Wall clock time and date at job start Fri Apr 10 2020 17:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00141 * 2 1 4 4 H 1.48500 * 109.47383 * 270.00112 * 3 2 1 5 5 H 1.48502 * 109.47269 * 29.99909 * 3 2 1 6 6 H 1.48502 * 109.47282 * 149.99650 * 3 2 1 7 7 C 1.38819 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99863 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99612 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99689 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49746 * 35.07204 * 10 9 7 12 12 C 1.53031 * 109.49994 * 275.00501 * 10 9 7 13 13 C 1.53042 * 109.52740 * 178.65871 * 12 10 9 14 14 C 1.53160 * 109.32633 * 61.37413 * 13 12 10 15 15 N 1.46926 * 108.76895 * 305.35298 * 14 13 12 16 16 C 1.34774 * 120.63316 * 233.63217 * 15 14 13 17 17 O 1.21285 * 119.99857 * 175.58964 * 16 15 14 18 18 C 1.50696 * 119.99980 * 355.59621 * 16 15 14 19 19 C 1.53003 * 109.47069 * 277.88944 * 18 16 15 20 20 C 1.52998 * 109.47467 * 180.02562 * 19 18 16 21 21 C 1.53004 * 109.47033 * 59.99714 * 20 19 18 22 22 O 1.42900 * 109.46966 * 60.00335 * 21 20 19 23 23 C 1.52998 * 109.47222 * 300.00086 * 21 20 19 24 24 C 1.52998 * 109.47186 * 60.00008 * 23 21 20 25 25 C 1.46929 * 118.73533 * 53.60963 * 15 14 13 26 26 H 0.96995 * 120.00149 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00440 * 0.02562 * 9 7 2 28 28 H 1.09008 * 109.46407 * 298.67195 * 12 10 9 29 29 H 1.08999 * 109.46280 * 58.64220 * 12 10 9 30 30 H 1.09002 * 109.49620 * 181.31184 * 13 12 10 31 31 H 1.08992 * 109.49955 * 301.40623 * 13 12 10 32 32 H 1.09004 * 109.58676 * 185.56965 * 14 13 12 33 33 H 1.09002 * 109.59439 * 65.14134 * 14 13 12 34 34 H 1.09000 * 109.47304 * 37.88575 * 18 16 15 35 35 H 1.09000 * 109.46756 * 299.99967 * 19 18 16 36 36 H 1.08994 * 109.47208 * 59.99466 * 19 18 16 37 37 H 1.09006 * 109.46973 * 300.00121 * 20 19 18 38 38 H 1.09001 * 109.47394 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47021 * 180.02562 * 21 20 19 40 40 H 0.96695 * 114.00192 * 60.00452 * 22 21 20 41 41 H 1.09000 * 109.47042 * 300.00170 * 23 21 20 42 42 H 1.09005 * 109.47209 * 179.97438 * 23 21 20 43 43 H 1.09004 * 109.47548 * 179.97438 * 24 23 21 44 44 H 1.09006 * 109.46973 * 59.99700 * 24 23 21 45 45 H 1.09003 * 109.58244 * 186.60318 * 25 15 14 46 46 H 1.09007 * 109.58553 * 66.18194 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 1 3.5655 -3.2071 -0.5882 12 6 4.2591 -2.9747 1.4387 13 6 4.9949 -4.3166 1.4378 14 6 6.3951 -4.1265 0.8469 15 7 6.2684 -3.5073 -0.4794 16 6 6.8434 -4.0730 -1.5592 17 8 6.6653 -3.5969 -2.6604 18 6 7.7074 -5.2971 -1.3982 19 6 9.1155 -4.8752 -0.9736 20 6 9.9930 -6.1179 -0.8108 21 6 10.0652 -6.8692 -2.1418 22 8 10.6283 -6.0160 -3.1404 23 6 8.6572 -7.2911 -2.5663 24 6 7.7797 -6.0484 -2.7291 25 6 5.5025 -2.2599 -0.6064 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3622 -0.0004 28 1 4.8272 -2.2494 2.0214 29 1 3.2713 -3.1024 1.8815 30 1 5.0787 -4.6862 2.4598 31 1 4.4400 -5.0354 0.8350 32 1 6.8864 -5.0950 0.7526 33 1 6.9818 -3.4786 1.4981 34 1 7.2778 -5.9475 -0.6363 35 1 9.5451 -4.2248 -1.7356 36 1 9.0640 -4.3396 -0.0258 37 1 9.5635 -6.7687 -0.0491 38 1 10.9963 -5.8173 -0.5088 39 1 10.6900 -7.7547 -2.0257 40 1 11.5225 -5.7093 -2.9370 41 1 8.2278 -7.9419 -1.8045 42 1 8.7086 -7.8260 -3.5147 43 1 6.7766 -6.3490 -3.0320 44 1 8.2092 -5.3976 -3.4908 45 1 5.4049 -1.9966 -1.6597 46 1 6.0164 -1.4597 -0.0737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999049349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:58 Heat of formation + Delta-G solvation = -114.710563 kcal Electronic energy + Delta-G solvation = -25107.388619 eV Core-core repulsion = 21609.209567 eV Total energy + Delta-G solvation = -3498.179052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64004 -39.74028 -38.61702 -36.37310 -35.87350 -33.94252 -32.94598 -31.79952 -31.36664 -30.16035 -26.59518 -25.71507 -23.90129 -23.62744 -23.34553 -21.63451 -20.82720 -20.03326 -19.51219 -18.33428 -17.58550 -17.19023 -16.86177 -16.40627 -16.22365 -15.69725 -15.39200 -15.30239 -15.24602 -14.73463 -14.58725 -14.35094 -14.10084 -13.97674 -13.87663 -13.23929 -13.09542 -13.06357 -12.99746 -12.94504 -12.50324 -12.28875 -12.21125 -11.95343 -11.90649 -11.84830 -11.78552 -11.74160 -11.37864 -11.13723 -10.98532 -10.73300 -10.45846 -9.70750 -9.34153 -8.06181 -5.40924 1.34841 1.39648 1.45966 1.60073 1.94355 2.45391 3.24628 3.38475 3.53913 3.54754 3.77767 3.81562 3.94420 3.97450 4.08851 4.14832 4.18211 4.25039 4.28991 4.32017 4.42957 4.47650 4.60614 4.62164 4.72796 4.79923 4.82895 4.86545 4.97327 5.03400 5.10302 5.10660 5.14895 5.25222 5.28687 5.34059 5.38623 5.45952 5.51404 5.53600 5.72959 6.17169 6.44435 7.02212 7.02418 7.17559 7.76618 7.96854 9.15354 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030043 B = 0.003314 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.784531 B = 8445.741561 C = 8695.096261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.956 3.044 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.247 1.247 7 C -0.231 4.231 8 H 0.053 0.947 9 N -0.750 5.750 10 C 0.169 3.831 11 H 0.027 0.973 12 C -0.129 4.129 13 C -0.126 4.126 14 C 0.103 3.897 15 N -0.604 5.604 16 C 0.508 3.492 17 O -0.594 6.594 18 C -0.094 4.094 19 C -0.100 4.100 20 C -0.141 4.141 21 C 0.099 3.901 22 O -0.589 6.589 23 C -0.111 4.111 24 C -0.098 4.098 25 C 0.113 3.887 26 H 0.259 0.741 27 H 0.366 0.634 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.389 0.611 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.141 -17.166 4.482 32.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.783 3.217 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.172 1.172 7 C -0.362 4.362 8 H 0.071 0.929 9 N -0.393 5.393 10 C 0.061 3.939 11 H 0.045 0.955 12 C -0.169 4.169 13 C -0.165 4.165 14 C -0.018 4.018 15 N -0.337 5.337 16 C 0.298 3.702 17 O -0.475 6.475 18 C -0.115 4.115 19 C -0.138 4.138 20 C -0.178 4.178 21 C 0.040 3.960 22 O -0.397 6.397 23 C -0.148 4.148 24 C -0.136 4.136 25 C -0.012 4.012 26 H 0.068 0.932 27 H 0.199 0.801 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.238 0.762 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.263 -17.114 3.630 31.557 hybrid contribution -0.253 1.667 -0.247 1.705 sum 26.010 -15.447 3.383 30.439 Atomic orbital electron populations 1.69881 1.07161 1.26790 1.59550 1.25511 0.96141 1.01310 1.02463 0.85399 0.78850 0.79487 0.77980 1.20924 1.21883 1.17171 1.18945 0.82350 0.93356 1.41516 0.92895 1.42646 1.02567 1.03641 1.90485 1.20616 0.90589 0.87164 0.95574 0.95504 1.22058 1.00085 0.97771 0.97022 1.21908 0.95504 0.96213 1.02851 1.22176 0.97556 1.00310 0.81719 1.48221 1.51201 1.24729 1.09512 1.21547 0.79675 0.85888 0.83072 1.90675 1.63591 1.65871 1.27341 1.21413 0.96247 0.93175 1.00631 1.21373 0.91773 0.99036 1.01583 1.22233 1.00940 0.96615 0.98050 1.21940 0.94291 0.92427 0.87318 1.86556 1.36016 1.69250 1.47835 1.21617 0.93758 0.96436 1.02975 1.21234 0.99443 0.97161 0.95759 1.21616 0.91370 0.86923 1.01246 0.93238 0.80054 0.91421 0.93991 0.87602 0.92537 0.86210 0.89049 0.85963 0.93256 0.90016 0.88391 0.89509 0.90580 0.76192 0.88002 0.91710 0.93370 0.93519 0.92045 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.38 13.97 21.65 0.30 -64.08 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.96 46.48 27.73 68.60 1.90 48.38 16 4 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.25 -10.69 6.52 99.48 0.65 -10.04 16 7 C -0.23 -13.55 10.41 84.04 0.87 -12.67 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.40 16 9 N -0.75 -36.13 4.93 -322.58 -1.59 -37.72 16 10 C 0.17 6.68 2.92 45.06 0.13 6.81 16 11 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 12 C -0.13 -4.10 5.47 30.62 0.17 -3.93 16 13 C -0.13 -2.64 6.08 30.66 0.19 -2.45 16 14 C 0.10 1.75 5.93 86.35 0.51 2.26 16 15 N -0.60 -16.20 2.97 -818.95 -2.43 -18.63 16 16 C 0.51 14.88 6.83 87.66 0.60 15.48 16 17 O -0.59 -23.97 15.47 -3.05 -0.05 -24.01 16 18 C -0.09 -1.76 1.70 -11.54 -0.02 -1.78 16 19 C -0.10 -1.41 5.00 30.59 0.15 -1.26 16 20 C -0.14 -1.06 5.64 30.60 0.17 -0.88 16 21 C 0.10 1.06 3.77 30.60 0.12 1.18 16 22 O -0.59 -9.13 11.97 -148.98 -1.78 -10.92 16 23 C -0.11 -1.53 5.66 30.59 0.17 -1.36 16 24 C -0.10 -2.13 4.55 30.59 0.14 -1.99 16 25 C 0.11 3.85 5.91 86.36 0.51 4.36 16 26 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 27 H 0.37 16.79 5.66 -92.71 -0.52 16.27 16 28 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.12 1.19 5.42 -2.38 -0.01 1.17 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.12 1.52 6.22 -2.39 -0.01 1.50 16 35 H 0.05 0.98 7.68 -2.39 -0.02 0.96 16 36 H 0.08 0.92 7.78 -2.39 -0.02 0.90 16 37 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 38 H 0.09 0.39 8.14 -2.39 -0.02 0.38 16 39 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.39 2.82 9.08 -74.06 -0.67 2.14 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.05 1.16 8.14 -2.38 -0.02 1.15 16 44 H 0.05 1.35 7.42 -2.38 -0.02 1.33 16 45 H 0.06 2.49 7.00 -2.39 -0.02 2.48 16 46 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -82.53 351.57 0.25 -82.28 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.28 Total: 24.27 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 4.18 Total: 0.43 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -3.72 Total: -120.43 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.83 Total: -34.93 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.90 Total: 48.38 kcal Total: -82.53 0.25 -82.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999049349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.430 kcal (2) G-P(sol) polarization free energy of solvation -82.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds