Wall clock time and date at job start Fri Apr 10 2020 17:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47389 * 125.37601 * 2 1 4 4 C 1.54110 * 103.70074 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.54507 * 118.77369 * 4 3 2 6 6 C 1.50701 * 110.55005 * 241.44006 * 4 3 2 7 7 O 1.21281 * 119.99620 * 97.99544 * 6 4 3 8 8 N 1.34775 * 120.00028 * 278.00506 * 6 4 3 9 9 C 1.46924 * 120.62991 * 179.97438 * 8 6 4 10 10 C 1.53195 * 108.77370 * 233.58363 * 9 8 6 11 11 C 1.53040 * 109.30962 * 305.36340 * 10 9 8 12 12 N 1.46506 * 109.45516 * 181.38782 * 11 10 9 13 13 C 1.36938 * 119.99589 * 154.97522 * 12 11 10 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99817 * 180.02562 * 13 12 11 16 16 N 1.31611 * 120.00107 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99746 * 359.71693 * 15 13 12 18 18 H 1.48500 * 109.46781 * 90.00854 * 17 15 13 19 19 H 1.48496 * 109.47225 * 210.00413 * 17 15 13 20 20 H 1.48494 * 109.47296 * 330.00424 * 17 15 13 21 21 C 1.53034 * 109.52831 * 61.37607 * 11 10 9 22 22 C 1.46932 * 120.63106 * 359.97226 * 8 6 4 23 23 N 1.47054 * 103.99026 * 0.10855 * 4 3 2 24 24 C 1.33946 * 109.18100 * 359.92893 * 23 4 3 25 25 O 1.21586 * 123.04421 * 180.02562 * 24 23 4 26 26 H 1.09001 * 109.46454 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47398 * 299.93016 * 1 2 3 28 28 H 1.08996 * 109.46828 * 59.93768 * 1 2 3 29 29 H 1.09001 * 110.59862 * 61.43760 * 3 2 1 30 30 H 1.09004 * 110.65598 * 298.51472 * 3 2 1 31 31 H 1.09000 * 109.58843 * 113.79683 * 9 8 6 32 32 H 1.09007 * 109.58601 * 353.37062 * 9 8 6 33 33 H 1.09003 * 109.49176 * 185.41497 * 10 9 8 34 34 H 1.08995 * 109.52137 * 65.33194 * 10 9 8 35 35 H 1.09001 * 109.46096 * 301.35797 * 11 10 9 36 36 H 0.96999 * 120.00080 * 334.97012 * 12 11 10 37 37 H 0.97000 * 120.00330 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.49891 * 58.57560 * 21 11 10 39 39 H 1.09003 * 109.49621 * 178.67521 * 21 11 10 40 40 H 1.08999 * 109.58279 * 246.20797 * 22 8 6 41 41 H 1.09002 * 109.58534 * 6.48476 * 22 8 6 42 42 H 0.97001 * 125.40920 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3183 1.2018 0.0000 4 6 3.7504 0.6326 0.0007 5 1 4.2877 0.9476 -0.8939 6 6 4.4907 1.0644 1.2402 7 8 4.5691 0.3160 2.1914 8 7 5.0656 2.2824 1.2919 9 6 5.7902 2.7178 2.4936 10 6 5.2215 4.0646 2.9513 11 6 5.2771 5.0587 1.7890 12 7 4.7646 6.3575 2.2328 13 6 5.1622 7.5036 1.5977 14 1 5.8539 7.4503 0.7700 15 6 4.6771 8.7343 2.0185 16 7 5.0596 9.8360 1.4085 17 14 3.4757 8.8260 3.4461 18 1 4.2286 8.9672 4.7182 19 1 2.5825 9.9988 3.2668 20 1 2.6610 7.5852 3.4880 21 6 4.4202 4.5409 0.6316 22 6 4.9795 3.1999 0.1475 23 7 3.5538 -0.8248 -0.0017 24 6 2.2412 -1.0917 -0.0020 25 8 1.7946 -2.2226 -0.0033 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5127 0.8906 28 1 -0.3633 0.5148 -0.8894 29 1 2.1426 1.7969 0.8961 30 1 2.1439 1.7972 -0.8962 31 1 6.8494 2.8282 2.2616 32 1 5.6624 1.9792 3.2850 33 1 5.8130 4.4450 3.7841 34 1 4.1871 3.9341 3.2693 35 1 6.3088 5.1702 1.4556 36 1 4.1436 6.4054 2.9764 37 1 4.7203 10.6959 1.7023 38 1 3.3935 4.4055 0.9713 39 1 4.4413 5.2605 -0.1869 40 1 5.9726 3.3497 -0.2761 41 1 4.3189 2.7783 -0.6100 42 1 4.2621 -1.4875 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996884797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:13 Heat of formation + Delta-G solvation = -22.067278 kcal Electronic energy + Delta-G solvation = -24668.670830 eV Core-core repulsion = 21070.968749 eV Total energy + Delta-G solvation = -3597.702081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66802 -39.87867 -37.66506 -36.41742 -34.79759 -34.36428 -32.27923 -31.27976 -30.10863 -29.35396 -27.48853 -25.35238 -23.97713 -23.15422 -22.24523 -20.85964 -20.58445 -19.29459 -18.10520 -17.81758 -17.51316 -16.54751 -16.27092 -15.47367 -15.31947 -14.94705 -14.56389 -14.37296 -14.19770 -14.09312 -13.76304 -13.75417 -13.41282 -13.24061 -12.77802 -12.60531 -12.53138 -12.32646 -12.17277 -12.00284 -11.20744 -11.10869 -11.03022 -10.70080 -10.52093 -10.37229 -10.31178 -10.01463 -9.68693 -9.46242 -9.03618 -8.89380 -8.76482 -7.39495 -5.87142 -3.23723 2.12072 2.39266 2.62801 3.00500 3.29837 3.33079 3.38913 3.56040 3.93592 4.08772 4.43113 4.49939 4.65674 4.83057 4.94098 4.98766 5.05560 5.12075 5.17297 5.24207 5.35460 5.38518 5.45154 5.51697 5.59233 5.70399 5.77012 5.95192 6.01694 6.11218 6.23329 6.33351 6.36930 6.64616 6.79220 6.80245 7.14651 7.22101 7.87571 7.90327 8.31763 8.33523 9.09564 9.82373 10.01443 11.30888 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.003587 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.764939 B = 7804.844598 C = 8316.013294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.637 5.637 3 C 0.106 3.894 4 C 0.103 3.897 5 H 0.118 0.882 6 C 0.503 3.497 7 O -0.530 6.530 8 N -0.601 5.601 9 C 0.116 3.884 10 C -0.143 4.143 11 C 0.183 3.817 12 N -0.748 5.748 13 C -0.247 4.247 14 H 0.091 0.909 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.278 1.278 21 C -0.152 4.152 22 C 0.103 3.897 23 N -0.715 5.715 24 C 0.706 3.294 25 O -0.585 6.585 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 -16.788 -4.752 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.376 5.376 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.135 0.865 6 C 0.288 3.712 7 O -0.406 6.406 8 N -0.335 5.335 9 C -0.006 4.006 10 C -0.182 4.182 11 C 0.073 3.927 12 N -0.390 5.390 13 C -0.377 4.377 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.579 5.579 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.193 4.193 22 C -0.020 4.020 23 N -0.377 5.377 24 C 0.406 3.594 25 O -0.463 6.463 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -3.715 -17.556 -4.389 18.473 hybrid contribution -0.489 0.356 0.984 1.155 sum -4.205 -17.199 -3.405 18.030 Atomic orbital electron populations 1.21444 0.75277 1.04042 1.01600 1.47079 1.06518 1.05530 1.78504 1.22360 0.85982 0.88969 1.04460 1.21881 0.97359 0.83219 0.98231 0.86491 1.20660 0.79543 0.81871 0.89107 1.90732 1.59844 1.52718 1.37305 1.48214 1.53325 1.14733 1.17209 1.21644 0.95382 0.96510 0.87075 1.22258 1.01720 0.94415 0.99823 1.20139 0.96466 0.84861 0.91199 1.42795 1.54865 1.01991 1.39317 1.19048 1.22723 0.83322 1.12616 0.89132 1.24675 0.99944 0.95309 0.99004 1.69690 1.47838 0.97372 1.43025 0.86574 0.81638 0.76983 0.83408 1.21052 1.21728 1.20386 1.22652 1.00563 0.94368 1.01720 1.21972 1.02072 0.90768 0.87207 1.44836 1.06968 1.06163 1.79700 1.15792 0.81681 0.84634 0.77287 1.90955 1.75825 1.20896 1.58626 0.89493 0.91947 0.91821 0.89352 0.88447 0.91033 0.89249 0.90316 0.91927 0.92378 0.80627 0.92965 0.92168 0.89843 0.90682 0.90493 0.72437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.96 11.22 59.85 0.67 1.63 16 2 N -0.64 -6.73 3.37 -186.46 -0.63 -7.36 16 3 C 0.11 0.88 6.77 -2.98 -0.02 0.86 16 4 C 0.10 0.92 3.14 -68.20 -0.21 0.70 16 5 H 0.12 0.68 6.89 -51.93 -0.36 0.32 16 6 C 0.50 5.87 6.81 -10.99 -0.07 5.79 16 7 O -0.53 -8.28 15.99 5.56 0.09 -8.19 16 8 N -0.60 -6.49 2.97 -172.79 -0.51 -7.00 16 9 C 0.12 1.36 6.43 -3.71 -0.02 1.34 16 10 C -0.14 -1.94 5.55 -26.61 -0.15 -2.09 16 11 C 0.18 2.94 2.73 -67.89 -0.19 2.76 16 12 N -0.75 -15.90 4.92 -53.38 -0.26 -16.16 16 13 C -0.25 -6.42 10.41 -15.06 -0.16 -6.58 16 14 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 16 N -0.93 -27.95 13.97 55.49 0.78 -27.17 16 17 Si 0.88 21.05 27.73 -169.99 -4.71 16.34 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.21 6.53 56.52 0.37 -5.84 16 21 C -0.15 -2.00 5.66 -26.64 -0.15 -2.15 16 22 C 0.10 0.96 6.21 -3.73 -0.02 0.93 16 23 N -0.72 -7.78 5.62 -59.32 -0.33 -8.11 16 24 C 0.71 9.43 8.61 -88.40 -0.76 8.67 16 25 O -0.59 -9.98 17.29 5.29 0.09 -9.89 16 26 H 0.09 0.79 7.52 -51.93 -0.39 0.40 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.79 7.72 -51.93 -0.40 0.39 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.12 7.01 -51.93 -0.36 0.76 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.36 7.72 5.67 -40.82 -0.23 7.49 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.50 5.32 -51.93 -0.28 0.22 16 42 H 0.43 4.24 8.96 -40.82 -0.37 3.87 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -35.43 338.46 -7.78 -43.21 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.20 Total: 7.27 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -1.18 Total: 11.96 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -0.96 Total: -65.81 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.18 Total: -18.08 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.43 -7.78 -43.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996884797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.146 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds