Wall clock time and date at job start Fri Apr 10 2020 17:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.50090 * 34.94311 * 10 9 7 12 12 C 1.53033 * 109.50279 * 274.83869 * 10 9 7 13 13 C 1.53045 * 109.54155 * 178.68377 * 12 10 9 14 14 C 1.53195 * 109.30969 * 61.36742 * 13 12 10 15 15 N 1.46930 * 108.77695 * 305.36626 * 14 13 12 16 16 C 1.34769 * 120.63061 * 233.58873 * 15 14 13 17 17 O 1.21284 * 119.99828 * 180.02562 * 16 15 14 18 18 C 1.50704 * 120.00046 * 0.02562 * 16 15 14 19 19 C 1.53001 * 109.47089 * 180.02562 * 18 16 15 20 20 C 1.53179 * 109.54086 * 294.55430 * 19 18 16 21 21 C 1.53095 * 109.16317 * 183.15229 * 20 19 18 22 22 O 1.42906 * 109.41405 * 57.61401 * 21 20 19 23 23 C 1.42912 * 114.09084 * 298.83675 * 22 21 20 24 24 C 1.53093 * 109.41295 * 61.16390 * 23 22 21 25 25 C 1.46926 * 118.73854 * 53.60740 * 15 14 13 26 26 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 28 28 H 1.08995 * 109.46634 * 298.70839 * 12 10 9 29 29 H 1.09004 * 109.46073 * 58.66870 * 12 10 9 30 30 H 1.08998 * 109.50043 * 301.41763 * 13 12 10 31 31 H 1.08999 * 109.52805 * 181.33568 * 13 12 10 32 32 H 1.08994 * 109.58524 * 185.57920 * 14 13 12 33 33 H 1.08997 * 109.58487 * 65.15292 * 14 13 12 34 34 H 1.08999 * 109.47192 * 300.00130 * 18 16 15 35 35 H 1.08997 * 109.47182 * 60.00354 * 18 16 15 36 36 H 1.08994 * 109.54560 * 54.81904 * 19 18 16 37 37 H 1.09004 * 109.52516 * 303.06098 * 20 19 18 38 38 H 1.08999 * 109.52461 * 63.24981 * 20 19 18 39 39 H 1.08992 * 109.48285 * 297.62548 * 21 20 19 40 40 H 1.08999 * 109.48093 * 177.58705 * 21 20 19 41 41 H 1.08990 * 109.48561 * 301.17622 * 23 22 21 42 42 H 1.09002 * 109.48793 * 181.14658 * 23 22 21 43 43 H 1.09000 * 109.51905 * 182.48251 * 24 23 22 44 44 H 1.09001 * 109.57654 * 62.32120 * 24 23 22 45 45 H 1.08999 * 109.58612 * 186.60863 * 25 15 14 46 46 H 1.09005 * 109.70347 * 66.24526 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9694 -3.5507 0.5891 12 6 2.4189 -4.0383 -1.4369 13 6 3.2127 -5.3468 -1.4352 14 6 2.3479 -6.4632 -0.8412 15 7 1.8767 -6.0415 0.4851 16 6 2.0792 -6.8211 1.5656 17 8 1.6850 -6.4620 2.6549 18 6 2.7955 -8.1391 1.4202 19 6 2.8918 -8.8205 2.7867 20 6 3.7825 -7.9872 3.7132 21 6 3.9369 -8.7156 5.0509 22 8 4.4853 -10.0155 4.8233 23 6 3.6720 -10.8561 4.0021 24 6 3.5071 -10.2136 2.6224 25 6 1.1802 -4.7540 0.6109 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 0.0042 28 1 1.5061 -4.1681 -2.0183 29 1 3.0232 -3.2477 -1.8817 30 1 4.1134 -5.2252 -0.8336 31 1 3.4900 -5.6060 -2.4570 32 1 2.9405 -7.3730 -0.7462 33 1 1.4926 -6.6478 -1.4912 34 1 2.2422 -8.7795 0.7334 35 1 3.7979 -7.9665 1.0285 36 1 1.8959 -8.9106 3.2203 37 1 4.7627 -7.8556 3.2549 38 1 3.3237 -7.0127 3.8801 39 1 2.9614 -8.8109 5.5276 40 1 4.6046 -8.1480 5.6990 41 1 2.6931 -10.9795 4.4651 42 1 4.1487 -11.8305 3.8947 43 1 2.8511 -10.8314 2.0090 44 1 4.4811 -10.1271 2.1409 45 1 1.0024 -4.5361 1.6640 46 1 0.2287 -4.7975 0.0809 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998777950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:27 Heat of formation + Delta-G solvation = -86.961784 kcal Electronic energy + Delta-G solvation = -24729.057759 eV Core-core repulsion = 21232.081985 eV Total energy + Delta-G solvation = -3496.975775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38019 -39.21886 -37.38044 -34.73860 -34.50039 -32.23726 -31.32291 -31.20092 -29.54742 -27.99427 -25.25752 -24.11666 -23.71994 -23.05713 -22.06598 -20.43076 -19.88773 -18.76043 -17.20595 -17.10122 -16.25108 -16.11977 -15.83261 -15.43605 -14.89865 -14.80969 -14.34805 -14.18759 -14.06512 -13.55784 -13.51932 -13.05681 -12.94789 -12.86003 -12.60363 -12.34268 -12.18117 -11.99727 -11.48297 -11.23758 -11.03793 -10.97143 -10.92824 -10.76681 -10.65758 -10.45565 -10.40242 -10.35586 -10.05616 -9.80260 -9.71208 -9.43379 -8.93606 -8.40015 -7.00710 -5.79656 -3.09314 2.74442 3.11002 3.41861 3.47736 3.49741 3.71324 4.37434 4.48145 4.56709 4.58682 4.76951 4.85625 4.93007 5.06815 5.11747 5.17761 5.23858 5.28288 5.30065 5.38776 5.49345 5.52196 5.54247 5.58733 5.63085 5.71254 5.73930 5.75637 5.79885 5.90559 6.01809 6.13304 6.16510 6.20086 6.24902 6.36909 6.53161 6.69524 6.86149 7.02304 7.03070 7.58301 7.67993 8.31891 8.38638 9.49602 10.04870 10.39854 11.42896 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.003113 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.004685 B = 8992.145762 C = 9572.601534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.169 3.831 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.134 4.134 14 C 0.107 3.893 15 N -0.606 5.606 16 C 0.511 3.489 17 O -0.541 6.541 18 C -0.134 4.134 19 C -0.073 4.073 20 C -0.156 4.156 21 C 0.062 3.938 22 O -0.387 6.387 23 C 0.062 3.938 24 C -0.152 4.152 25 C 0.105 3.895 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.841 -22.703 1.239 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.016 4.016 15 N -0.340 5.340 16 C 0.300 3.700 17 O -0.418 6.418 18 C -0.174 4.174 19 C -0.092 4.092 20 C -0.194 4.194 21 C -0.015 4.015 22 O -0.306 6.306 23 C -0.015 4.015 24 C -0.189 4.189 25 C -0.017 4.017 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.917 -22.404 1.911 23.526 hybrid contribution -0.147 1.131 -0.476 1.236 sum 6.770 -21.273 1.434 22.370 Atomic orbital electron populations 1.69671 1.05115 1.25629 1.57553 1.24752 0.95529 0.97724 1.02849 0.86118 0.78791 0.84078 0.77203 1.20541 1.21849 1.21809 1.19250 0.90991 0.83882 1.42832 0.91118 1.42323 1.05807 0.99551 1.88571 1.20470 0.94628 0.86001 0.93119 0.93299 1.22278 0.99584 0.95255 1.00659 1.21937 0.98821 0.96065 1.00432 1.21769 0.98332 0.97634 0.83823 1.48155 1.57512 1.20566 1.07724 1.20607 0.79588 0.85979 0.83865 1.90661 1.51453 1.73952 1.25762 1.21750 1.01747 0.94570 0.99302 1.20944 1.00171 0.93762 0.94346 1.22366 1.00043 1.01055 0.95908 1.22595 0.98892 0.83352 0.96617 1.87912 1.47615 1.25177 1.69927 1.22530 0.95298 0.93695 0.89993 1.22270 1.01915 0.96520 0.98243 1.21984 0.94982 0.81497 1.03266 0.93497 0.78207 0.92493 0.91582 0.91885 0.91355 0.90292 0.91419 0.89045 0.88928 0.90237 0.91657 0.88614 0.93134 0.88955 0.93276 0.89083 0.90900 0.90943 0.88964 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.59 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -17.96 5.13 -53.31 -0.27 -18.23 16 10 C 0.17 3.33 2.92 -67.81 -0.20 3.13 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.14 -2.30 5.47 -26.69 -0.15 -2.45 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C 0.11 1.17 6.34 -3.71 -0.02 1.14 16 15 N -0.61 -8.60 2.97 -172.76 -0.51 -9.11 16 16 C 0.51 7.23 7.44 -10.99 -0.08 7.15 16 17 O -0.54 -9.60 13.42 5.55 0.07 -9.52 16 18 C -0.13 -1.29 3.53 -27.88 -0.10 -1.39 16 19 C -0.07 -0.73 1.92 -90.44 -0.17 -0.90 16 20 C -0.16 -1.75 5.13 -26.59 -0.14 -1.89 16 21 C 0.06 0.65 6.84 37.21 0.25 0.90 16 22 O -0.39 -4.27 10.77 -35.23 -0.38 -4.65 16 23 C 0.06 0.51 6.84 37.21 0.25 0.77 16 24 C -0.15 -1.18 5.42 -26.59 -0.14 -1.32 16 25 C 0.11 1.86 5.90 -3.71 -0.02 1.84 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 35 H 0.09 0.78 7.69 -51.93 -0.40 0.39 16 36 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.32 6.07 -51.93 -0.32 1.00 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.84 7.00 -51.93 -0.36 1.48 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -32.08 355.93 -8.94 -41.02 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.99 Total: 7.11 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.92 Total: -2.00 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.06 Total: -54.67 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.30 Total: -14.18 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.08 -8.94 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998777950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.943 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds