Wall clock time and date at job start Fri Apr 10 2020 17:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99895 * 2 1 4 4 H 1.48499 * 109.47116 * 269.99989 * 3 2 1 5 5 H 1.48499 * 109.47009 * 29.99546 * 3 2 1 6 6 H 1.48495 * 109.46919 * 149.99769 * 3 2 1 7 7 C 1.38805 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99988 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00196 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00244 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.52456 * 324.92303 * 10 9 7 12 12 C 1.53046 * 109.49594 * 85.00235 * 10 9 7 13 13 C 1.53046 * 109.53579 * 181.31758 * 12 10 9 14 14 C 1.53186 * 109.31207 * 298.63381 * 13 12 10 15 15 N 1.46919 * 108.77954 * 54.63337 * 14 13 12 16 16 C 1.34774 * 120.63129 * 126.40868 * 15 14 13 17 17 O 1.21281 * 120.00524 * 180.02562 * 16 15 14 18 18 C 1.50709 * 120.00204 * 0.02562 * 16 15 14 19 19 C 1.52992 * 109.47209 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.46988 * 179.97438 * 19 18 16 21 21 H 1.09004 * 110.43864 * 303.90866 * 20 19 18 22 22 C 1.54810 * 110.49269 * 181.22107 * 20 19 18 23 23 C 1.54994 * 102.09416 * 220.44176 * 22 20 19 24 24 O 1.44386 * 103.48732 * 37.02031 * 23 22 20 25 25 C 1.43738 * 106.97570 * 319.94019 * 24 23 22 26 26 C 1.46927 * 118.74179 * 306.39646 * 15 14 13 27 27 H 0.97006 * 120.00379 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00095 * 0.02562 * 9 7 2 29 29 H 1.08993 * 109.46296 * 61.29847 * 12 10 9 30 30 H 1.09000 * 109.45696 * 301.33403 * 12 10 9 31 31 H 1.09004 * 109.49895 * 58.58445 * 13 12 10 32 32 H 1.08997 * 109.49204 * 178.65011 * 13 12 10 33 33 H 1.09002 * 109.58478 * 174.42871 * 14 13 12 34 34 H 1.09004 * 109.58514 * 294.70524 * 14 13 12 35 35 H 1.09004 * 109.46316 * 299.99716 * 18 16 15 36 36 H 1.08997 * 109.46997 * 59.98881 * 18 16 15 37 37 H 1.09000 * 109.47094 * 299.99087 * 19 18 16 38 38 H 1.09000 * 109.47171 * 60.00131 * 19 18 16 39 39 H 1.09002 * 110.90339 * 338.63755 * 22 20 19 40 40 H 1.09001 * 110.90701 * 102.24162 * 22 20 19 41 41 H 1.08998 * 110.62160 * 278.52146 * 23 22 20 42 42 H 1.09001 * 110.74984 * 155.58228 * 23 22 20 43 43 H 1.09006 * 109.87853 * 267.08749 * 25 24 23 44 44 H 1.08997 * 109.87564 * 145.94206 * 25 24 23 45 45 H 1.09000 * 109.58699 * 173.39102 * 26 15 14 46 46 H 1.08997 * 109.58189 * 293.67304 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.5659 -3.2063 0.5929 12 6 4.2592 -2.9770 -1.4346 13 6 4.9955 -4.3186 -1.4317 14 6 6.3958 -4.1267 -0.8410 15 7 6.2690 -3.5052 0.4842 16 6 6.8450 -4.0682 1.5647 17 8 6.7327 -3.5457 2.6534 18 6 7.6289 -5.3473 1.4203 19 6 8.1735 -5.7688 2.7865 20 6 8.9687 -7.0676 2.6399 21 1 8.3508 -7.8433 2.1873 22 6 9.5056 -7.5326 4.0154 23 6 10.9306 -8.0264 3.6578 24 8 11.3681 -7.0904 2.6492 25 6 10.2383 -6.8308 1.7993 26 6 5.5024 -2.2580 0.6092 27 1 -0.4851 0.8401 -0.0004 28 1 3.8646 -0.3621 0.0014 29 1 4.8268 -2.2525 -2.0185 30 1 3.2714 -3.1058 -1.8771 31 1 4.4411 -5.0367 -0.8275 32 1 5.0788 -4.6900 -2.4531 33 1 6.8878 -5.0947 -0.7451 34 1 6.9829 -3.4817 -1.4947 35 1 6.9780 -6.1302 1.0308 36 1 8.4589 -5.1890 0.7317 37 1 8.8244 -4.9858 3.1754 38 1 7.3436 -5.9271 3.4753 39 1 9.5473 -6.7004 4.7181 40 1 8.9004 -8.3468 4.4142 41 1 10.8961 -9.0380 3.2535 42 1 11.5838 -7.9847 4.5294 43 1 10.2512 -7.5109 0.9475 44 1 10.2655 -5.7980 1.4519 45 1 5.4049 -1.9930 1.6620 46 1 6.0172 -1.4580 0.0772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998854349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:33 Heat of formation + Delta-G solvation = -104.656369 kcal Electronic energy + Delta-G solvation = -24295.557795 eV Core-core repulsion = 20797.814726 eV Total energy + Delta-G solvation = -3497.743069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32974 -40.31320 -38.79505 -36.32031 -35.48058 -33.94226 -32.92066 -31.97905 -30.63583 -29.31496 -26.64656 -25.83542 -24.75332 -23.33726 -23.16694 -21.61269 -21.10577 -20.10825 -19.48513 -18.25198 -17.59790 -17.05000 -16.78304 -16.62544 -16.43944 -15.89247 -15.78348 -15.29468 -15.13676 -14.80565 -14.73564 -14.40929 -14.28613 -14.00534 -13.84178 -13.52916 -13.11153 -12.98719 -12.96723 -12.58616 -12.50670 -12.27622 -12.14977 -12.00574 -11.87728 -11.82925 -11.77033 -11.66253 -11.60973 -11.45779 -10.96938 -10.79073 -10.54945 -9.69271 -9.33384 -8.05696 -5.40327 1.35815 1.39299 1.46312 1.63749 1.97745 2.45559 3.08369 3.25296 3.47711 3.54706 3.58976 3.86464 3.95516 3.99314 4.03337 4.12119 4.21441 4.25101 4.27039 4.33441 4.33945 4.46703 4.55137 4.66990 4.68094 4.76403 4.81439 4.86917 4.87739 4.90283 4.96160 5.01006 5.05547 5.12477 5.17115 5.24553 5.36505 5.39705 5.48724 5.52721 5.73587 5.99875 6.17593 6.46663 7.02754 7.19150 7.77500 7.97135 9.15648 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.002770 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.819958 B =10104.074943 C =10411.857891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.255 1.255 7 C -0.229 4.229 8 H 0.054 0.946 9 N -0.751 5.751 10 C 0.170 3.830 11 H 0.029 0.971 12 C -0.131 4.131 13 C -0.126 4.126 14 C 0.104 3.896 15 N -0.607 5.607 16 C 0.503 3.497 17 O -0.595 6.595 18 C -0.130 4.130 19 C -0.091 4.091 20 C -0.115 4.115 21 H 0.107 0.893 22 C -0.154 4.154 23 C 0.042 3.958 24 O -0.410 6.410 25 C 0.043 3.957 26 C 0.113 3.887 27 H 0.258 0.742 28 H 0.366 0.634 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.247 -18.845 -0.778 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.180 1.180 7 C -0.360 4.360 8 H 0.072 0.928 9 N -0.394 5.394 10 C 0.061 3.939 11 H 0.047 0.953 12 C -0.171 4.171 13 C -0.164 4.164 14 C -0.017 4.017 15 N -0.340 5.340 16 C 0.293 3.707 17 O -0.476 6.476 18 C -0.169 4.169 19 C -0.129 4.129 20 C -0.134 4.134 21 H 0.126 0.874 22 C -0.191 4.191 23 C -0.034 4.034 24 O -0.330 6.330 25 C -0.033 4.033 26 C -0.011 4.011 27 H 0.067 0.933 28 H 0.199 0.801 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.193 -18.574 -0.236 30.502 hybrid contribution -0.805 1.508 0.307 1.737 sum 23.387 -17.066 0.072 28.952 Atomic orbital electron populations 1.69882 1.07111 1.26741 1.59584 1.25508 0.96147 1.01291 1.02555 0.85394 0.78499 0.79516 0.78278 1.19886 1.22336 1.17988 1.18937 0.82334 0.93340 1.41399 0.92803 1.42670 1.02590 1.03693 1.90459 1.20618 0.90578 0.87143 0.95553 0.95282 1.22071 1.00066 0.97862 0.97073 1.21904 0.95579 0.96132 1.02830 1.22117 0.97451 1.00359 0.81738 1.48240 1.51326 1.24769 1.09660 1.21622 0.79085 0.87146 0.82831 1.90687 1.62943 1.65902 1.28077 1.21829 1.00992 0.93552 1.00558 1.21303 0.99285 0.96358 0.95940 1.22578 0.96841 0.97747 0.96204 0.87448 1.23226 0.96729 1.01993 0.97188 1.23705 0.95011 0.93149 0.91536 1.88845 1.35256 1.64621 1.44281 1.23475 0.84230 1.02151 0.93436 1.21587 0.91301 0.86996 1.01229 0.93278 0.80099 0.91595 0.94047 0.92261 0.87837 0.85813 0.89417 0.85836 0.85951 0.93035 0.92425 0.91560 0.88559 0.90695 0.88611 0.90423 0.89792 0.92003 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.80 13.97 21.65 0.30 -63.50 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.96 46.18 27.74 68.60 1.90 48.08 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.26 -11.28 6.52 99.48 0.65 -10.64 16 7 C -0.23 -13.28 10.41 84.03 0.87 -12.41 16 8 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 9 N -0.75 -35.64 4.93 -322.58 -1.59 -37.23 16 10 C 0.17 6.51 2.92 45.07 0.13 6.64 16 11 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 12 C -0.13 -4.04 5.47 30.63 0.17 -3.87 16 13 C -0.13 -2.49 6.08 30.67 0.19 -2.30 16 14 C 0.10 1.62 6.34 86.36 0.55 2.17 16 15 N -0.61 -15.17 2.97 -818.92 -2.43 -17.60 16 16 C 0.50 13.10 7.70 87.66 0.67 13.78 16 17 O -0.60 -21.84 15.39 -3.03 -0.05 -21.89 16 18 C -0.13 -1.85 3.87 29.85 0.12 -1.74 16 19 C -0.09 -1.51 3.73 30.59 0.11 -1.40 16 20 C -0.12 -1.29 3.08 -9.80 -0.03 -1.32 16 21 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 22 C -0.15 -1.81 6.71 31.89 0.21 -1.59 16 23 C 0.04 0.51 7.72 72.66 0.56 1.07 16 24 O -0.41 -7.30 11.52 -148.98 -1.72 -9.01 16 25 C 0.04 0.53 6.92 72.35 0.50 1.03 16 26 C 0.11 3.73 5.90 86.36 0.51 4.24 16 27 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 28 H 0.37 16.61 5.66 -92.71 -0.52 16.08 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.12 0.94 5.93 -2.39 -0.01 0.92 16 34 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.12 1.11 7.69 -2.39 -0.02 1.09 16 36 H 0.12 1.05 6.67 -2.39 -0.02 1.04 16 37 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 38 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 39 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.08 1.02 6.70 -2.39 -0.02 1.00 16 45 H 0.06 2.43 7.01 -2.39 -0.02 2.41 16 46 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -79.59 357.35 1.82 -77.76 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.37 Total: 22.42 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 5.03 Total: 0.96 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -3.72 Total: -118.33 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.76 Total: -30.90 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Total: -79.59 1.82 -77.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998854349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.892 kcal (2) G-P(sol) polarization free energy of solvation -79.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds