Wall clock time and date at job start Fri Apr 10 2020 17:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00294 * 2 1 4 4 H 1.48507 * 109.47142 * 89.99741 * 3 2 1 5 5 H 1.48499 * 109.47654 * 210.00307 * 3 2 1 6 6 H 1.48506 * 109.46957 * 330.00546 * 3 2 1 7 7 C 1.38812 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00074 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99769 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.49981 * 325.06524 * 10 9 7 12 12 C 1.53045 * 109.49620 * 85.16226 * 10 9 7 13 13 C 1.53048 * 109.53372 * 181.31510 * 12 10 9 14 14 C 1.53192 * 109.31303 * 298.63065 * 13 12 10 15 15 N 1.46923 * 108.77137 * 54.63886 * 14 13 12 16 16 C 1.34780 * 120.62705 * 126.41468 * 15 14 13 17 17 O 1.21274 * 120.00465 * 355.36756 * 16 15 14 18 18 C 1.50709 * 119.99617 * 175.37074 * 16 15 14 19 19 H 1.08994 * 108.94597 * 38.59225 * 18 16 15 20 20 C 1.46287 * 108.95869 * 157.35384 * 18 16 15 21 21 C 1.54202 * 112.07323 * 181.55752 * 20 18 16 22 22 C 1.50413 * 108.76935 * 282.18921 * 21 20 18 23 23 O 1.44188 * 112.77658 * 92.57827 * 22 21 20 24 24 C 1.44192 * 116.92539 * 318.47482 * 23 22 21 25 25 C 1.50415 * 112.78049 * 318.47718 * 24 23 22 26 26 C 1.46926 * 118.74333 * 306.38865 * 15 14 13 27 27 H 0.96999 * 119.99684 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00276 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.45940 * 301.33089 * 12 10 9 30 30 H 1.08995 * 109.46494 * 61.29636 * 12 10 9 31 31 H 1.09005 * 109.49344 * 178.68322 * 13 12 10 32 32 H 1.08998 * 109.52185 * 58.60391 * 13 12 10 33 33 H 1.08994 * 109.58459 * 294.85018 * 14 13 12 34 34 H 1.09000 * 109.69911 * 174.49098 * 14 13 12 35 35 H 1.08996 * 108.96301 * 302.22641 * 20 18 16 36 36 H 1.09000 * 108.95716 * 60.89041 * 20 18 16 37 37 H 1.08999 * 109.58704 * 41.97003 * 21 20 18 38 38 H 1.08996 * 109.59043 * 162.26134 * 21 20 18 39 39 H 1.08996 * 108.82412 * 213.42764 * 22 21 20 40 40 H 1.09005 * 108.82638 * 331.72966 * 22 21 20 41 41 H 1.09004 * 108.81591 * 79.32337 * 24 23 22 42 42 H 1.08991 * 108.82131 * 197.62078 * 24 23 22 43 43 H 1.09005 * 109.58424 * 332.78814 * 25 24 23 44 44 H 1.08993 * 109.58709 * 212.35727 * 25 24 23 45 45 H 1.09005 * 109.58582 * 293.82163 * 26 15 14 46 46 H 1.08999 * 109.70677 * 173.47057 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 2.9694 -3.5502 -0.5910 12 6 2.4188 -4.0396 1.4345 13 6 3.2125 -5.3482 1.4316 14 6 2.3478 -6.4640 0.8367 15 7 1.8768 -6.0411 -0.4892 16 6 2.0793 -6.8199 -1.5704 17 8 2.7277 -7.8398 -1.4703 18 6 1.5000 -6.4231 -2.9039 19 1 1.5818 -5.3422 -3.0178 20 6 2.2666 -7.0724 -3.9673 21 6 1.7565 -6.6837 -5.3696 22 6 0.5044 -7.4639 -5.6626 23 8 -0.6949 -6.7555 -5.2898 24 6 -0.6696 -6.0435 -4.0362 25 6 0.0097 -6.8178 -2.9401 26 6 1.1803 -4.7534 -0.6140 27 1 -0.4849 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0016 29 1 3.0231 -3.2494 1.8799 30 1 1.5060 -4.1699 2.0157 31 1 3.4892 -5.6080 2.4535 32 1 4.1136 -5.2263 0.8305 33 1 1.4925 -6.6491 1.4865 34 1 2.9383 -7.3751 0.7412 35 1 3.3131 -6.7814 -3.8778 36 1 2.1899 -8.1534 -3.8496 37 1 1.5364 -5.6165 -5.3955 38 1 2.5180 -6.9180 -6.1134 39 1 0.4670 -7.6811 -6.7301 40 1 0.5408 -8.4060 -5.1154 41 1 -0.1429 -5.0998 -4.1785 42 1 -1.6943 -5.8295 -3.7326 43 1 -0.0807 -7.8860 -3.1374 44 1 -0.4546 -6.5802 -1.9831 45 1 0.2296 -4.7992 -0.0826 46 1 1.0003 -4.5334 -1.6662 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999033868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:52 Heat of formation + Delta-G solvation = -96.851870 kcal Electronic energy + Delta-G solvation = -25477.988919 eV Core-core repulsion = 21980.584278 eV Total energy + Delta-G solvation = -3497.404641 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86486 -39.91085 -38.68952 -36.08410 -35.75342 -33.99659 -33.34823 -32.74243 -29.99887 -28.82098 -27.02497 -25.98398 -25.68367 -23.64975 -22.37470 -21.48627 -21.23774 -20.14535 -19.16815 -18.48348 -17.59644 -17.46007 -16.83326 -16.40737 -16.37671 -15.69369 -15.49239 -15.33192 -15.13114 -14.82564 -14.75283 -14.51036 -14.26827 -14.07516 -13.78952 -13.54583 -13.33029 -12.96752 -12.85235 -12.49620 -12.37960 -12.34537 -12.27322 -12.13653 -11.86953 -11.85999 -11.75279 -11.65172 -11.56863 -11.41774 -10.94794 -10.63442 -10.44143 -9.70290 -9.00582 -7.93960 -5.22331 1.48737 1.49277 1.51321 1.57543 1.91512 2.57084 2.86326 3.28471 3.39507 3.56342 3.71089 3.85289 3.90313 3.94565 4.01110 4.05318 4.08971 4.20829 4.33390 4.35207 4.40288 4.45410 4.55654 4.56806 4.67848 4.71053 4.79746 4.82059 4.86302 4.91971 5.00742 5.03487 5.07285 5.09488 5.10486 5.19318 5.32167 5.36430 5.48100 5.49649 5.58044 6.26742 6.29909 6.34843 7.07623 7.35733 8.07359 8.32516 9.28780 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.004523 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.810905 B = 6189.075560 C = 7473.196655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.066 4.066 3 Si 0.964 3.036 4 H -0.289 1.289 5 H -0.272 1.272 6 H -0.296 1.296 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.164 3.836 11 H 0.036 0.964 12 C -0.129 4.129 13 C -0.121 4.121 14 C 0.110 3.890 15 N -0.602 5.602 16 C 0.519 3.481 17 O -0.578 6.578 18 C -0.104 4.104 19 H 0.098 0.902 20 C -0.106 4.106 21 C -0.146 4.146 22 C 0.058 3.942 23 O -0.412 6.412 24 C 0.064 3.936 25 C -0.132 4.132 26 C 0.111 3.889 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -15.675 -6.188 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.794 3.206 4 H -0.217 1.217 5 H -0.198 1.198 6 H -0.222 1.222 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.055 3.945 11 H 0.055 0.945 12 C -0.170 4.170 13 C -0.159 4.159 14 C -0.012 4.012 15 N -0.334 5.334 16 C 0.308 3.692 17 O -0.459 6.459 18 C -0.125 4.125 19 H 0.116 0.884 20 C -0.144 4.144 21 C -0.183 4.183 22 C -0.018 4.018 23 O -0.332 6.332 24 C -0.012 4.012 25 C -0.170 4.170 26 C -0.012 4.012 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.120 0.880 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.955 -16.083 -6.253 17.366 hybrid contribution 0.383 1.333 0.547 1.491 sum 2.338 -14.749 -5.706 15.986 Atomic orbital electron populations 1.69780 1.06321 1.26018 1.59304 1.25409 0.96253 1.00561 1.03686 0.85282 0.77804 0.80210 0.77309 1.21674 1.19755 1.22230 1.19482 0.91180 0.85072 1.41215 0.91157 1.42410 1.05516 1.00364 1.88767 1.20634 0.94124 0.85133 0.94643 0.94545 1.22105 0.99790 0.96380 0.98678 1.21828 0.97985 0.94193 1.01929 1.21698 0.98950 0.97899 0.82645 1.48147 1.57104 1.19849 1.08260 1.21034 0.79009 0.82813 0.86332 1.90631 1.41984 1.27310 1.85934 1.20549 0.97153 1.02941 0.91850 0.88416 1.20476 0.99168 1.01187 0.93550 1.21893 0.98527 1.01410 0.96489 1.22454 0.83818 0.94150 1.01329 1.88234 1.37347 1.69156 1.38485 1.22324 1.02214 0.93943 0.82735 1.21836 0.92132 1.02060 1.00952 1.21993 0.95261 0.81201 1.02758 0.93987 0.79055 0.93667 0.92345 0.88985 0.92723 0.90051 0.89603 0.92191 0.91317 0.90956 0.88295 0.87996 0.92963 0.92773 0.88045 0.90150 0.89415 0.90355 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.97 13.06 21.65 0.28 -55.69 16 2 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.96 44.50 29.55 68.60 2.03 46.53 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.24 -12.45 9.93 84.03 0.83 -11.62 16 8 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 9 N -0.73 -33.65 5.12 -322.57 -1.65 -35.30 16 10 C 0.16 5.90 2.92 45.07 0.13 6.03 16 11 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 12 C -0.13 -4.18 5.47 30.63 0.17 -4.02 16 13 C -0.12 -3.09 6.08 30.67 0.19 -2.90 16 14 C 0.11 2.74 6.44 86.36 0.56 3.29 16 15 N -0.60 -16.24 2.97 -818.91 -2.43 -18.67 16 16 C 0.52 14.55 6.68 87.66 0.59 15.14 16 17 O -0.58 -19.43 15.37 -3.01 -0.05 -19.47 16 18 C -0.10 -2.38 1.30 -13.20 -0.02 -2.40 16 19 H 0.10 2.28 5.63 -2.39 -0.01 2.26 16 20 C -0.11 -2.26 4.05 28.93 0.12 -2.15 16 21 C -0.15 -2.52 5.61 30.17 0.17 -2.35 16 22 C 0.06 1.03 6.26 71.15 0.45 1.48 16 23 O -0.41 -9.20 10.88 -148.98 -1.62 -10.83 16 24 C 0.06 1.29 6.26 71.15 0.45 1.74 16 25 C -0.13 -2.67 4.79 30.17 0.14 -2.52 16 26 C 0.11 3.18 5.33 86.36 0.46 3.64 16 27 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.38 18.39 7.80 -92.71 -0.72 17.67 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 2.22 7.00 -2.39 -0.02 2.20 16 35 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 36 H 0.07 1.56 7.20 -2.39 -0.02 1.54 16 37 H 0.07 1.36 7.15 -2.39 -0.02 1.34 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 0.91 6.68 -2.38 -0.02 0.90 16 41 H 0.05 1.13 6.67 -2.38 -0.02 1.11 16 42 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.08 1.65 7.15 -2.38 -0.02 1.64 16 44 H 0.09 1.71 7.62 -2.39 -0.02 1.70 16 45 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 46 H 0.09 2.57 5.39 -2.39 -0.01 2.55 16 Total: -1.00 -63.48 348.80 1.50 -61.98 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.25 Total: 31.23 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 4.69 Total: 0.22 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -3.80 Total: -109.66 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.67 Total: -30.30 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.48 1.50 -61.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999033868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.872 kcal (2) G-P(sol) polarization free energy of solvation -63.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds