Wall clock time and date at job start Fri Apr 10 2020 17:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99678 * 2 1 4 4 H 1.48497 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47041 * 300.00352 * 3 2 1 6 6 H 1.48503 * 109.46807 * 60.00003 * 3 2 1 7 7 C 1.38809 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99986 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00252 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49870 * 34.93928 * 10 9 7 12 12 C 1.53038 * 109.52695 * 274.85292 * 10 9 7 13 13 C 1.53037 * 109.53902 * 178.66737 * 12 10 9 14 14 C 1.52754 * 109.38374 * 61.24301 * 13 12 10 15 15 N 1.46928 * 109.01096 * 305.58485 * 14 13 12 16 16 C 1.34771 * 120.63219 * 233.58477 * 15 14 13 17 17 O 1.21278 * 120.00242 * 4.66067 * 16 15 14 18 18 C 1.50705 * 119.99631 * 184.65541 * 16 15 14 19 19 H 1.08997 * 109.54336 * 321.88971 * 18 16 15 20 20 C 1.54198 * 109.53892 * 201.72453 * 18 16 15 21 21 C 1.46283 * 111.99278 * 162.59058 * 20 18 16 22 22 C 1.54127 * 112.19325 * 61.42076 * 21 20 18 23 23 O 1.40327 * 108.83729 * 280.37157 * 22 21 20 24 24 C 1.44123 * 116.49687 * 94.84633 * 23 22 21 25 25 C 1.50629 * 109.53474 * 82.14075 * 18 16 15 26 26 C 1.46930 * 118.73090 * 53.30792 * 15 14 13 27 27 H 0.96996 * 120.00104 * 0.02562 * 1 2 3 28 28 H 0.97009 * 119.99615 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46008 * 298.69089 * 12 10 9 30 30 H 1.09008 * 109.45712 * 58.66221 * 12 10 9 31 31 H 1.09004 * 109.49597 * 181.32194 * 13 12 10 32 32 H 1.09008 * 109.49751 * 301.38445 * 13 12 10 33 33 H 1.09009 * 109.51157 * 185.70481 * 14 13 12 34 34 H 1.08993 * 109.43483 * 65.42570 * 14 13 12 35 35 H 1.09003 * 108.97682 * 41.94199 * 20 18 16 36 36 H 1.09005 * 108.97516 * 283.24278 * 20 18 16 37 37 H 1.08994 * 108.93708 * 300.71659 * 21 20 18 38 38 H 1.09000 * 108.93518 * 182.11468 * 21 20 18 39 39 H 1.08996 * 109.59776 * 40.21732 * 22 21 20 40 40 H 1.09001 * 109.59346 * 160.52733 * 22 21 20 41 41 H 1.08995 * 108.70767 * 197.05148 * 24 23 22 42 42 H 1.09006 * 108.56969 * 79.14365 * 24 23 22 43 43 H 1.08993 * 108.88578 * 330.97507 * 25 18 16 44 44 H 1.08996 * 108.87932 * 89.43758 * 25 18 16 45 45 H 1.09006 * 109.58677 * 66.43641 * 26 15 14 46 46 H 1.09004 * 109.58085 * 186.71120 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0584 -3.6566 -0.0005 11 1 2.9697 -3.5505 0.5879 12 6 2.4198 -4.0386 -1.4377 13 6 3.2139 -5.3468 -1.4353 14 6 2.3543 -6.4606 -0.8404 15 7 1.8776 -6.0413 0.4846 16 6 2.0807 -6.8202 1.5656 17 8 2.7346 -7.8367 1.4664 18 6 1.4953 -6.4278 2.8977 19 1 1.5586 -5.3465 3.0195 20 6 2.2797 -7.1210 4.0300 21 6 2.0447 -6.4867 5.3271 22 6 0.5634 -6.5528 5.7476 23 8 -0.1449 -5.5477 5.0712 24 6 -0.7986 -5.9348 3.8465 25 6 0.0538 -6.8601 2.9615 26 6 1.1807 -4.7539 0.6097 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0002 29 1 1.5072 -4.1688 -2.0193 30 1 3.0243 -3.2480 -1.8825 31 1 3.4912 -5.6060 -2.4572 32 1 4.1147 -5.2246 -0.8338 33 1 2.9501 -7.3683 -0.7440 34 1 1.5016 -6.6484 -1.4929 35 1 3.3446 -7.0773 3.8018 36 1 1.9732 -8.1656 4.0854 37 1 2.3502 -5.4420 5.2705 38 1 2.6493 -6.9900 6.0816 39 1 0.1525 -7.5281 5.4871 40 1 0.4815 -6.3970 6.8233 41 1 -1.0409 -5.0356 3.2802 42 1 -1.7272 -6.4483 4.0960 43 1 -0.3589 -6.8620 1.9527 44 1 0.0067 -7.8728 3.3617 45 1 0.2302 -4.7997 0.0779 46 1 1.0001 -4.5370 1.6626 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999033865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:43 Heat of formation + Delta-G solvation = -98.208490 kcal Electronic energy + Delta-G solvation = -25578.992281 eV Core-core repulsion = 22081.528812 eV Total energy + Delta-G solvation = -3497.463468 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75281 -39.95605 -38.71092 -36.08912 -35.76645 -34.12922 -33.43369 -32.77634 -30.00389 -28.41296 -27.09900 -26.05132 -25.68743 -23.62716 -22.33472 -21.80602 -21.17052 -20.05964 -19.12170 -18.34534 -17.82922 -17.34228 -16.73821 -16.51818 -16.11020 -15.87327 -15.57526 -15.27696 -15.13182 -15.08623 -14.79509 -14.45422 -14.26120 -13.99997 -13.84466 -13.62375 -13.17300 -12.93181 -12.88594 -12.60170 -12.37550 -12.27250 -12.18999 -12.09186 -11.86421 -11.78788 -11.70940 -11.58841 -11.56490 -11.37400 -10.97371 -10.68625 -10.34529 -9.70394 -9.00691 -7.94229 -5.22590 1.47861 1.49016 1.52235 1.58096 1.91831 2.56865 2.93984 3.35134 3.39277 3.54399 3.77446 3.86172 3.90803 3.99036 4.03088 4.05153 4.09167 4.24327 4.32170 4.34333 4.37702 4.48647 4.58962 4.59629 4.65375 4.75180 4.80555 4.81994 4.91473 4.94780 5.01078 5.03444 5.06961 5.08942 5.16605 5.23170 5.35608 5.38413 5.47993 5.49412 5.57933 6.26699 6.34393 6.49761 7.08538 7.35390 8.06902 8.32155 9.28846 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.004836 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.465799 B = 5788.911726 C = 7131.719532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.164 3.836 11 H 0.034 0.966 12 C -0.128 4.128 13 C -0.121 4.121 14 C 0.110 3.890 15 N -0.603 5.603 16 C 0.521 3.479 17 O -0.577 6.577 18 C -0.104 4.104 19 H 0.093 0.907 20 C -0.092 4.092 21 C -0.149 4.149 22 C 0.062 3.938 23 O -0.404 6.404 24 C 0.064 3.936 25 C -0.135 4.135 26 C 0.113 3.887 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 -16.932 6.426 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.055 3.945 11 H 0.052 0.948 12 C -0.169 4.169 13 C -0.160 4.160 14 C -0.012 4.012 15 N -0.335 5.335 16 C 0.311 3.689 17 O -0.457 6.457 18 C -0.125 4.125 19 H 0.111 0.889 20 C -0.130 4.130 21 C -0.186 4.186 22 C -0.014 4.014 23 O -0.323 6.323 24 C -0.012 4.012 25 C -0.173 4.173 26 C -0.011 4.011 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.841 -17.169 6.436 18.355 hybrid contribution 0.194 1.136 -0.434 1.231 sum 1.035 -16.033 6.002 17.151 Atomic orbital electron populations 1.69787 1.06338 1.25962 1.59404 1.25424 0.96285 1.00612 1.03710 0.85199 0.78210 0.80444 0.76666 1.19461 1.22072 1.22095 1.19519 0.91171 0.85082 1.41066 0.91189 1.42407 1.05500 1.00370 1.88742 1.20625 0.94050 0.85160 0.94705 0.94791 1.22095 0.99829 0.96422 0.98525 1.21763 0.98010 0.94240 1.01996 1.21616 0.98960 0.97947 0.82629 1.48155 1.57064 1.19874 1.08370 1.20958 0.79068 0.82733 0.86168 1.90625 1.41683 1.27492 1.85914 1.21131 0.97093 1.02644 0.91665 0.88859 1.20381 0.99538 0.99796 0.93293 1.21140 0.98654 1.01656 0.97199 1.22506 0.90084 0.91790 0.97058 1.87522 1.69439 1.38446 1.36941 1.23028 0.94183 0.99456 0.84571 1.21814 0.92506 1.01031 1.01932 1.21974 0.95262 0.81299 1.02561 0.93975 0.79075 0.92237 0.93634 0.88801 0.92850 0.89533 0.89952 0.92838 0.91012 0.92430 0.89061 0.91652 0.88421 0.89620 0.90805 0.90071 0.89859 0.90332 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.94 13.06 21.65 0.28 -56.66 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 7 C -0.24 -12.68 9.93 84.03 0.83 -11.84 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -34.57 5.12 -322.59 -1.65 -36.23 16 10 C 0.16 6.12 2.92 45.07 0.13 6.25 16 11 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 12 C -0.13 -4.26 5.47 30.62 0.17 -4.09 16 13 C -0.12 -3.19 6.06 30.52 0.19 -3.00 16 14 C 0.11 2.80 6.41 86.22 0.55 3.36 16 15 N -0.60 -16.88 2.98 -819.72 -2.44 -19.32 16 16 C 0.52 15.14 6.53 87.66 0.57 15.71 16 17 O -0.58 -19.68 15.51 -3.02 -0.05 -19.73 16 18 C -0.10 -2.55 1.40 -11.90 -0.02 -2.56 16 19 H 0.09 2.54 5.91 -2.39 -0.01 2.53 16 20 C -0.09 -2.06 4.18 28.93 0.12 -1.94 16 21 C -0.15 -2.84 5.47 28.91 0.16 -2.68 16 22 C 0.06 1.11 6.37 72.36 0.46 1.57 16 23 O -0.40 -9.47 10.20 -143.50 -1.46 -10.93 16 24 C 0.06 1.27 6.67 72.26 0.48 1.75 16 25 C -0.13 -2.67 4.79 30.10 0.14 -2.53 16 26 C 0.11 3.39 5.76 86.36 0.50 3.89 16 27 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.38 18.86 7.80 -92.70 -0.72 18.14 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 1.50 8.14 -2.38 -0.02 1.49 16 33 H 0.09 2.27 7.00 -2.38 -0.02 2.25 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.35 7.84 -2.39 -0.02 1.33 16 36 H 0.07 1.50 7.60 -2.38 -0.02 1.48 16 37 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 0.96 6.98 -2.39 -0.02 0.95 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.08 1.59 7.75 -2.39 -0.02 1.57 16 44 H 0.08 1.46 6.84 -2.39 -0.02 1.45 16 45 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 46 H 0.09 2.70 5.42 -2.39 -0.01 2.69 16 Total: -1.00 -64.97 352.09 1.70 -63.27 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.24 Total: 31.68 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 4.76 Total: 0.58 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.81 Total: -112.20 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -1.51 Total: -30.66 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.97 1.70 -63.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999033865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.941 kcal (2) G-P(sol) polarization free energy of solvation -64.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds