 6 8.8681 -6.0044 4.5164 19 1 8.3557 -5.3339 5.2063 20 6 10.3174 -6.2675 4.9925 21 6 10.1752 -7.6309 5.7208 22 8 9.2118 -8.3453 4.9170 23 6 8.2061 -7.3960 4.5250 24 6 4.9924 -4.3248 1.4273 25 6 4.2570 -2.9760 1.4363 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3621 -0.0007 28 1 3.5645 -3.2061 -0.5907 29 1 6.0565 -1.5421 -0.0081 30 1 5.3959 -1.8766 -1.6270 31 1 7.2716 -3.4316 -0.9829 32 1 5.7417 -4.2832 -1.3167 33 1 7.0052 -4.3707 3.3802 34 1 6.8335 -6.0076 2.7023 35 1 9.2915 -6.1446 2.4086 36 1 9.4639 -4.5079 3.0865 37 1 10.9969 -6.3491 4.1440 38 1 10.6482 -5.4894 5.6804 39 1 9.7982 -7.4858 6.7331 40 1 11.1277 -8.1606 5.7394 41 1 7.3836 -7.4108 5.2401 42 1 7.8374 -7.6372 3.5280 43 1 4.3844 -5.0721 0.9174 44 1 5.1851 -4.6443 2.4514 45 1 4.8260 -2.2526 2.0204 46 1 3.2690 -3.1040 1.8784 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990904042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:57 Heat of formation + Delta-G solvation = -104.161701 kcal Electronic energy + Delta-G solvation = -24208.042838 eV Core-core repulsion = 20710.321219 eV Total energy + Delta-G solvation = -3497.721619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30094 -40.30687 -38.81323 -36.24081 -35.49771 -33.94235 -32.51765 -31.58332 -31.36776 -29.41800 -26.77598 -25.44935 -24.29726 -23.83913 -23.02735 -21.72245 -21.12649 -20.11564 -19.36849 -18.23209 -17.60063 -17.02691 -16.72110 -16.62106 -16.51153 -15.89795 -15.79108 -15.20464 -15.01993 -14.95879 -14.63280 -14.37056 -14.29739 -14.01477 -13.62119 -13.42612 -13.25985 -12.94775 -12.93795 -12.67794 -12.54255 -12.28443 -12.19311 -12.12945 -11.97043 -11.84356 -11.78263 -11.63206 -11.47297 -11.33392 -10.98312 -10.74139 -10.56452 -9.66487 -9.30392 -8.01419 -5.34278 1.37999 1.40094 1.47310 1.64372 2.03952 2.48557 3.07418 3.29861 3.45532 3.55362 3.57171 3.84639 3.91207 3.97871 4.07902 4.14353 4.22241 4.25955 4.32338 4.33215 4.40092 4.46302 4.58269 4.63348 4.68195 4.77120 4.82653 4.83885 4.86874 4.88119 4.93957 4.99997 5.01793 5.07715 5.12240 5.23386 5.28548 5.36344 5.48237 5.62773 5.78876 5.98358 6.22850 6.45240 7.08696 7.18285 7.85588 8.03534 9.19906 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.002719 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.445231 B =10296.741357 C =10570.940843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.223 4.223 8 H 0.062 0.938 9 N -0.754 5.754 10 C 0.174 3.826 11 C -0.131 4.131 12 C 0.120 3.880 13 N -0.610 5.610 14 C 0.509 3.491 15 O -0.589 6.589 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.118 4.118 19 H 0.102 0.898 20 C -0.151 4.151 21 C 0.041 3.959 22 O -0.409 6.409 23 C 0.043 3.957 24 C 0.114 3.886 25 C -0.143 4.143 26 H 0.256 0.744 27 H 0.363 0.637 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.055 0.945 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.186 -13.953 11.022 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.780 3.220 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.180 1.180 7 C -0.354 4.354 8 H 0.080 0.920 9 N -0.396 5.396 10 C 0.067 3.933 11 C -0.170 4.170 12 C -0.004 4.004 13 N -0.342 5.342 14 C 0.299 3.701 15 O -0.470 6.470 16 C -0.177 4.177 17 C -0.125 4.125 18 C -0.136 4.136 19 H 0.121 0.879 20 C -0.189 4.189 21 C -0.035 4.035 22 O -0.329 6.329 23 C -0.033 4.033 24 C -0.008 4.008 25 C -0.184 4.184 26 H 0.065 0.935 27 H 0.195 0.805 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.132 0.868 45 H 0.074 0.926 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.507 -14.190 10.638 27.113 hybrid contribution -0.236 1.638 -0.277 1.678 sum 20.271 -12.552 10.361 25.997 Atomic orbital electron populations 1.69872 1.07018 1.26503 1.60045 1.25448 0.96034 1.01029 1.03105 0.85459 0.78554 0.80130 0.77884 1.20789 1.22522 1.17959 1.19027 0.82480 0.93404 1.40497 0.92030 1.42863 1.02524 1.03946 1.90282 1.20414 0.90964 0.87237 0.94720 1.22102 0.95446 0.97605 1.01812 1.21486 1.01342 0.93932 0.83599 1.48306 1.07298 1.61973 1.16662 1.21340 0.82344 0.77014 0.89367 1.90658 1.32586 1.57165 1.66598 1.21836 1.00150 1.03635 0.92051 1.21278 0.95034 1.01006 0.95162 1.22586 0.96734 0.97143 0.97162 0.87940 1.23251 0.96448 0.98093 1.01066 1.23756 0.93158 0.91989 0.94644 1.88844 1.38336 1.35025 1.70684 1.23455 0.91236 0.87546 1.01088 1.21998 0.83182 0.96860 0.98787 1.22513 1.00219 0.96856 0.98780 0.93471 0.80466 0.93343 0.92398 0.90474 0.89858 0.90256 0.86669 0.86600 0.92614 0.91999 0.91129 0.88537 0.91003 0.88375 0.90968 0.89785 0.90007 0.86758 0.92593 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.96 13.97 21.65 0.30 -61.66 16 2 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.95 44.95 27.74 68.60 1.90 46.86 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 7 C -0.22 -12.18 10.41 84.03 0.87 -11.31 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 9 N -0.75 -33.44 4.92 -322.82 -1.59 -35.03 16 10 C 0.17 5.99 2.73 45.02 0.12 6.11 16 11 C -0.13 -3.75 5.55 30.67 0.17 -3.58 16 12 C 0.12 3.00 6.43 86.36 0.56 3.55 16 13 N -0.61 -14.08 2.97 -818.07 -2.43 -16.51 16 14 C 0.51 12.06 7.70 87.66 0.67 12.73 16 15 O -0.59 -18.57 15.40 -3.03 -0.05 -18.62 16 16 C -0.14 -2.03 3.89 29.85 0.12 -1.92 16 17 C -0.09 -1.38 3.70 30.59 0.11 -1.26 16 18 C -0.12 -1.39 3.06 -9.81 -0.03 -1.42 16 19 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 20 C -0.15 -1.72 6.73 31.97 0.22 -1.51 16 21 C 0.04 0.50 7.72 72.74 0.56 1.06 16 22 O -0.41 -7.54 11.52 -148.98 -1.72 -9.25 16 23 C 0.04 0.58 6.94 72.36 0.50 1.09 16 24 C 0.11 2.29 6.37 86.51 0.55 2.84 16 25 C -0.14 -4.11 5.67 30.82 0.17 -3.93 16 26 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 27 H 0.36 15.78 5.66 -92.70 -0.52 15.26 16 28 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.08 2.23 7.01 -2.39 -0.02 2.21 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.12 1.31 7.70 -2.39 -0.02 1.29 16 34 H 0.12 1.23 6.78 -2.39 -0.02 1.21 16 35 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.07 0.94 7.87 -2.39 -0.02 0.92 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.08 1.13 6.82 -2.39 -0.02 1.11 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.11 1.54 5.93 -2.39 -0.01 1.53 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -72.50 357.62 1.87 -70.64 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.37 Total: 24.40 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.07 Total: -0.82 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -3.71 Total: -113.20 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.76 Total: -27.87 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.86 kcal Total: -72.50 1.87 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990904042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.526 kcal (2) G-P(sol) polarization free energy of solvation -72.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds