Wall clock time and date at job start Fri Apr 10 2020 17:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47383 * 125.38012 * 2 1 4 4 C 1.54107 * 103.70456 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.54646 * 118.77152 * 4 3 2 6 6 C 1.50692 * 110.54800 * 241.44338 * 4 3 2 7 7 O 1.21282 * 120.00238 * 98.00208 * 6 4 3 8 8 N 1.34773 * 120.00140 * 277.99555 * 6 4 3 9 9 C 1.46498 * 120.00285 * 180.02562 * 8 6 4 10 10 H 1.09001 * 109.50124 * 35.06511 * 9 8 6 11 11 C 1.53037 * 109.52906 * 155.11402 * 9 8 6 12 12 C 1.53038 * 109.54214 * 181.29681 * 11 9 8 13 13 C 1.53191 * 109.34152 * 298.68565 * 12 11 9 14 14 N 1.46925 * 108.77463 * 54.61574 * 13 12 11 15 15 C 1.36934 * 120.62881 * 126.41501 * 14 13 12 16 16 H 1.07999 * 120.00238 * 207.67150 * 15 14 13 17 17 C 1.38813 * 120.00212 * 27.66499 * 15 14 13 18 18 N 1.31618 * 119.99784 * 17.37115 * 17 15 14 19 19 Si 1.86798 * 120.00239 * 197.36648 * 17 15 14 20 20 H 1.48495 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46727 * 120.00490 * 19 17 15 22 22 H 1.48501 * 109.46989 * 240.00226 * 19 17 15 23 23 C 1.46925 * 118.73947 * 306.39535 * 14 13 12 24 24 N 1.47056 * 103.98634 * 0.11180 * 4 3 2 25 25 C 1.33943 * 109.18253 * 359.92688 * 24 4 3 26 26 O 1.21589 * 123.04592 * 180.02562 * 25 24 4 27 27 H 1.09002 * 109.47281 * 179.88359 * 1 2 3 28 28 H 1.09003 * 109.47209 * 299.88541 * 1 2 3 29 29 H 1.08996 * 109.47218 * 59.88244 * 1 2 3 30 30 H 1.08999 * 110.59284 * 61.43356 * 3 2 1 31 31 H 1.09000 * 110.65827 * 298.52148 * 3 2 1 32 32 H 0.97008 * 119.99926 * 0.02562 * 8 6 4 33 33 H 1.09002 * 109.43391 * 61.29419 * 11 9 8 34 34 H 1.08999 * 109.48608 * 301.33963 * 11 9 8 35 35 H 1.09006 * 109.49331 * 178.71438 * 12 11 9 36 36 H 1.09006 * 109.49634 * 58.65457 * 12 11 9 37 37 H 1.08996 * 109.58281 * 174.40715 * 13 12 11 38 38 H 1.09004 * 109.58336 * 294.82760 * 13 12 11 39 39 H 0.97006 * 120.00403 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.58320 * 173.39910 * 23 14 13 41 41 H 1.09007 * 109.58437 * 293.67460 * 23 14 13 42 42 H 0.97000 * 125.40933 * 179.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3183 1.2017 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2877 0.9475 -0.8939 6 6 4.4906 1.0643 1.2402 7 8 4.5691 0.3158 2.1913 8 7 5.0656 2.2821 1.2919 9 6 5.7857 2.7017 2.4967 10 1 6.2880 1.8412 2.9386 11 6 6.8235 3.7644 2.1284 12 6 7.5980 4.1795 3.3814 13 6 6.6273 4.7836 4.4009 14 7 5.5453 3.8216 4.6514 15 6 5.2423 3.4292 5.9278 16 1 4.8059 2.4573 6.1047 17 6 5.4961 4.2806 6.9944 18 7 5.6981 5.5632 6.7790 19 14 5.5509 3.6059 8.7355 20 1 5.2941 2.1436 8.7080 21 1 6.8903 3.8619 9.3235 22 1 4.5125 4.2759 9.5588 23 6 4.7945 3.2891 3.5063 24 7 3.5537 -0.8249 -0.0018 25 6 2.2411 -1.0918 -0.0020 26 8 1.7944 -2.2226 -0.0034 27 1 -0.3634 -1.0277 -0.0021 28 1 -0.3634 0.5121 0.8910 29 1 -0.3633 0.5156 -0.8889 30 1 2.1425 1.7967 0.8961 31 1 2.1439 1.7972 -0.8961 32 1 5.0026 2.8809 0.5313 33 1 6.3184 4.6345 1.7089 34 1 7.5159 3.3566 1.3919 35 1 8.3523 4.9197 3.1142 36 1 8.0837 3.3053 3.8151 37 1 7.1561 4.9893 5.3315 38 1 6.2092 5.7086 4.0037 39 1 5.8752 6.1583 7.5244 40 1 4.1139 2.5087 3.8467 41 1 4.2248 4.0917 3.0377 42 1 4.2620 -1.4876 -0.0024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008174270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:33 Heat of formation + Delta-G solvation = -21.788161 kcal Electronic energy + Delta-G solvation = -24588.600190 eV Core-core repulsion = 20990.910212 eV Total energy + Delta-G solvation = -3597.689978 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.47617 -39.46182 -37.47066 -36.27617 -34.48803 -34.21526 -32.52964 -30.52810 -30.04657 -28.50594 -27.21851 -25.33350 -24.18145 -22.26096 -21.97650 -20.72603 -20.38712 -19.47945 -17.90056 -17.66423 -16.86763 -16.48797 -15.87531 -15.46980 -15.02390 -14.78037 -14.40674 -14.24166 -14.13796 -13.77379 -13.66758 -13.48255 -13.26394 -12.72393 -12.55122 -12.45842 -12.44609 -12.20246 -11.89306 -11.15403 -10.95350 -10.82521 -10.43857 -10.31821 -10.27442 -10.23634 -9.95126 -9.82034 -9.69438 -9.34146 -8.95087 -8.80204 -8.45092 -6.72043 -5.81909 -3.24096 2.25946 2.58319 2.83755 3.18477 3.37323 3.45561 3.49848 3.70914 4.03463 4.43072 4.50645 4.53835 4.81016 5.02944 5.15848 5.21813 5.30345 5.33414 5.47153 5.50364 5.55863 5.63022 5.67129 5.99822 6.06262 6.16127 6.42526 6.44633 6.53903 6.56536 6.61417 6.76135 6.88723 6.90285 7.24313 7.30920 7.55499 7.60316 7.80730 8.22065 8.41877 8.42884 9.18755 9.80831 10.35720 11.26781 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003743 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.414761 B = 7478.191553 C = 8219.211517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.637 5.637 3 C 0.106 3.894 4 C 0.104 3.896 5 H 0.114 0.886 6 C 0.497 3.503 7 O -0.516 6.516 8 N -0.717 5.717 9 C 0.125 3.875 10 H 0.086 0.914 11 C -0.114 4.114 12 C -0.140 4.140 13 C 0.167 3.833 14 N -0.588 5.588 15 C -0.251 4.251 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.143 3.857 24 N -0.715 5.715 25 C 0.706 3.294 26 O -0.585 6.585 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.396 0.604 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.019 0.981 39 H 0.253 0.747 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 -2.925 -18.554 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.377 5.377 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.132 0.868 6 C 0.279 3.721 7 O -0.390 6.390 8 N -0.368 5.368 9 C 0.020 3.980 10 H 0.104 0.896 11 C -0.152 4.152 12 C -0.180 4.180 13 C 0.041 3.959 14 N -0.310 5.310 15 C -0.381 4.381 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.015 3.985 24 N -0.376 5.376 25 C 0.406 3.594 26 O -0.463 6.463 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.230 0.770 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -3.486 -3.933 -17.696 18.460 hybrid contribution 0.450 0.045 0.575 0.732 sum -3.036 -3.888 -17.121 17.817 Atomic orbital electron populations 1.21432 0.75367 1.04055 1.01475 1.47054 1.06475 1.05566 1.78578 1.22348 0.86157 0.89064 1.04259 1.21861 0.97268 0.83383 0.98158 0.86806 1.20644 0.80010 0.82432 0.89033 1.90801 1.58391 1.52862 1.36918 1.46143 1.55314 1.16251 1.19101 1.21804 0.93787 0.97921 0.84506 0.89564 1.21671 0.97173 0.97770 0.98589 1.22187 0.98859 1.00743 0.96211 1.20848 0.87910 0.89906 0.97201 1.44004 1.35124 1.50561 1.01346 1.19261 1.38536 0.97945 0.82353 0.91539 1.25010 1.01549 0.94716 0.98225 1.70044 1.52492 1.01891 1.30366 0.86228 0.77343 0.78641 0.84657 1.20147 1.21486 1.21688 1.21168 0.92540 0.96130 0.88680 1.44809 1.06949 1.06199 1.79634 1.15793 0.81703 0.84632 0.77262 1.90955 1.75833 1.20927 1.58599 0.89528 0.91862 0.92015 0.89178 0.88739 0.77045 0.92143 0.93039 0.92647 0.92425 0.89231 0.96267 0.93685 0.92529 0.96439 0.72413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.00 11.22 59.85 0.67 1.67 16 2 N -0.64 -7.00 3.36 -186.46 -0.63 -7.63 16 3 C 0.11 0.86 7.34 -2.98 -0.02 0.83 16 4 C 0.10 0.94 4.16 -68.21 -0.28 0.65 16 5 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 6 C 0.50 6.45 6.91 -10.99 -0.08 6.38 16 7 O -0.52 -9.59 16.24 5.56 0.09 -9.50 16 8 N -0.72 -8.40 5.08 -53.70 -0.27 -8.67 16 9 C 0.13 2.04 2.60 -67.81 -0.18 1.86 16 10 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 11 C -0.11 -1.65 5.36 -26.69 -0.14 -1.80 16 12 C -0.14 -2.47 6.08 -26.61 -0.16 -2.63 16 13 C 0.17 3.80 5.31 -3.71 -0.02 3.78 16 14 N -0.59 -14.49 2.99 -172.32 -0.52 -15.01 16 15 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 16 H 0.07 1.88 7.89 -52.49 -0.41 1.46 16 17 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 18 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 19 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.14 2.93 6.09 -3.71 -0.02 2.91 16 24 N -0.71 -8.34 5.62 -59.33 -0.33 -8.67 16 25 C 0.71 9.99 8.61 -88.40 -0.76 9.23 16 26 O -0.59 -10.52 17.29 5.29 0.09 -10.43 16 27 H 0.09 0.83 7.52 -51.93 -0.39 0.44 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.80 7.72 -51.93 -0.40 0.39 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.40 3.07 8.60 -40.82 -0.35 2.72 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 41 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.43 4.70 8.96 -40.82 -0.37 4.33 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -36.47 342.84 -8.44 -44.91 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.40 Total: 2.42 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -1.22 Total: 15.77 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -1.13 Total: -65.21 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.18 Total: -19.93 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.47 -8.44 -44.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008174270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.117 kcal (2) G-P(sol) polarization free energy of solvation -36.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds