Wall clock time and date at job start Fri Apr 10 2020 17:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47388 * 125.37935 * 2 1 4 4 C 1.54104 * 103.70292 * 179.97438 * 3 2 1 5 5 H 1.09008 * 110.55158 * 118.77642 * 4 3 2 6 6 C 1.50706 * 110.54538 * 241.44080 * 4 3 2 7 7 O 1.21277 * 119.99794 * 98.00349 * 6 4 3 8 8 N 1.34776 * 119.99775 * 277.99809 * 6 4 3 9 9 C 1.46502 * 119.99659 * 180.02562 * 8 6 4 10 10 C 1.53036 * 109.46221 * 275.02494 * 9 8 6 11 11 C 1.53193 * 109.31272 * 178.60207 * 10 9 8 12 12 N 1.46916 * 108.76472 * 54.65600 * 11 10 9 13 13 C 1.36945 * 120.62988 * 126.36054 * 12 11 10 14 14 H 1.08006 * 119.99740 * 331.85370 * 13 12 11 15 15 C 1.38806 * 120.00098 * 151.84659 * 13 12 11 16 16 N 1.31621 * 120.00109 * 343.07295 * 15 13 12 17 17 Si 1.86802 * 120.00094 * 163.07139 * 15 13 12 18 18 H 1.48501 * 109.46975 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47316 * 119.99903 * 17 15 13 20 20 H 1.48498 * 109.46942 * 240.00351 * 17 15 13 21 21 C 1.46923 * 118.74293 * 306.38729 * 12 11 10 22 22 C 1.53047 * 109.45718 * 154.97496 * 9 8 6 23 23 N 1.47050 * 103.99066 * 0.10500 * 4 3 2 24 24 C 1.33943 * 109.17911 * 359.93263 * 23 4 3 25 25 O 1.21593 * 123.03956 * 180.02562 * 24 23 4 26 26 H 1.08997 * 109.47027 * 179.88638 * 1 2 3 27 27 H 1.08995 * 109.47450 * 299.88576 * 1 2 3 28 28 H 1.09004 * 109.47197 * 59.89050 * 1 2 3 29 29 H 1.08992 * 110.59616 * 61.43310 * 3 2 1 30 30 H 1.09008 * 110.65473 * 298.51417 * 3 2 1 31 31 H 0.96996 * 120.00451 * 0.27342 * 8 6 4 32 32 H 1.08996 * 109.46242 * 35.00463 * 9 8 6 33 33 H 1.08997 * 109.49834 * 298.57015 * 10 9 8 34 34 H 1.09006 * 109.49132 * 58.66753 * 10 9 8 35 35 H 1.09002 * 109.59670 * 294.86920 * 11 10 9 36 36 H 1.08997 * 109.69966 * 174.51075 * 11 10 9 37 37 H 0.97004 * 119.99730 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.58231 * 293.81739 * 21 12 11 39 39 H 1.09004 * 109.58737 * 173.39615 * 21 12 11 40 40 H 1.09001 * 109.49398 * 301.33448 * 22 9 8 41 41 H 1.08996 * 109.49571 * 61.40146 * 22 9 8 42 42 H 0.97001 * 125.40547 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3183 1.2017 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2878 0.9475 -0.8939 6 6 4.4906 1.0644 1.2403 7 8 4.5690 0.3160 2.1914 8 7 5.0655 2.2823 1.2919 9 6 5.7856 2.7019 2.4968 10 6 4.7945 3.2880 3.5049 11 6 5.5459 3.6935 4.7769 12 7 6.6408 4.6016 4.4098 13 6 6.7652 5.8245 5.0136 14 1 5.8900 6.3304 5.3939 15 6 8.0159 6.4137 5.1368 16 7 9.1033 5.6867 4.9896 17 14 8.1560 8.2383 5.5116 18 1 6.7970 8.8253 5.6289 19 1 8.8889 8.4265 6.7893 20 1 8.8933 8.9139 4.4138 21 6 7.5996 4.1732 3.3823 22 6 6.8252 3.7621 2.1261 23 7 3.5537 -0.8248 -0.0016 24 6 2.2411 -1.0917 -0.0019 25 8 1.7946 -2.2226 -0.0032 26 1 -0.3633 -1.0276 -0.0020 27 1 -0.3634 0.5120 0.8909 28 1 -0.3634 0.5155 -0.8890 29 1 2.1425 1.7968 0.8961 30 1 2.1439 1.7971 -0.8963 31 1 4.9994 2.8824 0.5327 32 1 6.2867 1.8408 2.9387 33 1 4.3112 4.1642 3.0727 34 1 4.0406 2.5401 3.7507 35 1 5.9539 2.8053 5.2593 36 1 4.8645 4.2000 5.4604 37 1 9.9773 6.0986 5.0754 38 1 8.1752 3.3241 3.7510 39 1 8.2721 4.9972 3.1437 40 1 7.5169 3.3517 1.3904 41 1 6.3226 4.6335 1.7065 42 1 4.2621 -1.4875 -0.0022 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003437037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:19 Heat of formation + Delta-G solvation = -22.958335 kcal Electronic energy + Delta-G solvation = -24368.675361 eV Core-core repulsion = 20770.934641 eV Total energy + Delta-G solvation = -3597.740720 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55094 -39.54280 -37.48613 -36.34822 -34.61475 -34.29177 -32.29633 -30.46751 -29.88316 -29.08759 -27.44556 -25.22725 -23.99091 -22.38523 -21.95694 -20.79669 -20.46148 -19.46462 -17.99583 -17.77354 -16.89139 -16.51652 -16.01998 -15.52928 -15.04761 -14.84868 -14.51564 -14.28698 -14.06677 -13.75795 -13.70842 -13.60039 -13.08318 -13.02601 -12.66652 -12.58511 -12.44746 -12.24761 -11.54495 -11.20155 -10.95505 -10.78802 -10.56764 -10.50141 -10.37222 -10.25160 -10.09812 -9.85371 -9.67784 -9.39770 -8.88724 -8.86902 -8.52442 -6.74715 -5.85210 -3.27822 2.18310 2.50669 2.77200 3.12690 3.32845 3.41208 3.43157 3.64634 3.96018 4.40526 4.44519 4.45128 4.73814 4.95712 5.07452 5.20951 5.25735 5.34260 5.41580 5.42085 5.49228 5.59189 5.76682 5.98258 6.14685 6.22445 6.34690 6.43543 6.45324 6.49227 6.71516 6.77896 6.83401 6.91543 7.17099 7.24152 7.46021 7.57693 7.74651 8.14257 8.35273 8.38780 9.14969 9.77932 10.34615 11.23724 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038251 B = 0.002968 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.826818 B = 9432.697663 C = 9662.365152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.638 5.638 3 C 0.107 3.893 4 C 0.103 3.897 5 H 0.115 0.885 6 C 0.497 3.503 7 O -0.522 6.522 8 N -0.718 5.718 9 C 0.150 3.850 10 C -0.139 4.139 11 C 0.147 3.853 12 N -0.593 5.593 13 C -0.253 4.253 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.174 3.826 22 C -0.146 4.146 23 N -0.714 5.714 24 C 0.706 3.294 25 O -0.585 6.585 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.397 0.603 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.056 0.944 37 H 0.254 0.746 38 H 0.021 0.979 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 -5.607 -14.386 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.377 5.377 3 C -0.017 4.017 4 C -0.008 4.008 5 H 0.133 0.867 6 C 0.280 3.720 7 O -0.397 6.397 8 N -0.368 5.368 9 C 0.047 3.953 10 C -0.179 4.179 11 C 0.020 3.980 12 N -0.316 5.316 13 C -0.383 4.383 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.732 3.268 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.047 3.953 22 C -0.186 4.186 23 N -0.376 5.376 24 C 0.406 3.594 25 O -0.463 6.463 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.231 0.769 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -12.265 -6.669 -13.646 19.522 hybrid contribution 0.580 1.154 -0.137 1.299 sum -11.685 -5.515 -13.783 18.893 Atomic orbital electron populations 1.21427 0.75376 1.04075 1.01435 1.47061 1.06463 1.05573 1.78642 1.22333 0.86202 0.89036 1.04165 1.21884 0.97238 0.83385 0.98313 0.86712 1.20666 0.79911 0.82455 0.88986 1.90767 1.58830 1.52967 1.37113 1.46361 1.54914 1.16108 1.19461 1.21108 0.92500 0.97743 0.83944 1.22373 0.97936 0.99550 0.98031 1.20870 0.90757 0.93421 0.92970 1.44107 1.29441 1.15952 1.42057 1.19233 0.92099 0.93346 1.33576 0.91565 1.25064 0.95700 0.98565 1.00322 1.70035 0.97031 1.33929 1.53712 0.86223 0.77657 0.85321 0.77567 1.20245 1.21697 1.21552 1.20749 0.90737 0.99187 0.84593 1.22540 0.97555 0.97046 1.01449 1.44815 1.06947 1.06215 1.79581 1.15795 0.81710 0.84624 0.77281 1.90959 1.75839 1.20905 1.58577 0.89503 0.91959 0.91979 0.89373 0.88708 0.76895 0.89950 0.92199 0.92834 0.96201 0.92499 0.93612 0.96105 0.88959 0.92664 0.92051 0.72349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.89 11.22 59.84 0.67 1.56 16 2 N -0.64 -6.44 3.36 -186.47 -0.63 -7.07 16 3 C 0.11 0.78 7.34 -2.98 -0.02 0.75 16 4 C 0.10 0.87 4.16 -68.20 -0.28 0.58 16 5 H 0.12 0.56 8.14 -51.92 -0.42 0.14 16 6 C 0.50 6.05 6.91 -10.98 -0.08 5.97 16 7 O -0.52 -8.97 16.24 5.56 0.09 -8.88 16 8 N -0.72 -8.11 5.08 -53.76 -0.27 -8.38 16 9 C 0.15 2.35 2.42 -67.89 -0.16 2.18 16 10 C -0.14 -2.34 5.65 -26.61 -0.15 -2.49 16 11 C 0.15 3.03 6.52 -3.72 -0.02 3.01 16 12 N -0.59 -14.25 2.99 -172.33 -0.52 -14.76 16 13 C -0.25 -6.71 9.58 -15.06 -0.14 -6.85 16 14 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 15 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 16 N -0.90 -25.44 11.20 55.49 0.62 -24.82 16 17 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 22 C -0.15 -2.43 5.55 -26.61 -0.15 -2.57 16 23 N -0.71 -7.89 5.62 -59.32 -0.33 -8.22 16 24 C 0.71 9.43 8.60 -88.40 -0.76 8.67 16 25 O -0.58 -10.07 17.29 5.28 0.09 -9.98 16 26 H 0.09 0.76 7.52 -51.93 -0.39 0.37 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.67 7.72 -51.93 -0.40 0.27 16 30 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.40 3.14 8.61 -40.82 -0.35 2.79 16 32 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.43 4.48 8.96 -40.82 -0.37 4.11 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -35.27 342.85 -8.42 -43.69 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.41 Total: 2.63 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: -1.21 Total: 14.65 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -1.13 Total: -63.25 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.27 -8.42 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003437037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.730 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds