Wall clock time and date at job start Fri Apr 10 2020 17:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47388 * 125.37935 * 2 1 4 4 C 1.54104 * 103.70292 * 179.97438 * 3 2 1 5 5 H 1.09008 * 110.55158 * 118.77642 * 4 3 2 6 6 C 1.50706 * 110.54538 * 241.44080 * 4 3 2 7 7 O 1.21277 * 119.99794 * 98.00349 * 6 4 3 8 8 N 1.34776 * 119.99775 * 277.99809 * 6 4 3 9 9 C 1.46502 * 119.99659 * 180.02562 * 8 6 4 10 10 C 1.53036 * 109.46221 * 275.02494 * 9 8 6 11 11 C 1.53193 * 109.31272 * 178.60207 * 10 9 8 12 12 N 1.46916 * 108.76472 * 54.65600 * 11 10 9 13 13 C 1.36945 * 120.62988 * 126.36054 * 12 11 10 14 14 H 1.08006 * 119.99740 * 331.85370 * 13 12 11 15 15 C 1.38806 * 120.00098 * 151.84659 * 13 12 11 16 16 N 1.31621 * 120.00109 * 343.07295 * 15 13 12 17 17 Si 1.86802 * 120.00094 * 163.07139 * 15 13 12 18 18 H 1.48501 * 109.46975 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47316 * 119.99903 * 17 15 13 20 20 H 1.48498 * 109.46942 * 240.00351 * 17 15 13 21 21 C 1.46923 * 118.74293 * 306.38729 * 12 11 10 22 22 C 1.53047 * 109.45718 * 154.97496 * 9 8 6 23 23 N 1.47050 * 103.99066 * 0.10500 * 4 3 2 24 24 C 1.33943 * 109.17911 * 359.93263 * 23 4 3 25 25 O 1.21593 * 123.03956 * 180.02562 * 24 23 4 26 26 H 1.08997 * 109.47027 * 179.88638 * 1 2 3 27 27 H 1.08995 * 109.47450 * 299.88576 * 1 2 3 28 28 H 1.09004 * 109.47197 * 59.89050 * 1 2 3 29 29 H 1.08992 * 110.59616 * 61.43310 * 3 2 1 30 30 H 1.09008 * 110.65473 * 298.51417 * 3 2 1 31 31 H 0.96996 * 120.00451 * 0.27342 * 8 6 4 32 32 H 1.08996 * 109.46242 * 35.00463 * 9 8 6 33 33 H 1.08997 * 109.49834 * 298.57015 * 10 9 8 34 34 H 1.09006 * 109.49132 * 58.66753 * 10 9 8 35 35 H 1.09002 * 109.59670 * 294.86920 * 11 10 9 36 36 H 1.08997 * 109.69966 * 174.51075 * 11 10 9 37 37 H 0.97004 * 119.99730 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.58231 * 293.81739 * 21 12 11 39 39 H 1.09004 * 109.58737 * 173.39615 * 21 12 11 40 40 H 1.09001 * 109.49398 * 301.33448 * 22 9 8 41 41 H 1.08996 * 109.49571 * 61.40146 * 22 9 8 42 42 H 0.97001 * 125.40547 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3183 1.2017 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2878 0.9475 -0.8939 6 6 4.4906 1.0644 1.2403 7 8 4.5690 0.3160 2.1914 8 7 5.0655 2.2823 1.2919 9 6 5.7856 2.7019 2.4968 10 6 4.7945 3.2880 3.5049 11 6 5.5459 3.6935 4.7769 12 7 6.6408 4.6016 4.4098 13 6 6.7652 5.8245 5.0136 14 1 5.8900 6.3304 5.3939 15 6 8.0159 6.4137 5.1368 16 7 9.1033 5.6867 4.9896 17 14 8.1560 8.2383 5.5116 18 1 6.7970 8.8253 5.6289 19 1 8.8889 8.4265 6.7893 20 1 8.8933 8.9139 4.4138 21 6 7.5996 4.1732 3.3823 22 6 6.8252 3.7621 2.1261 23 7 3.5537 -0.8248 -0.0016 24 6 2.2411 -1.0917 -0.0019 25 8 1.7946 -2.2226 -0.0032 26 1 -0.3633 -1.0276 -0.0020 27 1 -0.3634 0.5120 0.8909 28 1 -0.3634 0.5155 -0.8890 29 1 2.1425 1.7968 0.8961 30 1 2.1439 1.7971 -0.8963 31 1 4.9994 2.8824 0.5327 32 1 6.2867 1.8408 2.9387 33 1 4.3112 4.1642 3.0727 34 1 4.0406 2.5401 3.7507 35 1 5.9539 2.8053 5.2593 36 1 4.8645 4.2000 5.4604 37 1 9.9773 6.0986 5.0754 38 1 8.1752 3.3241 3.7510 39 1 8.2721 4.9972 3.1437 40 1 7.5169 3.3517 1.3904 41 1 6.3226 4.6335 1.7065 42 1 4.2621 -1.4875 -0.0022 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003437037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:18 Heat of formation + Delta-G solvation = -51.047787 kcal Electronic energy + Delta-G solvation = -24369.893412 eV Core-core repulsion = 20770.934641 eV Total energy + Delta-G solvation = -3598.958770 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39850 -40.65833 -38.95722 -37.37141 -36.03961 -35.07117 -33.97206 -31.94213 -31.39359 -30.14478 -28.19632 -26.88060 -24.97744 -23.93662 -23.43552 -21.61750 -21.51491 -20.98549 -19.10757 -18.72309 -18.37870 -17.52839 -17.08722 -16.78955 -16.44716 -16.02543 -15.63578 -15.35709 -15.28489 -15.17345 -14.88710 -14.65096 -14.50264 -14.35075 -14.06600 -13.47794 -13.22976 -13.17329 -13.01563 -12.92753 -12.62152 -12.51576 -12.20463 -11.98593 -11.86751 -11.57300 -11.54114 -11.39565 -11.21549 -10.56218 -10.39648 -10.02781 -9.58419 -8.70338 -7.87538 -5.33480 1.35811 1.48515 1.50982 1.61307 1.63163 1.85630 2.18961 2.52608 2.92044 3.28482 3.29850 3.55645 3.68648 3.89875 3.93757 4.07344 4.14087 4.34533 4.48020 4.51062 4.57593 4.66146 4.73373 4.82700 4.86167 4.88633 4.94724 5.04447 5.06471 5.17626 5.31275 5.49170 5.52949 5.62299 5.65895 5.73344 6.01178 6.34061 6.39530 6.59078 7.15248 7.23885 7.43569 7.84700 8.36985 9.19485 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038251 B = 0.002968 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.826818 B = 9432.697663 C = 9662.365152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.638 5.638 3 C 0.106 3.894 4 C 0.111 3.889 5 H 0.166 0.834 6 C 0.499 3.501 7 O -0.577 6.577 8 N -0.698 5.698 9 C 0.162 3.838 10 C -0.122 4.122 11 C 0.142 3.858 12 N -0.609 5.609 13 C -0.262 4.262 14 H 0.068 0.932 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.297 1.297 20 H -0.287 1.287 21 C 0.177 3.823 22 C -0.127 4.127 23 N -0.716 5.716 24 C 0.691 3.309 25 O -0.637 6.637 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.421 0.579 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.001 0.999 36 H 0.056 0.944 37 H 0.250 0.750 38 H -0.010 1.010 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.612 -3.763 -16.868 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.377 5.377 3 C -0.017 4.017 4 C 0.001 3.999 5 H 0.183 0.817 6 C 0.284 3.716 7 O -0.456 6.456 8 N -0.350 5.350 9 C 0.057 3.943 10 C -0.162 4.162 11 C 0.016 3.984 12 N -0.333 5.333 13 C -0.392 4.392 14 H 0.086 0.914 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.797 3.203 18 H -0.189 1.189 19 H -0.224 1.224 20 H -0.213 1.213 21 C 0.050 3.950 22 C -0.166 4.166 23 N -0.376 5.376 24 C 0.391 3.609 25 O -0.519 6.519 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.162 0.838 31 H 0.259 0.741 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.019 0.981 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.008 0.992 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -13.832 -4.765 -16.179 21.812 hybrid contribution 1.054 0.548 0.716 1.387 sum -12.778 -4.217 -15.463 20.498 Atomic orbital electron populations 1.21620 0.74175 1.03461 1.03553 1.47278 1.07364 1.05605 1.77435 1.22674 0.84381 0.88067 1.06577 1.22160 0.98277 0.81739 0.97717 0.81675 1.21370 0.79082 0.81663 0.89506 1.90764 1.60826 1.54489 1.39501 1.45956 1.53909 1.16469 1.18672 1.20633 0.92165 0.96179 0.85326 1.22148 0.97578 1.00135 0.96359 1.20971 0.90182 0.92118 0.95113 1.44372 1.30240 1.15942 1.42716 1.19559 0.92191 0.94323 1.33136 0.91414 1.25817 0.95406 1.02440 1.00867 1.70195 0.97284 1.35482 1.55270 0.85196 0.77863 0.80515 0.76774 1.18948 1.22416 1.21339 1.20585 0.90818 0.96858 0.86692 1.22241 0.97677 0.97960 0.98761 1.44893 1.06291 1.07651 1.78756 1.16168 0.82590 0.84736 0.77368 1.90908 1.76864 1.23173 1.60986 0.91561 0.90786 0.88815 0.89361 0.83831 0.74128 0.92916 0.90692 0.92493 0.98093 0.92537 0.94055 0.99201 0.91880 0.90206 0.90453 0.72430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.44 11.22 127.77 1.43 2.87 16 2 N -0.64 -11.23 3.36 -862.59 -2.90 -14.13 16 3 C 0.11 1.04 7.34 86.58 0.64 1.68 16 4 C 0.11 1.43 4.16 44.52 0.19 1.61 16 5 H 0.17 0.58 8.14 -2.38 -0.02 0.56 16 6 C 0.50 10.75 6.91 87.66 0.61 11.36 16 7 O -0.58 -19.40 16.24 -3.02 -0.05 -19.45 16 8 N -0.70 -13.23 5.08 -442.40 -2.25 -15.48 16 9 C 0.16 4.78 2.42 45.02 0.11 4.89 16 10 C -0.12 -3.92 5.65 30.67 0.17 -3.74 16 11 C 0.14 5.92 6.52 86.36 0.56 6.48 16 12 N -0.61 -29.55 2.99 -699.12 -2.09 -31.65 16 13 C -0.26 -13.94 9.58 84.03 0.81 -13.13 16 14 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 15 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 16 N -0.94 -54.08 11.20 21.65 0.24 -53.84 16 17 Si 0.97 43.29 29.59 68.60 2.03 45.32 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 C 0.18 8.01 5.30 86.36 0.46 8.47 16 22 C -0.13 -3.96 5.55 30.67 0.17 -3.79 16 23 N -0.72 -14.59 5.62 -460.33 -2.58 -17.17 16 24 C 0.69 17.79 8.60 179.57 1.55 19.34 16 25 O -0.64 -22.39 17.29 -4.01 -0.07 -22.46 16 26 H 0.07 1.13 7.52 -2.39 -0.02 1.11 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.94 7.72 -2.39 -0.02 0.92 16 30 H 0.14 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.42 4.35 8.61 -92.71 -0.80 3.56 16 32 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 37 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.06 3.23 6.06 -2.39 -0.01 3.21 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.43 8.62 8.96 -92.71 -0.83 7.79 16 Total: -1.00 -81.91 342.85 -1.15 -83.07 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.58 Total: 12.05 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: 7.10 Total: 33.73 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -9.58 Total: -132.26 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.12 Total: -41.91 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -81.91 -1.15 -83.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003437037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.021 kcal (2) G-P(sol) polarization free energy of solvation -81.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds