Wall clock time and date at job start Fri Apr 10 2020 17:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99678 * 2 1 4 4 H 1.48497 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47041 * 300.00352 * 3 2 1 6 6 H 1.48503 * 109.46807 * 60.00003 * 3 2 1 7 7 C 1.38809 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99986 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00252 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49870 * 34.93928 * 10 9 7 12 12 C 1.53038 * 109.52695 * 274.85292 * 10 9 7 13 13 C 1.53037 * 109.53902 * 178.66737 * 12 10 9 14 14 C 1.52754 * 109.38374 * 61.24301 * 13 12 10 15 15 N 1.46928 * 109.01096 * 305.58485 * 14 13 12 16 16 C 1.34771 * 120.63219 * 233.58477 * 15 14 13 17 17 O 1.21278 * 120.00242 * 4.66067 * 16 15 14 18 18 C 1.50705 * 119.99631 * 184.65541 * 16 15 14 19 19 H 1.08997 * 109.54336 * 321.88971 * 18 16 15 20 20 C 1.54198 * 109.53892 * 201.72453 * 18 16 15 21 21 C 1.46283 * 111.99278 * 162.59058 * 20 18 16 22 22 C 1.54127 * 112.19325 * 61.42076 * 21 20 18 23 23 O 1.40327 * 108.83729 * 280.37157 * 22 21 20 24 24 C 1.44123 * 116.49687 * 94.84633 * 23 22 21 25 25 C 1.50629 * 109.53474 * 82.14075 * 18 16 15 26 26 C 1.46930 * 118.73090 * 53.30792 * 15 14 13 27 27 H 0.96996 * 120.00104 * 0.02562 * 1 2 3 28 28 H 0.97009 * 119.99615 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46008 * 298.69089 * 12 10 9 30 30 H 1.09008 * 109.45712 * 58.66221 * 12 10 9 31 31 H 1.09004 * 109.49597 * 181.32194 * 13 12 10 32 32 H 1.09008 * 109.49751 * 301.38445 * 13 12 10 33 33 H 1.09009 * 109.51157 * 185.70481 * 14 13 12 34 34 H 1.08993 * 109.43483 * 65.42570 * 14 13 12 35 35 H 1.09003 * 108.97682 * 41.94199 * 20 18 16 36 36 H 1.09005 * 108.97516 * 283.24278 * 20 18 16 37 37 H 1.08994 * 108.93708 * 300.71659 * 21 20 18 38 38 H 1.09000 * 108.93518 * 182.11468 * 21 20 18 39 39 H 1.08996 * 109.59776 * 40.21732 * 22 21 20 40 40 H 1.09001 * 109.59346 * 160.52733 * 22 21 20 41 41 H 1.08995 * 108.70767 * 197.05148 * 24 23 22 42 42 H 1.09006 * 108.56969 * 79.14365 * 24 23 22 43 43 H 1.08993 * 108.88578 * 330.97507 * 25 18 16 44 44 H 1.08996 * 108.87932 * 89.43758 * 25 18 16 45 45 H 1.09006 * 109.58677 * 66.43641 * 26 15 14 46 46 H 1.09004 * 109.58085 * 186.71120 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0584 -3.6566 -0.0005 11 1 2.9697 -3.5505 0.5879 12 6 2.4198 -4.0386 -1.4377 13 6 3.2139 -5.3468 -1.4353 14 6 2.3543 -6.4606 -0.8404 15 7 1.8776 -6.0413 0.4846 16 6 2.0807 -6.8202 1.5656 17 8 2.7346 -7.8367 1.4664 18 6 1.4953 -6.4278 2.8977 19 1 1.5586 -5.3465 3.0195 20 6 2.2797 -7.1210 4.0300 21 6 2.0447 -6.4867 5.3271 22 6 0.5634 -6.5528 5.7476 23 8 -0.1449 -5.5477 5.0712 24 6 -0.7986 -5.9348 3.8465 25 6 0.0538 -6.8601 2.9615 26 6 1.1807 -4.7539 0.6097 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0002 29 1 1.5072 -4.1688 -2.0193 30 1 3.0243 -3.2480 -1.8825 31 1 3.4912 -5.6060 -2.4572 32 1 4.1147 -5.2246 -0.8338 33 1 2.9501 -7.3683 -0.7440 34 1 1.5016 -6.6484 -1.4929 35 1 3.3446 -7.0773 3.8018 36 1 1.9732 -8.1656 4.0854 37 1 2.3502 -5.4420 5.2705 38 1 2.6493 -6.9900 6.0816 39 1 0.1525 -7.5281 5.4871 40 1 0.4815 -6.3970 6.8233 41 1 -1.0409 -5.0356 3.2802 42 1 -1.7272 -6.4483 4.0960 43 1 -0.3589 -6.8620 1.9527 44 1 0.0067 -7.8728 3.3617 45 1 0.2302 -4.7997 0.0779 46 1 1.0001 -4.5370 1.6626 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999033865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:43 Heat of formation + Delta-G solvation = -79.239632 kcal Electronic energy + Delta-G solvation = -25578.169729 eV Core-core repulsion = 22081.528812 eV Total energy + Delta-G solvation = -3496.640917 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61952 -38.95179 -37.36739 -34.82883 -34.32495 -33.05941 -32.01478 -31.29777 -28.33372 -27.42727 -26.17532 -24.84279 -23.82987 -22.37731 -21.13624 -20.90393 -19.90585 -18.77003 -17.38687 -17.08209 -16.93487 -16.19102 -15.53794 -15.16218 -14.94477 -14.55386 -14.21017 -14.02992 -13.90730 -13.68094 -13.34642 -13.28603 -13.12347 -12.83810 -12.69066 -12.31486 -12.07322 -11.69559 -11.33864 -11.19531 -10.98704 -10.92477 -10.82188 -10.80337 -10.58256 -10.53333 -10.43944 -10.37581 -10.08317 -9.73896 -9.64048 -9.40151 -8.95597 -8.42381 -7.04435 -5.82986 -3.12734 2.72035 3.09666 3.40359 3.46787 3.48377 3.75155 4.42221 4.46513 4.57462 4.69922 4.82963 4.87161 5.03202 5.14443 5.21975 5.26565 5.29264 5.35988 5.41673 5.44986 5.51160 5.55114 5.60431 5.64545 5.77697 5.81599 5.85073 5.88065 5.90182 5.94474 6.07187 6.10094 6.13868 6.25450 6.32452 6.36733 6.42550 6.71023 6.80400 6.98748 7.29004 7.55838 7.66227 8.29029 8.35142 9.46684 10.00407 10.35614 11.39466 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.004836 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.465799 B = 5788.911726 C = 7131.719532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.167 3.833 11 H 0.051 0.949 12 C -0.137 4.137 13 C -0.133 4.133 14 C 0.112 3.888 15 N -0.604 5.604 16 C 0.522 3.478 17 O -0.552 6.552 18 C -0.107 4.107 19 H 0.106 0.894 20 C -0.097 4.097 21 C -0.152 4.152 22 C 0.066 3.934 23 O -0.380 6.380 24 C 0.064 3.936 25 C -0.141 4.141 26 C 0.098 3.902 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -15.623 6.184 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.056 3.944 11 H 0.069 0.931 12 C -0.177 4.177 13 C -0.172 4.172 14 C -0.010 4.010 15 N -0.336 5.336 16 C 0.310 3.690 17 O -0.431 6.431 18 C -0.128 4.128 19 H 0.124 0.876 20 C -0.135 4.135 21 C -0.190 4.190 22 C -0.012 4.012 23 O -0.299 6.299 24 C -0.013 4.013 25 C -0.179 4.179 26 C -0.026 4.026 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.744 -15.826 6.201 17.014 hybrid contribution 0.150 0.799 -0.353 0.886 sum 0.894 -15.028 5.848 16.150 Atomic orbital electron populations 1.69659 1.05100 1.25683 1.57493 1.24729 0.95503 0.97679 1.02725 0.86138 0.78832 0.84110 0.77228 1.20547 1.21843 1.21779 1.19238 0.91015 0.83832 1.42969 0.91108 1.42308 1.05744 0.99479 1.88674 1.20477 0.94548 0.85852 0.93488 0.93118 1.22273 0.99642 0.95418 1.00409 1.21850 0.98928 0.95928 1.00445 1.21506 0.98292 0.98320 0.82909 1.48132 1.57269 1.20437 1.07800 1.20575 0.79646 0.83195 0.85535 1.90638 1.40560 1.26374 1.85487 1.21117 0.95680 1.03406 0.92607 0.87561 1.20396 1.00724 0.99389 0.92966 1.21168 0.97702 1.02690 0.97435 1.22352 0.90862 0.91555 0.96402 1.87550 1.69008 1.36966 1.36372 1.22992 0.93574 0.99688 0.85000 1.21850 0.94005 1.00440 1.01624 1.22242 0.95737 0.81998 1.02585 0.93472 0.78206 0.92495 0.91565 0.91429 0.91986 0.89564 0.91816 0.91236 0.91696 0.90722 0.91042 0.93133 0.89930 0.88670 0.92844 0.90245 0.91080 0.91376 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.72 -16.95 5.12 -53.31 -0.27 -17.22 16 10 C 0.17 3.13 2.92 -67.82 -0.20 2.93 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 C -0.14 -2.32 5.47 -26.69 -0.15 -2.47 16 13 C -0.13 -1.86 6.06 -26.84 -0.16 -2.02 16 14 C 0.11 1.54 6.41 -3.93 -0.03 1.51 16 15 N -0.60 -8.83 2.98 -173.02 -0.52 -9.34 16 16 C 0.52 7.84 6.53 -10.99 -0.07 7.77 16 17 O -0.55 -9.71 15.51 5.56 0.09 -9.62 16 18 C -0.11 -1.35 1.40 -92.33 -0.13 -1.48 16 19 H 0.11 1.45 5.91 -51.93 -0.31 1.14 16 20 C -0.10 -1.13 4.18 -29.30 -0.12 -1.25 16 21 C -0.15 -1.55 5.47 -29.34 -0.16 -1.71 16 22 C 0.07 0.65 6.37 37.75 0.24 0.89 16 23 O -0.38 -4.70 10.20 -33.70 -0.34 -5.04 16 24 C 0.06 0.68 6.67 37.59 0.25 0.93 16 25 C -0.14 -1.52 4.79 -27.49 -0.13 -1.65 16 26 C 0.10 1.51 5.76 -3.71 -0.02 1.49 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 28 H 0.38 9.51 7.80 -40.82 -0.32 9.19 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.09 1.22 7.00 -51.92 -0.36 0.85 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 36 H 0.06 0.74 7.60 -51.93 -0.39 0.34 16 37 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.44 6.98 -51.93 -0.36 0.08 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 44 H 0.07 0.71 6.84 -51.93 -0.35 0.36 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.09 1.34 5.42 -51.93 -0.28 1.05 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -30.54 352.09 -8.77 -39.31 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.81 Total: 8.13 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.92 Total: -1.97 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.06 Total: -53.00 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.26 Total: -14.66 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.54 -8.77 -39.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999033865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.931 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds