Wall clock time and date at job start Fri Apr 10 2020 17:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.47053 * 125.40980 * 2 1 4 4 C 1.54110 * 103.86496 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.54734 * 118.73610 * 4 3 2 6 6 C 1.50700 * 110.54949 * 241.40626 * 4 3 2 7 7 O 1.21283 * 119.99803 * 99.99658 * 6 4 3 8 8 N 1.34777 * 119.99675 * 280.27534 * 6 4 3 9 9 C 1.46921 * 120.63392 * 359.43977 * 8 6 4 10 10 C 1.53624 * 108.54016 * 126.36873 * 9 8 6 11 11 C 1.53041 * 109.23819 * 54.86424 * 10 9 8 12 12 C 1.53037 * 109.53606 * 298.50541 * 11 10 9 13 13 H 1.09007 * 109.52683 * 301.39603 * 12 11 10 14 14 N 1.46506 * 109.49837 * 181.32052 * 12 11 10 15 15 C 1.36935 * 120.00029 * 85.16097 * 14 12 11 16 16 H 1.08004 * 119.99827 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00272 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99646 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47310 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47149 * 120.00145 * 19 17 15 22 22 H 1.48502 * 109.46840 * 240.00005 * 19 17 15 23 23 C 1.46924 * 120.62813 * 179.72946 * 8 6 4 24 24 N 1.47058 * 103.85830 * 0.02562 * 4 3 2 25 25 C 1.33946 * 109.17998 * 359.97438 * 24 4 3 26 26 O 1.21590 * 123.04114 * 180.02562 * 25 24 4 27 27 H 1.08996 * 109.47513 * 89.99992 * 1 2 3 28 28 H 1.09006 * 109.47336 * 210.00279 * 1 2 3 29 29 H 1.08999 * 109.47591 * 329.99937 * 1 2 3 30 30 H 1.09000 * 110.54865 * 61.40595 * 3 2 1 31 31 H 1.08998 * 110.67202 * 298.65228 * 3 2 1 32 32 H 1.09000 * 109.59076 * 246.20663 * 9 8 6 33 33 H 1.09000 * 109.58577 * 6.63206 * 9 8 6 34 34 H 1.08990 * 109.63928 * 294.86618 * 10 9 8 35 35 H 1.09006 * 109.45894 * 174.74079 * 10 9 8 36 36 H 1.09003 * 109.46117 * 178.48816 * 11 10 9 37 37 H 1.08995 * 109.46288 * 58.52798 * 11 10 9 38 38 H 0.96994 * 119.99741 * 265.15942 * 14 12 11 39 39 H 0.97000 * 119.99994 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.58932 * 353.36359 * 23 8 6 41 41 H 1.08997 * 109.58896 * 113.79383 * 23 8 6 42 42 H 0.97003 * 125.40418 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7504 0.6326 0.0007 5 1 4.2867 0.9483 -0.8942 6 6 4.4900 1.0668 1.2398 7 8 4.6014 0.3057 2.1775 8 7 5.0227 2.3030 1.3082 9 6 4.9012 3.2340 0.1782 10 6 4.2945 4.5487 0.6915 11 6 5.1420 5.0761 1.8516 12 6 5.1301 4.0611 2.9968 13 1 4.1035 3.8889 3.3204 14 7 5.9157 4.5807 4.1190 15 6 5.3332 5.4170 5.0335 16 1 4.2944 5.6932 4.9278 17 6 6.0776 5.9098 6.0964 18 7 7.3437 5.5736 6.2250 19 14 5.2827 7.0501 7.3443 20 1 3.8612 7.2723 6.9768 21 1 5.3553 6.4346 8.6938 22 1 6.0000 8.3503 7.3541 23 6 5.7414 2.7428 2.5118 24 7 3.5537 -0.8248 0.0003 25 6 2.2411 -1.0917 0.0002 26 8 1.7945 -2.2226 0.0003 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 2.1405 1.7934 0.8962 31 1 2.1414 1.7955 -0.8949 32 1 5.8870 3.4244 -0.2461 33 1 4.2508 2.8024 -0.5826 34 1 3.2757 4.3721 1.0361 35 1 4.2839 5.2828 -0.1143 36 1 4.7302 6.0229 2.2012 37 1 6.1666 5.2292 1.5126 38 1 6.8485 4.3323 4.2141 39 1 7.8640 5.9182 6.9675 40 1 5.6455 1.9870 3.2914 41 1 6.7943 2.8939 2.2739 42 1 4.2621 -1.4875 0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999892303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:11 Heat of formation + Delta-G solvation = -24.872178 kcal Electronic energy + Delta-G solvation = -24684.736976 eV Core-core repulsion = 21086.913265 eV Total energy + Delta-G solvation = -3597.823711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62675 -39.77103 -37.49225 -36.36963 -34.62058 -34.32104 -32.35846 -31.38334 -29.93892 -28.34783 -27.37681 -25.46820 -24.20072 -23.31760 -22.19014 -20.82511 -20.37867 -19.13568 -18.02770 -17.66577 -17.26360 -16.47349 -16.16957 -15.34627 -15.31852 -14.76475 -14.47910 -14.25918 -14.18204 -14.10192 -13.69912 -13.59126 -13.36804 -13.13996 -12.98629 -12.67038 -12.56847 -12.33101 -12.20208 -11.20144 -11.07222 -10.96866 -10.76256 -10.52097 -10.46002 -10.45100 -10.25609 -10.09044 -9.77339 -9.39491 -8.98441 -8.85301 -8.57859 -7.05782 -5.83700 -3.13764 2.20391 2.46861 2.70710 3.06027 3.39265 3.44989 3.47234 3.61011 3.96086 4.15032 4.44229 4.52607 4.64287 4.78610 4.95145 4.97915 5.07571 5.16926 5.26843 5.38858 5.43333 5.45985 5.53842 5.63967 5.66603 5.69308 5.90487 6.04212 6.11371 6.27894 6.37249 6.43624 6.54738 6.76901 6.85807 6.94666 7.19711 7.35213 7.63799 8.04526 8.34003 8.37999 9.45507 9.99915 10.34576 11.38732 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.023358 B = 0.003419 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.470434 B = 8186.748726 C = 8305.664130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.637 5.637 3 C 0.106 3.894 4 C 0.104 3.896 5 H 0.116 0.884 6 C 0.500 3.500 7 O -0.522 6.522 8 N -0.600 5.600 9 C 0.103 3.897 10 C -0.133 4.133 11 C -0.138 4.138 12 C 0.169 3.831 13 H 0.050 0.950 14 N -0.721 5.721 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.105 3.895 24 N -0.715 5.715 25 C 0.705 3.295 26 O -0.584 6.584 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 -4.914 -19.084 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.377 5.377 3 C -0.019 4.019 4 C -0.006 4.006 5 H 0.134 0.866 6 C 0.284 3.716 7 O -0.397 6.397 8 N -0.334 5.334 9 C -0.019 4.019 10 C -0.172 4.172 11 C -0.179 4.179 12 C 0.058 3.942 13 H 0.068 0.932 14 N -0.362 5.362 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.017 4.017 24 N -0.376 5.376 25 C 0.406 3.594 26 O -0.461 6.461 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.218 0.782 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.203 -5.801 -18.435 21.406 hybrid contribution 0.445 0.682 0.766 1.118 sum -8.758 -5.119 -17.670 20.375 Atomic orbital electron populations 1.21404 0.75277 1.03492 1.01841 1.47002 1.06480 1.05536 1.78651 1.22312 0.86228 0.89107 1.04209 1.21872 0.97206 0.83294 0.98249 0.86645 1.20647 0.79828 0.82120 0.88957 1.90767 1.58483 1.52447 1.37982 1.48141 1.54875 1.12873 1.17493 1.21962 1.01584 0.90503 0.87898 1.22014 1.00092 0.95721 0.99347 1.22299 0.99255 1.00984 0.95368 1.20470 0.95659 0.89822 0.88262 0.93223 1.42314 1.11324 1.56319 1.26258 1.19235 0.95129 1.20122 1.02691 0.91085 1.24754 0.95950 1.00999 0.99016 1.69667 1.06972 1.48579 1.32630 0.86121 0.78280 0.80304 0.81480 1.20537 1.21787 1.21822 1.22069 0.95220 0.98267 0.86154 1.44843 1.06969 1.06196 1.79621 1.15794 0.81661 0.84627 0.77361 1.90960 1.75850 1.20904 1.58426 0.92529 0.90339 0.90728 0.89324 0.88724 0.90813 0.90474 0.91736 0.91108 0.91432 0.92364 0.78171 0.93447 0.88863 0.91397 0.72371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.96 11.03 59.84 0.66 1.62 16 2 N -0.64 -6.74 3.36 -186.74 -0.63 -7.37 16 3 C 0.11 0.84 6.59 -3.16 -0.02 0.82 16 4 C 0.10 0.96 3.15 -68.20 -0.22 0.74 16 5 H 0.12 0.65 7.01 -51.93 -0.36 0.29 16 6 C 0.50 6.54 6.82 -10.98 -0.07 6.47 16 7 O -0.52 -9.38 15.97 5.55 0.09 -9.29 16 8 N -0.60 -7.37 2.97 -172.51 -0.51 -7.88 16 9 C 0.10 0.87 6.22 -3.49 -0.02 0.85 16 10 C -0.13 -1.32 6.10 -26.39 -0.16 -1.48 16 11 C -0.14 -2.08 5.46 -26.69 -0.15 -2.23 16 12 C 0.17 3.09 2.92 -67.81 -0.20 2.89 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 N -0.72 -17.19 5.12 -53.30 -0.27 -17.46 16 15 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 16 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 19 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C 0.11 1.70 5.90 -3.71 -0.02 1.68 16 24 N -0.72 -8.21 5.60 -59.32 -0.33 -8.54 16 25 C 0.71 9.72 8.60 -88.40 -0.76 8.96 16 26 O -0.58 -10.26 17.53 5.29 0.09 -10.17 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.77 7.72 -51.93 -0.40 0.36 16 31 H 0.09 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.39 5.26 -51.93 -0.27 0.12 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.09 1.76 7.01 -51.93 -0.36 1.40 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.43 4.60 8.96 -40.82 -0.37 4.24 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -35.99 341.86 -8.18 -44.17 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.27 Total: 7.92 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -1.21 Total: 13.33 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.02 Total: -68.00 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.18 Total: -19.46 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.99 -8.18 -44.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999892303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.296 kcal (2) G-P(sol) polarization free energy of solvation -35.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds