Wall clock time and date at job start Fri Apr 10 2020 17:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47057 * 125.40952 * 2 1 4 4 C 1.54105 * 103.99235 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.55034 * 118.66113 * 4 3 2 6 6 C 1.50699 * 110.54950 * 241.47711 * 4 3 2 7 7 O 1.21291 * 119.99765 * 99.99894 * 6 4 3 8 8 N 1.34771 * 120.00230 * 280.00136 * 6 4 3 9 9 C 1.46925 * 120.62798 * 359.71584 * 8 6 4 10 10 C 1.52768 * 109.01022 * 233.58653 * 9 8 6 11 11 C 1.53039 * 109.38009 * 305.58898 * 10 9 8 12 12 C 1.53040 * 109.53793 * 61.24370 * 11 10 9 13 13 H 1.08996 * 109.50307 * 58.58046 * 12 11 10 14 14 N 1.46504 * 109.52370 * 178.66493 * 12 11 10 15 15 C 1.36932 * 119.99991 * 274.85039 * 14 12 11 16 16 H 1.08005 * 120.00008 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00214 * 180.02562 * 15 14 12 18 18 N 1.31616 * 119.99454 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00032 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47372 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47243 * 119.99871 * 19 17 15 22 22 H 1.48507 * 109.46808 * 239.99556 * 19 17 15 23 23 C 1.46924 * 120.63189 * 180.02562 * 8 6 4 24 24 N 1.47394 * 103.70056 * 0.10684 * 4 3 2 25 25 C 1.33947 * 109.21036 * 359.88525 * 24 4 3 26 26 O 1.21589 * 123.04015 * 180.02562 * 25 24 4 27 27 H 1.08996 * 109.46971 * 90.00300 * 1 2 3 28 28 H 1.09000 * 109.47188 * 210.00385 * 1 2 3 29 29 H 1.09001 * 109.47302 * 329.99708 * 1 2 3 30 30 H 1.09002 * 110.54831 * 298.59477 * 3 2 1 31 31 H 1.08997 * 110.54826 * 61.25951 * 3 2 1 32 32 H 1.08996 * 109.59075 * 353.42054 * 9 8 6 33 33 H 1.08998 * 109.58670 * 113.84662 * 9 8 6 34 34 H 1.08995 * 109.56687 * 185.55124 * 10 9 8 35 35 H 1.08998 * 109.35532 * 65.49869 * 10 9 8 36 36 H 1.08992 * 109.46553 * 301.21751 * 11 10 9 37 37 H 1.09003 * 109.45592 * 181.25393 * 11 10 9 38 38 H 0.96997 * 119.99801 * 94.84939 * 14 12 11 39 39 H 0.97012 * 119.99607 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.58439 * 246.15125 * 23 8 6 41 41 H 1.09000 * 109.58946 * 6.57584 * 23 8 6 42 42 H 0.97000 * 125.37712 * 179.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1986 0.0000 4 6 3.7517 0.6358 0.0007 5 1 4.2869 0.9516 -0.8948 6 6 4.4897 1.0703 1.2407 7 8 4.6025 0.3082 2.1775 8 7 5.0244 2.3055 1.3086 9 6 4.9014 3.2376 0.1796 10 6 6.2922 3.7383 -0.2062 11 6 6.9785 4.3309 1.0267 12 6 7.1329 3.2478 2.0967 13 1 7.7162 2.4195 1.6946 14 7 7.8185 3.8072 3.2643 15 6 9.1867 3.8480 3.3004 16 1 9.7605 3.4682 2.4679 17 6 9.8364 4.3776 4.4070 18 7 9.1372 4.8409 5.4212 19 14 11.7029 4.4339 4.4558 20 1 12.2486 3.8560 3.2015 21 1 12.1523 5.8430 4.5886 22 1 12.1916 3.6470 5.6166 23 6 5.7472 2.7433 2.5105 24 7 3.5538 -0.8247 -0.0017 25 6 2.2412 -1.0917 -0.0009 26 8 1.7946 -2.2226 -0.0020 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 2.1406 1.7934 -0.8962 31 1 2.1387 1.7947 0.8949 32 1 4.4506 2.7249 -0.6701 33 1 4.2791 4.0839 0.4705 34 1 6.2037 4.5042 -0.9767 35 1 6.8834 2.9054 -0.5866 36 1 6.3744 5.1478 1.4213 37 1 7.9623 4.7088 0.7481 38 1 7.3032 4.1486 4.0118 39 1 9.5912 5.2113 6.1944 40 1 5.1954 3.5484 2.9958 41 1 5.8543 1.9045 3.1984 42 1 4.2621 -1.4874 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999892305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:17 Heat of formation + Delta-G solvation = -24.529299 kcal Electronic energy + Delta-G solvation = -24527.175787 eV Core-core repulsion = 20929.366945 eV Total energy + Delta-G solvation = -3597.808842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61826 -39.78866 -37.51087 -36.37555 -34.62651 -34.32627 -32.37467 -31.40491 -29.94818 -28.36481 -27.39774 -25.48106 -24.20056 -23.35443 -22.17089 -20.80237 -20.34573 -19.23000 -18.02099 -17.59835 -17.27456 -16.52561 -16.22953 -15.41920 -15.27685 -14.74434 -14.44777 -14.27034 -14.25485 -13.99880 -13.74026 -13.60882 -13.46212 -13.05183 -12.99924 -12.73176 -12.60069 -12.36134 -12.21557 -11.19090 -11.05620 -10.96761 -10.75321 -10.51495 -10.46503 -10.45359 -10.26100 -10.08895 -9.77208 -9.40730 -8.98233 -8.87162 -8.58530 -7.05633 -5.83576 -3.13567 2.18032 2.48502 2.67877 3.05129 3.39421 3.45301 3.47409 3.58846 3.94014 4.14147 4.41347 4.52924 4.61429 4.79676 4.91254 4.99255 5.03457 5.17370 5.23688 5.37080 5.41377 5.45241 5.53209 5.62792 5.66130 5.69597 5.91315 6.04380 6.11535 6.28653 6.34595 6.43843 6.54731 6.77463 6.85686 6.94935 7.18156 7.34857 7.64159 8.04315 8.34148 8.36789 9.45673 10.00032 10.34758 11.38835 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.031152 B = 0.003168 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.601724 B = 8835.459660 C = 9134.502726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.638 5.638 3 C 0.107 3.893 4 C 0.104 3.896 5 H 0.118 0.882 6 C 0.501 3.499 7 O -0.522 6.522 8 N -0.599 5.599 9 C 0.104 3.896 10 C -0.135 4.135 11 C -0.138 4.138 12 C 0.168 3.832 13 H 0.050 0.950 14 N -0.721 5.721 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.106 3.894 24 N -0.715 5.715 25 C 0.705 3.295 26 O -0.584 6.584 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.673 -2.077 -15.966 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.378 5.378 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.135 0.865 6 C 0.285 3.715 7 O -0.397 6.397 8 N -0.333 5.333 9 C -0.019 4.019 10 C -0.174 4.174 11 C -0.179 4.179 12 C 0.057 3.943 13 H 0.068 0.932 14 N -0.362 5.362 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.017 4.017 24 N -0.376 5.376 25 C 0.406 3.594 26 O -0.461 6.461 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -15.843 -3.089 -15.454 22.347 hybrid contribution 1.387 0.296 0.333 1.457 sum -14.456 -2.793 -15.121 21.105 Atomic orbital electron populations 1.21394 0.75319 1.03396 1.01852 1.47004 1.06442 1.05554 1.78777 1.22284 0.86334 0.89103 1.04044 1.21951 0.97100 0.83254 0.98376 0.86462 1.20606 0.80017 0.81948 0.88921 1.90770 1.58604 1.52174 1.38138 1.48141 1.54154 1.13250 1.17770 1.21793 0.98631 0.93228 0.88259 1.21872 0.95347 1.00928 0.99206 1.22294 1.00665 0.99878 0.95027 1.20465 0.90564 0.94105 0.89125 0.93196 1.42311 1.03863 1.72807 1.17217 1.19236 0.82411 1.33924 1.01571 0.91087 1.24756 0.97949 1.01458 0.96601 1.69671 1.34089 1.46476 1.07620 0.86117 0.85460 0.77216 0.77370 1.20534 1.21823 1.21794 1.22062 0.92953 1.00647 0.86038 1.44935 1.06946 1.06233 1.79516 1.15792 0.81669 0.84613 0.77369 1.90962 1.75846 1.20895 1.58414 0.92532 0.90351 0.90820 0.88779 0.89497 0.90422 0.90810 0.91056 0.91774 0.92361 0.91448 0.78173 0.93454 0.91396 0.88857 0.72297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.89 11.03 59.85 0.66 1.55 16 2 N -0.64 -6.42 3.36 -186.74 -0.63 -7.04 16 3 C 0.11 0.78 6.88 -3.16 -0.02 0.76 16 4 C 0.10 0.94 3.17 -68.02 -0.22 0.73 16 5 H 0.12 0.70 6.75 -51.93 -0.35 0.35 16 6 C 0.50 6.54 6.83 -10.99 -0.08 6.46 16 7 O -0.52 -9.37 15.98 5.55 0.09 -9.28 16 8 N -0.60 -7.35 2.98 -173.05 -0.52 -7.87 16 9 C 0.10 0.87 6.16 -3.93 -0.02 0.85 16 10 C -0.13 -1.38 6.07 -26.83 -0.16 -1.55 16 11 C -0.14 -2.10 5.47 -26.69 -0.15 -2.24 16 12 C 0.17 3.10 2.92 -67.83 -0.20 2.90 16 13 H 0.05 0.99 8.08 -51.93 -0.42 0.58 16 14 N -0.72 -17.23 5.12 -53.32 -0.27 -17.50 16 15 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 16 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 19 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C 0.11 1.70 5.90 -3.73 -0.02 1.68 16 24 N -0.71 -8.28 5.62 -59.11 -0.33 -8.61 16 25 C 0.71 9.57 8.60 -88.40 -0.76 8.81 16 26 O -0.58 -10.16 17.53 5.29 0.09 -10.07 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.64 7.73 -51.93 -0.40 0.24 16 32 H 0.08 0.39 5.40 -51.93 -0.28 0.11 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 39 H 0.26 7.32 8.31 -40.81 -0.34 6.98 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.76 7.01 -51.93 -0.36 1.40 16 42 H 0.43 4.79 8.96 -40.82 -0.37 4.42 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -36.09 342.05 -8.18 -44.27 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.26 Total: 7.84 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -1.21 Total: 12.93 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -1.02 Total: -67.80 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.18 Total: -19.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.09 -8.18 -44.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999892305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.744 kcal (2) G-P(sol) polarization free energy of solvation -36.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds