Wall clock time and date at job start Fri Apr 10 2020 17:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47389 * 125.37601 * 2 1 4 4 C 1.54110 * 103.70074 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.54507 * 118.77369 * 4 3 2 6 6 C 1.50701 * 110.55005 * 241.44006 * 4 3 2 7 7 O 1.21281 * 119.99620 * 97.99544 * 6 4 3 8 8 N 1.34775 * 120.00028 * 278.00506 * 6 4 3 9 9 C 1.46924 * 120.62991 * 179.97438 * 8 6 4 10 10 C 1.53195 * 108.77370 * 233.58363 * 9 8 6 11 11 C 1.53040 * 109.30962 * 305.36340 * 10 9 8 12 12 N 1.46506 * 109.45516 * 181.38782 * 11 10 9 13 13 C 1.36938 * 119.99589 * 154.97522 * 12 11 10 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99817 * 180.02562 * 13 12 11 16 16 N 1.31611 * 120.00107 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99746 * 359.71693 * 15 13 12 18 18 H 1.48500 * 109.46781 * 90.00854 * 17 15 13 19 19 H 1.48496 * 109.47225 * 210.00413 * 17 15 13 20 20 H 1.48494 * 109.47296 * 330.00424 * 17 15 13 21 21 C 1.53034 * 109.52831 * 61.37607 * 11 10 9 22 22 C 1.46932 * 120.63106 * 359.97226 * 8 6 4 23 23 N 1.47054 * 103.99026 * 0.10855 * 4 3 2 24 24 C 1.33946 * 109.18100 * 359.92893 * 23 4 3 25 25 O 1.21586 * 123.04421 * 180.02562 * 24 23 4 26 26 H 1.09001 * 109.46454 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47398 * 299.93016 * 1 2 3 28 28 H 1.08996 * 109.46828 * 59.93768 * 1 2 3 29 29 H 1.09001 * 110.59862 * 61.43760 * 3 2 1 30 30 H 1.09004 * 110.65598 * 298.51472 * 3 2 1 31 31 H 1.09000 * 109.58843 * 113.79683 * 9 8 6 32 32 H 1.09007 * 109.58601 * 353.37062 * 9 8 6 33 33 H 1.09003 * 109.49176 * 185.41497 * 10 9 8 34 34 H 1.08995 * 109.52137 * 65.33194 * 10 9 8 35 35 H 1.09001 * 109.46096 * 301.35797 * 11 10 9 36 36 H 0.96999 * 120.00080 * 334.97012 * 12 11 10 37 37 H 0.97000 * 120.00330 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.49891 * 58.57560 * 21 11 10 39 39 H 1.09003 * 109.49621 * 178.67521 * 21 11 10 40 40 H 1.08999 * 109.58279 * 246.20797 * 22 8 6 41 41 H 1.09002 * 109.58534 * 6.48476 * 22 8 6 42 42 H 0.97001 * 125.40920 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3183 1.2018 0.0000 4 6 3.7504 0.6326 0.0007 5 1 4.2877 0.9476 -0.8939 6 6 4.4907 1.0644 1.2402 7 8 4.5691 0.3160 2.1914 8 7 5.0656 2.2824 1.2919 9 6 5.7902 2.7178 2.4936 10 6 5.2215 4.0646 2.9513 11 6 5.2771 5.0587 1.7890 12 7 4.7646 6.3575 2.2328 13 6 5.1622 7.5036 1.5977 14 1 5.8539 7.4503 0.7700 15 6 4.6771 8.7343 2.0185 16 7 5.0596 9.8360 1.4085 17 14 3.4757 8.8260 3.4461 18 1 4.2286 8.9672 4.7182 19 1 2.5825 9.9988 3.2668 20 1 2.6610 7.5852 3.4880 21 6 4.4202 4.5409 0.6316 22 6 4.9795 3.1999 0.1475 23 7 3.5538 -0.8248 -0.0017 24 6 2.2412 -1.0917 -0.0020 25 8 1.7946 -2.2226 -0.0033 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5127 0.8906 28 1 -0.3633 0.5148 -0.8894 29 1 2.1426 1.7969 0.8961 30 1 2.1439 1.7972 -0.8962 31 1 6.8494 2.8282 2.2616 32 1 5.6624 1.9792 3.2850 33 1 5.8130 4.4450 3.7841 34 1 4.1871 3.9341 3.2693 35 1 6.3088 5.1702 1.4556 36 1 4.1436 6.4054 2.9764 37 1 4.7203 10.6959 1.7023 38 1 3.3935 4.4055 0.9713 39 1 4.4413 5.2605 -0.1869 40 1 5.9726 3.3497 -0.2761 41 1 4.3189 2.7783 -0.6100 42 1 4.2621 -1.4875 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996884797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:12 Heat of formation + Delta-G solvation = -50.039255 kcal Electronic energy + Delta-G solvation = -24669.883786 eV Core-core repulsion = 21070.968749 eV Total energy + Delta-G solvation = -3598.915037 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.51535 -40.84413 -38.81443 -37.41323 -36.25896 -35.13176 -33.94924 -32.39243 -31.51433 -30.26380 -28.23539 -26.62925 -24.97499 -24.28809 -23.54181 -21.87572 -21.59387 -20.41357 -19.42327 -18.87803 -18.61651 -17.41393 -17.20871 -16.68469 -16.32712 -16.24621 -15.84881 -15.36986 -15.24675 -15.05134 -14.88434 -14.79143 -14.53152 -14.33468 -14.18931 -13.61229 -13.47901 -13.21484 -13.13449 -12.95155 -12.90177 -12.61575 -12.13738 -12.10384 -11.94139 -11.74636 -11.56833 -11.33035 -11.28486 -10.90774 -10.38902 -9.71899 -9.62182 -9.26049 -7.97984 -5.30254 1.29266 1.40824 1.42715 1.50059 1.55229 1.77727 2.08138 2.51743 2.83370 3.23094 3.27392 3.34664 3.58166 3.83125 3.89347 4.03332 4.09715 4.20616 4.35746 4.43809 4.45814 4.50001 4.65428 4.69080 4.74357 4.83040 4.86195 4.88505 4.92872 5.05100 5.11708 5.31030 5.51932 5.58787 5.65223 5.83625 5.99819 6.26510 6.28511 6.36767 7.01407 7.13085 7.41660 7.90578 8.07233 9.23401 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.003587 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.764939 B = 7804.844598 C = 8316.013294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.637 5.637 3 C 0.103 3.897 4 C 0.107 3.893 5 H 0.161 0.839 6 C 0.504 3.496 7 O -0.575 6.575 8 N -0.597 5.597 9 C 0.121 3.879 10 C -0.132 4.132 11 C 0.173 3.827 12 N -0.754 5.754 13 C -0.220 4.220 14 H 0.064 0.936 15 C -0.064 4.064 16 N -0.985 5.985 17 Si 0.948 3.052 18 H -0.284 1.284 19 H -0.301 1.301 20 H -0.252 1.252 21 C -0.144 4.144 22 C 0.109 3.891 23 N -0.713 5.713 24 C 0.693 3.307 25 O -0.634 6.634 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.362 0.638 37 H 0.255 0.745 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -17.670 -5.429 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.376 5.376 3 C -0.020 4.020 4 C -0.003 4.003 5 H 0.178 0.822 6 C 0.291 3.709 7 O -0.454 6.454 8 N -0.329 5.329 9 C -0.002 4.002 10 C -0.171 4.171 11 C 0.065 3.935 12 N -0.396 5.396 13 C -0.351 4.351 14 H 0.082 0.918 15 C -0.255 4.255 16 N -0.636 5.636 17 Si 0.777 3.223 18 H -0.211 1.211 19 H -0.228 1.228 20 H -0.177 1.177 21 C -0.184 4.184 22 C -0.013 4.013 23 N -0.373 5.373 24 C 0.393 3.607 25 O -0.516 6.516 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.195 0.805 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.135 0.865 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -4.359 -18.462 -5.078 19.637 hybrid contribution -0.199 0.599 1.179 1.338 sum -4.558 -17.863 -3.898 18.843 Atomic orbital electron populations 1.21625 0.74188 1.03589 1.03461 1.47275 1.07357 1.05522 1.77466 1.22648 0.84870 0.88239 1.06233 1.22154 0.97995 0.81916 0.98185 0.82208 1.21150 0.78903 0.81432 0.89403 1.90726 1.61459 1.53998 1.39176 1.48235 1.52681 1.14781 1.17207 1.21533 0.96163 0.94926 0.87558 1.22114 1.01654 0.94640 0.98684 1.20446 0.96425 0.83319 0.93285 1.42866 1.54964 1.02585 1.39200 1.19036 1.20366 0.84804 1.10872 0.91787 1.25412 1.02738 0.95131 1.02247 1.69861 1.50306 0.97898 1.45501 0.85515 0.79489 0.77429 0.79913 1.21099 1.22797 1.17697 1.22435 1.00135 0.96154 0.99691 1.22057 1.03723 0.88399 0.87120 1.44865 1.06275 1.07371 1.78831 1.16126 0.82566 0.84637 0.77348 1.90909 1.76810 1.22969 1.60906 0.91168 0.90899 0.89072 0.89751 0.84434 0.89635 0.90041 0.90640 0.92259 0.93174 0.80522 0.93568 0.91985 0.91300 0.89203 0.86478 0.72201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.59 11.22 127.77 1.43 3.02 16 2 N -0.64 -11.89 3.37 -862.55 -2.90 -14.79 16 3 C 0.10 1.27 6.77 86.58 0.59 1.86 16 4 C 0.11 1.47 3.14 44.52 0.14 1.61 16 5 H 0.16 0.88 6.89 -2.39 -0.02 0.86 16 6 C 0.50 10.22 6.81 87.66 0.60 10.81 16 7 O -0.57 -17.05 15.99 -3.03 -0.05 -17.10 16 8 N -0.60 -10.78 2.97 -818.96 -2.43 -13.22 16 9 C 0.12 2.54 6.43 86.36 0.56 3.10 16 10 C -0.13 -3.30 5.55 30.67 0.17 -3.13 16 11 C 0.17 5.22 2.73 45.02 0.12 5.34 16 12 N -0.75 -30.97 4.92 -322.81 -1.59 -32.56 16 13 C -0.22 -11.38 10.41 84.03 0.87 -10.50 16 14 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 15 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 16 N -0.98 -60.38 13.97 21.65 0.30 -60.08 16 17 Si 0.95 43.33 27.73 68.60 1.90 45.23 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.25 -10.31 6.53 99.48 0.65 -9.66 16 21 C -0.14 -3.33 5.66 30.66 0.17 -3.16 16 22 C 0.11 1.54 6.21 86.35 0.54 2.07 16 23 N -0.71 -14.02 5.62 -460.33 -2.59 -16.61 16 24 C 0.69 17.65 8.61 179.57 1.55 19.20 16 25 O -0.63 -21.77 17.29 -3.99 -0.07 -21.84 16 26 H 0.07 1.24 7.52 -2.39 -0.02 1.22 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 1.16 7.72 -2.39 -0.02 1.15 16 30 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.91 7.01 -2.38 -0.02 1.89 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.60 8.08 -2.39 -0.02 1.58 16 36 H 0.36 14.70 5.67 -92.71 -0.53 14.18 16 37 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.12 0.77 5.32 -2.39 -0.01 0.76 16 42 H 0.44 7.93 8.96 -92.71 -0.83 7.09 16 Total: -1.00 -80.34 338.46 -0.59 -80.93 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -0.36 Total: 22.91 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 7.20 Total: 27.12 kcal Atomic # 7 Polarization: -128.05 SS G_CDS: -9.21 Total: -137.25 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.12 Total: -38.94 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.90 Total: 45.23 kcal Total: -80.34 -0.59 -80.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996884797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.888 kcal (2) G-P(sol) polarization free energy of solvation -80.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds