Wall clock time and date at job start Fri Apr 10 2020 17:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53045 * 109.45813 * 275.06811 * 10 9 7 12 12 C 1.53194 * 109.31101 * 178.61864 * 11 10 9 13 13 N 1.46920 * 108.77644 * 54.63136 * 12 11 10 14 14 C 1.34773 * 120.62930 * 126.41851 * 13 12 11 15 15 O 1.21285 * 120.00504 * 179.97438 * 14 13 12 16 16 C 1.50707 * 120.00047 * 359.97302 * 14 13 12 17 17 C 1.53003 * 109.47050 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46622 * 180.02562 * 17 16 14 19 19 H 1.09002 * 110.45749 * 54.30336 * 18 17 16 20 20 C 1.54518 * 110.50902 * 176.90758 * 18 17 16 21 21 C 1.54472 * 104.06350 * 118.64480 * 20 18 17 22 22 O 1.44426 * 104.80412 * 23.97958 * 21 20 18 23 23 C 1.44647 * 105.37022 * 319.56359 * 22 21 20 24 24 C 1.46923 * 118.74320 * 306.39321 * 13 12 11 25 25 C 1.53038 * 109.45776 * 155.00227 * 10 9 7 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.08991 * 109.45767 * 35.02510 * 10 9 7 29 29 H 1.09007 * 109.49596 * 298.56293 * 11 10 9 30 30 H 1.08994 * 109.49915 * 58.66054 * 11 10 9 31 31 H 1.09000 * 109.57934 * 294.84389 * 12 11 10 32 32 H 1.08996 * 109.70220 * 174.49403 * 12 11 10 33 33 H 1.08998 * 109.47252 * 300.00189 * 16 14 13 34 34 H 1.08997 * 109.46459 * 60.00231 * 16 14 13 35 35 H 1.08998 * 109.47282 * 300.00213 * 17 16 14 36 36 H 1.08997 * 109.46612 * 60.00395 * 17 16 14 37 37 H 1.08995 * 110.50982 * 237.29035 * 20 18 17 38 38 H 1.08997 * 110.50675 * 359.86519 * 20 18 17 39 39 H 1.08999 * 110.37697 * 142.80673 * 21 20 18 40 40 H 1.09000 * 110.37634 * 265.15192 * 21 20 18 41 41 H 1.09004 * 110.34013 * 281.59230 * 23 22 21 42 42 H 1.08996 * 110.50840 * 159.18677 * 23 22 21 43 43 H 1.09007 * 109.58482 * 293.82586 * 24 13 12 44 44 H 1.08998 * 109.59242 * 173.39600 * 24 13 12 45 45 H 1.09000 * 109.49607 * 301.33212 * 25 10 9 46 46 H 1.09001 * 109.50254 * 61.43672 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 2.4232 -4.0270 -1.4528 12 6 3.2187 -5.3362 -1.4529 13 7 2.4412 -6.3621 -0.7447 14 6 2.1732 -7.5462 -1.3297 15 8 1.5306 -8.3852 -0.7345 16 6 2.6719 -7.8280 -2.7237 17 6 2.2344 -9.2315 -3.1479 18 6 2.7413 -9.5177 -4.5628 19 1 3.8187 -9.3620 -4.6203 20 6 2.3791 -10.9588 -4.9864 21 6 1.4692 -10.7699 -6.2204 22 8 1.8274 -9.4740 -6.7480 23 6 2.0100 -8.6259 -5.5906 24 6 1.9617 -6.0728 0.6137 25 6 1.1802 -4.7553 0.5906 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.9683 -3.5535 0.5769 29 1 1.5124 -4.1548 -2.0379 30 1 3.0288 -3.2333 -1.8901 31 1 4.1715 -5.1847 -0.9455 32 1 3.3981 -5.6571 -2.4789 33 1 2.2566 -7.0935 -3.4136 34 1 3.7601 -7.7667 -2.7394 35 1 2.6501 -9.9657 -2.4579 36 1 1.1463 -9.2931 -3.1319 37 1 3.2771 -11.5148 -5.2556 38 1 1.8411 -11.4680 -4.1869 39 1 1.6648 -11.5474 -6.9588 40 1 0.4204 -10.7821 -5.9239 41 1 1.0442 -8.3078 -5.1978 42 1 2.6212 -7.7598 -5.8444 43 1 2.8121 -5.9814 1.2896 44 1 1.3095 -6.8786 0.9504 45 1 0.9012 -4.4800 1.6077 46 1 0.2812 -4.8763 -0.0138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990904044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:00 Heat of formation + Delta-G solvation = -107.498165 kcal Electronic energy + Delta-G solvation = -24212.183179 eV Core-core repulsion = 20714.316880 eV Total energy + Delta-G solvation = -3497.866299 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28302 -40.29350 -38.74966 -36.13262 -35.49538 -33.84338 -32.43884 -31.50364 -30.94250 -29.40244 -26.73635 -25.46639 -24.37296 -23.97250 -23.19871 -21.58451 -21.11861 -19.93245 -19.04171 -18.17612 -17.43258 -16.88406 -16.75047 -16.63722 -16.42833 -16.09178 -15.47016 -15.40620 -15.12539 -14.94423 -14.76642 -14.39375 -14.03565 -13.70365 -13.57024 -13.29089 -13.12387 -13.08461 -12.87385 -12.61645 -12.46446 -12.35665 -12.16771 -12.10208 -12.00271 -11.81579 -11.69680 -11.58216 -11.38009 -11.30017 -10.95379 -10.73758 -10.71665 -9.64499 -9.00542 -7.93222 -5.21907 1.48664 1.49017 1.58872 1.65267 2.05649 2.57070 3.06947 3.40402 3.52183 3.61336 3.80857 3.83906 3.92067 4.02059 4.11895 4.16199 4.19342 4.26130 4.33804 4.37450 4.42235 4.45827 4.60292 4.66932 4.69180 4.81119 4.84006 4.84367 4.86782 4.88093 4.93440 5.02946 5.06346 5.07544 5.11040 5.23643 5.32453 5.38696 5.50828 5.55522 5.65071 5.87372 6.28626 6.47180 7.19322 7.34494 8.10520 8.33130 9.30785 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.002797 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.345229 B =10008.125787 C =10744.316132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.298 1.298 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.740 5.740 10 C 0.172 3.828 11 C -0.142 4.142 12 C 0.115 3.885 13 N -0.610 5.610 14 C 0.508 3.492 15 O -0.590 6.590 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.114 4.114 19 H 0.100 0.900 20 C -0.150 4.150 21 C 0.037 3.963 22 O -0.404 6.404 23 C 0.040 3.960 24 C 0.122 3.878 25 C -0.128 4.128 26 H 0.249 0.751 27 H 0.369 0.631 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 -21.518 -9.210 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.225 1.225 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.379 5.379 10 C 0.064 3.936 11 C -0.183 4.183 12 C -0.008 4.008 13 N -0.342 5.342 14 C 0.299 3.701 15 O -0.471 6.471 16 C -0.176 4.176 17 C -0.125 4.125 18 C -0.133 4.133 19 H 0.118 0.882 20 C -0.188 4.188 21 C -0.039 4.039 22 O -0.323 6.323 23 C -0.036 4.036 24 C -0.002 4.002 25 C -0.167 4.167 26 H 0.058 0.942 27 H 0.200 0.800 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.141 0.859 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.345 -21.768 -9.107 25.379 hybrid contribution -0.680 1.351 0.462 1.581 sum 8.666 -20.417 -8.645 23.805 Atomic orbital electron populations 1.69835 1.06750 1.25822 1.60044 1.25565 0.96302 1.01147 1.04202 0.85104 0.78467 0.80005 0.76400 1.18606 1.22353 1.22506 1.19672 0.91516 0.85000 1.40156 0.90154 1.42697 1.05379 1.01154 1.88641 1.20431 0.94205 0.84519 0.94426 1.22457 0.99934 0.96927 0.98975 1.21923 0.93949 0.86074 0.98820 1.48305 1.53967 1.15482 1.16456 1.21371 0.78747 0.80656 0.89373 1.90654 1.42402 1.47078 1.66960 1.21819 1.04489 0.99659 0.91645 1.21306 1.00745 0.95286 0.95142 1.22545 1.01867 0.94926 0.93955 0.88155 1.23014 1.00912 0.96848 0.98030 1.23570 0.98394 0.85677 0.96294 1.89123 1.90469 1.22426 1.30307 1.23751 0.99901 0.94543 0.85416 1.21471 0.98902 0.96118 0.83662 1.22056 0.98557 0.94792 1.01284 0.94223 0.79961 0.93250 0.93656 0.91428 0.89572 0.86875 0.87465 0.85877 0.91350 0.92744 0.89514 0.89956 0.88007 0.92367 0.92568 0.87773 0.89939 0.90157 0.91267 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.23 -12.36 9.93 84.04 0.83 -11.52 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.07 5.12 -322.81 -1.65 -37.73 16 10 C 0.17 6.28 2.73 45.02 0.12 6.41 16 11 C -0.14 -4.30 5.66 30.67 0.17 -4.13 16 12 C 0.11 2.36 6.34 86.36 0.55 2.91 16 13 N -0.61 -14.79 2.97 -818.91 -2.43 -17.22 16 14 C 0.51 12.48 7.70 87.66 0.67 13.15 16 15 O -0.59 -19.08 15.40 -3.04 -0.05 -19.13 16 16 C -0.14 -2.09 3.91 29.85 0.12 -1.98 16 17 C -0.09 -1.37 3.71 30.60 0.11 -1.26 16 18 C -0.11 -1.44 3.13 -9.77 -0.03 -1.47 16 19 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 20 C -0.15 -1.80 6.74 31.61 0.21 -1.59 16 21 C 0.04 0.53 7.64 72.48 0.55 1.08 16 22 O -0.40 -7.93 11.65 -148.98 -1.74 -9.67 16 23 C 0.04 0.62 6.43 72.49 0.47 1.08 16 24 C 0.12 3.27 6.43 86.36 0.56 3.82 16 25 C -0.13 -4.14 5.55 30.67 0.17 -3.97 16 26 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 27 H 0.37 19.87 7.80 -92.71 -0.72 19.15 16 28 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 29 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.11 1.59 5.93 -2.39 -0.01 1.57 16 33 H 0.11 1.42 7.11 -2.39 -0.02 1.40 16 34 H 0.12 1.21 7.94 -2.39 -0.02 1.19 16 35 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 36 H 0.05 1.06 7.97 -2.39 -0.02 1.05 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.96 7.73 -2.39 -0.02 0.94 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.92 7.78 -2.38 -0.02 0.90 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.08 2.32 7.01 -2.39 -0.02 2.30 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -70.30 361.61 1.65 -68.65 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.23 Total: 28.43 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 4.98 Total: -1.52 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -3.80 Total: -114.03 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.78 Total: -28.79 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.30 1.65 -68.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990904044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.850 kcal (2) G-P(sol) polarization free energy of solvation -70.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds