Wall clock time and date at job start Fri Apr 10 2020 17:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00141 * 2 1 4 4 H 1.48500 * 109.47383 * 270.00112 * 3 2 1 5 5 H 1.48502 * 109.47269 * 29.99909 * 3 2 1 6 6 H 1.48502 * 109.47282 * 149.99650 * 3 2 1 7 7 C 1.38819 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99863 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99612 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99689 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49746 * 35.07204 * 10 9 7 12 12 C 1.53031 * 109.49994 * 275.00501 * 10 9 7 13 13 C 1.53042 * 109.52740 * 178.65871 * 12 10 9 14 14 C 1.53160 * 109.32633 * 61.37413 * 13 12 10 15 15 N 1.46926 * 108.76895 * 305.35298 * 14 13 12 16 16 C 1.34774 * 120.63316 * 233.63217 * 15 14 13 17 17 O 1.21285 * 119.99857 * 175.58964 * 16 15 14 18 18 C 1.50696 * 119.99980 * 355.59621 * 16 15 14 19 19 C 1.53003 * 109.47069 * 277.88944 * 18 16 15 20 20 C 1.52998 * 109.47467 * 180.02562 * 19 18 16 21 21 C 1.53004 * 109.47033 * 59.99714 * 20 19 18 22 22 O 1.42900 * 109.46966 * 60.00335 * 21 20 19 23 23 C 1.52998 * 109.47222 * 300.00086 * 21 20 19 24 24 C 1.52998 * 109.47186 * 60.00008 * 23 21 20 25 25 C 1.46929 * 118.73533 * 53.60963 * 15 14 13 26 26 H 0.96995 * 120.00149 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00440 * 0.02562 * 9 7 2 28 28 H 1.09008 * 109.46407 * 298.67195 * 12 10 9 29 29 H 1.08999 * 109.46280 * 58.64220 * 12 10 9 30 30 H 1.09002 * 109.49620 * 181.31184 * 13 12 10 31 31 H 1.08992 * 109.49955 * 301.40623 * 13 12 10 32 32 H 1.09004 * 109.58676 * 185.56965 * 14 13 12 33 33 H 1.09002 * 109.59439 * 65.14134 * 14 13 12 34 34 H 1.09000 * 109.47304 * 37.88575 * 18 16 15 35 35 H 1.09000 * 109.46756 * 299.99967 * 19 18 16 36 36 H 1.08994 * 109.47208 * 59.99466 * 19 18 16 37 37 H 1.09006 * 109.46973 * 300.00121 * 20 19 18 38 38 H 1.09001 * 109.47394 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47021 * 180.02562 * 21 20 19 40 40 H 0.96695 * 114.00192 * 60.00452 * 22 21 20 41 41 H 1.09000 * 109.47042 * 300.00170 * 23 21 20 42 42 H 1.09005 * 109.47209 * 179.97438 * 23 21 20 43 43 H 1.09004 * 109.47548 * 179.97438 * 24 23 21 44 44 H 1.09006 * 109.46973 * 59.99700 * 24 23 21 45 45 H 1.09003 * 109.58244 * 186.60318 * 25 15 14 46 46 H 1.09007 * 109.58553 * 66.18194 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 1 3.5655 -3.2071 -0.5882 12 6 4.2591 -2.9747 1.4387 13 6 4.9949 -4.3166 1.4378 14 6 6.3951 -4.1265 0.8469 15 7 6.2684 -3.5073 -0.4794 16 6 6.8434 -4.0730 -1.5592 17 8 6.6653 -3.5969 -2.6604 18 6 7.7074 -5.2971 -1.3982 19 6 9.1155 -4.8752 -0.9736 20 6 9.9930 -6.1179 -0.8108 21 6 10.0652 -6.8692 -2.1418 22 8 10.6283 -6.0160 -3.1404 23 6 8.6572 -7.2911 -2.5663 24 6 7.7797 -6.0484 -2.7291 25 6 5.5025 -2.2599 -0.6064 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3622 -0.0004 28 1 4.8272 -2.2494 2.0214 29 1 3.2713 -3.1024 1.8815 30 1 5.0787 -4.6862 2.4598 31 1 4.4400 -5.0354 0.8350 32 1 6.8864 -5.0950 0.7526 33 1 6.9818 -3.4786 1.4981 34 1 7.2778 -5.9475 -0.6363 35 1 9.5451 -4.2248 -1.7356 36 1 9.0640 -4.3396 -0.0258 37 1 9.5635 -6.7687 -0.0491 38 1 10.9963 -5.8173 -0.5088 39 1 10.6900 -7.7547 -2.0257 40 1 11.5225 -5.7093 -2.9370 41 1 8.2278 -7.9419 -1.8045 42 1 8.7086 -7.8260 -3.5147 43 1 6.7766 -6.3490 -3.0320 44 1 8.2092 -5.3976 -3.4908 45 1 5.4049 -1.9966 -1.6597 46 1 6.0164 -1.4597 -0.0737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999049349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:59 Heat of formation + Delta-G solvation = -88.390350 kcal Electronic energy + Delta-G solvation = -25106.247289 eV Core-core repulsion = 21609.209567 eV Total energy + Delta-G solvation = -3497.037722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58730 -38.90299 -37.33829 -35.21648 -34.58099 -32.23717 -31.43229 -31.09239 -30.43191 -28.70443 -25.44306 -23.99900 -23.03448 -22.81262 -21.92991 -20.47776 -19.81659 -18.79195 -17.63652 -17.39731 -16.84008 -16.31365 -15.57510 -15.21886 -14.75968 -14.63248 -14.13729 -14.07826 -13.73133 -13.65495 -13.40301 -13.28855 -12.88790 -12.72781 -12.52744 -12.48247 -12.29509 -12.21362 -11.56042 -11.40075 -11.31574 -11.07686 -11.00310 -10.80575 -10.57563 -10.49397 -10.46456 -10.36071 -10.09702 -10.08255 -9.60300 -9.44307 -8.93300 -8.43702 -7.29281 -5.77482 -3.13928 2.74620 3.07598 3.38082 3.41597 3.46211 3.93581 4.30454 4.40026 4.50993 4.59053 4.73075 4.80639 4.85943 4.93049 5.05410 5.10129 5.18428 5.22348 5.26437 5.36328 5.42545 5.48303 5.49927 5.55754 5.63617 5.68060 5.71534 5.72873 5.89664 5.92637 5.92908 6.03951 6.05593 6.11963 6.31481 6.33164 6.46018 6.63260 6.80324 6.95181 7.36753 7.56024 7.97648 8.33012 8.41076 9.18721 9.91146 10.10191 11.40719 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030043 B = 0.003314 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.784531 B = 8445.741561 C = 8695.096261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.137 4.137 13 C -0.134 4.134 14 C 0.106 3.894 15 N -0.606 5.606 16 C 0.517 3.483 17 O -0.539 6.539 18 C -0.104 4.104 19 C -0.103 4.103 20 C -0.149 4.149 21 C 0.103 3.897 22 O -0.560 6.560 23 C -0.112 4.112 24 C -0.099 4.099 25 C 0.102 3.898 26 H 0.260 0.740 27 H 0.361 0.639 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.374 0.626 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.401 -15.815 1.910 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.063 3.937 11 H 0.077 0.923 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.017 4.017 15 N -0.339 5.339 16 C 0.304 3.696 17 O -0.415 6.415 18 C -0.126 4.126 19 C -0.141 4.141 20 C -0.187 4.187 21 C 0.044 3.956 22 O -0.366 6.366 23 C -0.150 4.150 24 C -0.136 4.136 25 C -0.021 4.021 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.221 0.779 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.450 -15.710 1.016 27.420 hybrid contribution 0.960 1.344 0.620 1.764 sum 23.410 -14.367 1.636 27.515 Atomic orbital electron populations 1.69698 1.05112 1.25874 1.57396 1.24666 0.95232 0.97223 1.01900 0.86552 0.79152 0.84940 0.77889 1.20962 1.21733 1.20334 1.19036 0.80312 0.94745 1.43194 0.89183 1.42674 1.04090 1.01735 1.90290 1.20449 0.90119 0.89623 0.93549 0.92346 1.22239 1.00593 0.94745 1.00183 1.21934 0.95364 0.99398 1.00586 1.21826 0.98057 0.98068 0.83730 1.48100 1.52262 1.25730 1.07852 1.20600 0.79909 0.85115 0.83930 1.90698 1.61641 1.64122 1.25050 1.21356 0.95728 0.95279 1.00197 1.21366 0.93047 0.97795 1.01898 1.22247 1.00388 0.97911 0.98177 1.21798 0.94954 0.91602 0.87211 1.86580 1.34629 1.68708 1.46640 1.21571 0.93245 0.97909 1.02231 1.21296 0.99949 0.96177 0.96224 1.21983 0.92174 0.84640 1.03270 0.93018 0.80616 0.92624 0.91103 0.91221 0.91664 0.90021 0.91532 0.89153 0.90599 0.91553 0.90793 0.91412 0.92877 0.77929 0.90669 0.90973 0.91640 0.89805 0.88858 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.29 27.73 -169.99 -4.71 17.57 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.24 -6.88 10.41 -15.06 -0.16 -7.04 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -17.73 4.93 -53.31 -0.26 -17.99 16 10 C 0.17 3.36 2.92 -67.81 -0.20 3.17 16 11 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 12 C -0.14 -2.26 5.47 -26.69 -0.15 -2.41 16 13 C -0.13 -1.63 6.08 -26.63 -0.16 -1.79 16 14 C 0.11 1.14 5.93 -3.73 -0.02 1.12 16 15 N -0.61 -8.64 2.97 -172.78 -0.51 -9.16 16 16 C 0.52 7.70 6.83 -10.99 -0.08 7.63 16 17 O -0.54 -10.35 15.47 5.55 0.09 -10.27 16 18 C -0.10 -1.10 1.70 -91.77 -0.16 -1.26 16 19 C -0.10 -0.90 5.00 -26.73 -0.13 -1.03 16 20 C -0.15 -0.92 5.64 -26.73 -0.15 -1.07 16 21 C 0.10 0.72 3.77 -26.73 -0.10 0.62 16 22 O -0.56 -4.73 11.97 -35.23 -0.42 -5.15 16 23 C -0.11 -0.90 5.66 -26.73 -0.15 -1.06 16 24 C -0.10 -1.09 4.55 -26.73 -0.12 -1.21 16 25 C 0.10 1.76 5.91 -3.71 -0.02 1.74 16 26 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 27 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 28 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.67 5.42 -51.93 -0.28 0.38 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.78 6.22 -51.93 -0.32 0.46 16 35 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 36 H 0.07 0.54 7.78 -51.93 -0.40 0.13 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.37 1.67 9.08 45.56 0.41 2.08 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.15 7.42 -51.93 -0.39 0.76 16 45 H 0.09 1.82 7.00 -51.93 -0.36 1.46 16 46 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -34.69 351.57 -8.50 -43.19 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.06 Total: 7.74 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.69 Total: -2.51 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.00 Total: -55.86 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.34 Total: -15.42 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.69 -8.50 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999049349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.200 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds