Wall clock time and date at job start Fri Apr 10 2020 17:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00294 * 2 1 4 4 H 1.48507 * 109.47142 * 89.99741 * 3 2 1 5 5 H 1.48499 * 109.47654 * 210.00307 * 3 2 1 6 6 H 1.48506 * 109.46957 * 330.00546 * 3 2 1 7 7 C 1.38812 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00074 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99769 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.49981 * 325.06524 * 10 9 7 12 12 C 1.53045 * 109.49620 * 85.16226 * 10 9 7 13 13 C 1.53048 * 109.53372 * 181.31510 * 12 10 9 14 14 C 1.53192 * 109.31303 * 298.63065 * 13 12 10 15 15 N 1.46923 * 108.77137 * 54.63886 * 14 13 12 16 16 C 1.34780 * 120.62705 * 126.41468 * 15 14 13 17 17 O 1.21274 * 120.00465 * 355.36756 * 16 15 14 18 18 C 1.50709 * 119.99617 * 175.37074 * 16 15 14 19 19 H 1.08994 * 108.94597 * 38.59225 * 18 16 15 20 20 C 1.46287 * 108.95869 * 157.35384 * 18 16 15 21 21 C 1.54202 * 112.07323 * 181.55752 * 20 18 16 22 22 C 1.50413 * 108.76935 * 282.18921 * 21 20 18 23 23 O 1.44188 * 112.77658 * 92.57827 * 22 21 20 24 24 C 1.44192 * 116.92539 * 318.47482 * 23 22 21 25 25 C 1.50415 * 112.78049 * 318.47718 * 24 23 22 26 26 C 1.46926 * 118.74333 * 306.38865 * 15 14 13 27 27 H 0.96999 * 119.99684 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00276 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.45940 * 301.33089 * 12 10 9 30 30 H 1.08995 * 109.46494 * 61.29636 * 12 10 9 31 31 H 1.09005 * 109.49344 * 178.68322 * 13 12 10 32 32 H 1.08998 * 109.52185 * 58.60391 * 13 12 10 33 33 H 1.08994 * 109.58459 * 294.85018 * 14 13 12 34 34 H 1.09000 * 109.69911 * 174.49098 * 14 13 12 35 35 H 1.08996 * 108.96301 * 302.22641 * 20 18 16 36 36 H 1.09000 * 108.95716 * 60.89041 * 20 18 16 37 37 H 1.08999 * 109.58704 * 41.97003 * 21 20 18 38 38 H 1.08996 * 109.59043 * 162.26134 * 21 20 18 39 39 H 1.08996 * 108.82412 * 213.42764 * 22 21 20 40 40 H 1.09005 * 108.82638 * 331.72966 * 22 21 20 41 41 H 1.09004 * 108.81591 * 79.32337 * 24 23 22 42 42 H 1.08991 * 108.82131 * 197.62078 * 24 23 22 43 43 H 1.09005 * 109.58424 * 332.78814 * 25 24 23 44 44 H 1.08993 * 109.58709 * 212.35727 * 25 24 23 45 45 H 1.09005 * 109.58582 * 293.82163 * 26 15 14 46 46 H 1.08999 * 109.70677 * 173.47057 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 2.9694 -3.5502 -0.5910 12 6 2.4188 -4.0396 1.4345 13 6 3.2125 -5.3482 1.4316 14 6 2.3478 -6.4640 0.8367 15 7 1.8768 -6.0411 -0.4892 16 6 2.0793 -6.8199 -1.5704 17 8 2.7277 -7.8398 -1.4703 18 6 1.5000 -6.4231 -2.9039 19 1 1.5818 -5.3422 -3.0178 20 6 2.2666 -7.0724 -3.9673 21 6 1.7565 -6.6837 -5.3696 22 6 0.5044 -7.4639 -5.6626 23 8 -0.6949 -6.7555 -5.2898 24 6 -0.6696 -6.0435 -4.0362 25 6 0.0097 -6.8178 -2.9401 26 6 1.1803 -4.7534 -0.6140 27 1 -0.4849 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0016 29 1 3.0231 -3.2494 1.8799 30 1 1.5060 -4.1699 2.0157 31 1 3.4892 -5.6080 2.4535 32 1 4.1136 -5.2263 0.8305 33 1 1.4925 -6.6491 1.4865 34 1 2.9383 -7.3751 0.7412 35 1 3.3131 -6.7814 -3.8778 36 1 2.1899 -8.1534 -3.8496 37 1 1.5364 -5.6165 -5.3955 38 1 2.5180 -6.9180 -6.1134 39 1 0.4670 -7.6811 -6.7301 40 1 0.5408 -8.4060 -5.1154 41 1 -0.1429 -5.0998 -4.1785 42 1 -1.6943 -5.8295 -3.7326 43 1 -0.0807 -7.8860 -3.1374 44 1 -0.4546 -6.5802 -1.9831 45 1 0.2296 -4.7992 -0.0826 46 1 1.0003 -4.5334 -1.6662 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999033868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:52 Heat of formation + Delta-G solvation = -78.141762 kcal Electronic energy + Delta-G solvation = -25477.177588 eV Core-core repulsion = 21980.584278 eV Total energy + Delta-G solvation = -3496.593310 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76690 -38.90372 -37.38922 -34.82633 -34.36299 -32.88319 -32.00780 -31.31806 -28.38215 -27.86344 -26.04274 -24.84898 -23.86275 -22.43774 -21.14493 -20.67192 -19.99788 -18.90887 -17.54582 -17.19043 -16.69246 -16.35436 -15.55255 -15.33965 -14.84200 -14.48585 -14.15542 -13.98660 -13.88280 -13.60657 -13.44766 -13.32636 -13.22714 -12.82589 -12.65334 -12.43676 -12.24137 -11.62618 -11.41456 -11.25022 -11.04232 -10.95791 -10.94086 -10.87761 -10.67008 -10.54085 -10.47403 -10.38892 -10.13704 -9.76884 -9.62041 -9.50549 -8.98569 -8.45583 -7.08263 -5.86315 -3.16364 2.67208 3.06249 3.37954 3.43997 3.44990 3.66612 4.33363 4.48810 4.53623 4.61475 4.74000 4.86773 4.97590 5.11972 5.18575 5.23347 5.29946 5.35208 5.41093 5.44026 5.49639 5.50796 5.53890 5.61245 5.70684 5.74623 5.79563 5.84783 5.88440 5.92824 5.95855 6.06277 6.09230 6.18266 6.29328 6.33428 6.38905 6.67706 6.77111 6.95422 7.11348 7.51872 7.62308 8.24623 8.31745 9.43260 9.96761 10.32020 11.35968 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.004523 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.810905 B = 6189.075560 C = 7473.196655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.167 3.833 11 H 0.051 0.949 12 C -0.137 4.137 13 C -0.132 4.132 14 C 0.112 3.888 15 N -0.603 5.603 16 C 0.520 3.480 17 O -0.552 6.552 18 C -0.109 4.109 19 H 0.099 0.901 20 C -0.109 4.109 21 C -0.154 4.154 22 C 0.062 3.938 23 O -0.395 6.395 24 C 0.064 3.936 25 C -0.141 4.141 26 C 0.098 3.902 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -14.853 -5.903 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.056 3.944 11 H 0.069 0.931 12 C -0.178 4.178 13 C -0.171 4.171 14 C -0.011 4.011 15 N -0.336 5.336 16 C 0.308 3.692 17 O -0.430 6.430 18 C -0.130 4.130 19 H 0.117 0.883 20 C -0.146 4.146 21 C -0.191 4.191 22 C -0.014 4.014 23 O -0.315 6.315 24 C -0.013 4.013 25 C -0.179 4.179 26 C -0.025 4.025 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.575 -15.227 -5.973 16.432 hybrid contribution 0.430 1.159 0.444 1.314 sum 2.005 -14.068 -5.529 15.248 Atomic orbital electron populations 1.69651 1.05102 1.25836 1.57311 1.24731 0.95504 0.97685 1.02647 0.86208 0.78702 0.83791 0.77579 1.21662 1.20729 1.21698 1.19191 0.90984 0.83839 1.43242 0.91162 1.42310 1.05750 0.99475 1.88726 1.20487 0.94516 0.85848 0.93540 0.93134 1.22275 0.99679 0.95425 1.00380 1.21922 0.98857 0.95865 1.00456 1.21603 0.98343 0.98279 0.82836 1.48122 1.57322 1.20335 1.07776 1.20614 0.79598 0.83305 0.85643 1.90642 1.40762 1.26128 1.85485 1.20520 0.96357 1.03042 0.93040 0.88310 1.20497 0.99725 1.01730 0.92680 1.21938 0.98094 1.01855 0.97250 1.22314 0.84459 0.94376 1.00232 1.88254 1.36173 1.68902 1.38163 1.22309 1.01727 0.94234 0.82993 1.21898 0.93166 1.02107 1.00683 1.22227 0.95824 0.82021 1.02468 0.93393 0.78192 0.91558 0.92467 0.91440 0.91976 0.91753 0.89532 0.91307 0.90689 0.90411 0.90160 0.89702 0.93107 0.92462 0.88909 0.90101 0.89779 0.91280 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -16.66 5.12 -53.31 -0.27 -16.93 16 10 C 0.17 3.05 2.92 -67.81 -0.20 2.85 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.29 5.47 -26.68 -0.15 -2.43 16 13 C -0.13 -1.81 6.08 -26.61 -0.16 -1.98 16 14 C 0.11 1.50 6.44 -3.71 -0.02 1.48 16 15 N -0.60 -8.59 2.97 -172.77 -0.51 -9.10 16 16 C 0.52 7.60 6.68 -10.98 -0.07 7.53 16 17 O -0.55 -9.53 15.37 5.56 0.09 -9.45 16 18 C -0.11 -1.30 1.30 -94.33 -0.12 -1.42 16 19 H 0.10 1.20 5.63 -51.93 -0.29 0.91 16 20 C -0.11 -1.22 4.05 -29.29 -0.12 -1.33 16 21 C -0.15 -1.45 5.61 -27.39 -0.15 -1.61 16 22 C 0.06 0.61 6.26 35.87 0.22 0.83 16 23 O -0.40 -4.71 10.88 -35.23 -0.38 -5.09 16 24 C 0.06 0.69 6.26 35.87 0.22 0.91 16 25 C -0.14 -1.52 4.79 -27.39 -0.13 -1.65 16 26 C 0.10 1.46 5.33 -3.71 -0.02 1.44 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.38 9.36 7.80 -40.82 -0.32 9.04 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 35 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 36 H 0.07 0.89 7.20 -51.93 -0.37 0.51 16 37 H 0.08 0.79 7.15 -51.93 -0.37 0.41 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.49 6.68 -51.93 -0.35 0.14 16 41 H 0.06 0.63 6.67 -51.93 -0.35 0.28 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.89 7.15 -51.93 -0.37 0.52 16 44 H 0.08 0.89 7.62 -51.93 -0.40 0.50 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 1.24 5.39 -51.93 -0.28 0.96 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -30.13 348.80 -8.72 -38.85 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.65 Total: 8.18 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.94 Total: -2.22 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.06 Total: -52.13 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.30 Total: -14.54 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.13 -8.72 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999033868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.290 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds