Wall clock time and date at job start Fri Apr 10 2020 17:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48498 * 109.47445 * 245.52209 * 3 2 1 5 5 H 1.48495 * 109.47290 * 5.52412 * 3 2 1 6 6 H 1.48503 * 109.47250 * 125.52405 * 3 2 1 7 7 C 1.38816 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99845 * 195.13944 * 7 2 1 9 9 N 1.36933 * 119.99956 * 15.13013 * 7 2 1 10 10 C 1.46935 * 120.62789 * 31.30800 * 9 7 2 11 11 C 1.53194 * 108.77357 * 126.41018 * 10 9 7 12 12 C 1.53041 * 109.31219 * 54.63473 * 11 10 9 13 13 C 1.53038 * 109.54176 * 298.63193 * 12 11 10 14 14 C 1.46926 * 120.63733 * 211.32721 * 9 7 2 15 15 H 1.09002 * 109.58720 * 113.79837 * 14 9 7 16 16 C 1.53010 * 109.58135 * 353.37509 * 14 9 7 17 17 N 1.46503 * 109.46645 * 59.68393 * 16 14 9 18 18 C 1.34780 * 119.99434 * 185.63273 * 17 16 14 19 19 O 1.21279 * 119.99995 * 4.74399 * 18 17 16 20 20 C 1.50702 * 119.99782 * 184.75208 * 18 17 16 21 21 C 1.53182 * 109.53829 * 288.97611 * 20 18 17 22 22 C 1.53107 * 109.15369 * 183.23978 * 21 20 18 23 23 O 1.42899 * 109.48408 * 57.47889 * 22 21 20 24 24 C 1.42898 * 114.09978 * 298.88605 * 23 22 21 25 25 C 1.53095 * 109.41674 * 61.16002 * 24 23 22 26 26 H 0.96994 * 119.99802 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58700 * 6.62180 * 10 9 7 28 28 H 1.09005 * 109.70143 * 246.26870 * 10 9 7 29 29 H 1.08997 * 109.50087 * 294.68205 * 11 10 9 30 30 H 1.09003 * 109.49645 * 174.58330 * 11 10 9 31 31 H 1.09006 * 109.45980 * 178.60929 * 12 11 10 32 32 H 1.09004 * 109.44956 * 58.64735 * 12 11 10 33 33 H 1.08995 * 109.50255 * 181.31524 * 13 12 11 34 34 H 1.09000 * 109.49693 * 301.42046 * 13 12 11 35 35 H 1.09001 * 109.46914 * 179.68193 * 16 14 9 36 36 H 1.08998 * 109.46808 * 299.68417 * 16 14 9 37 37 H 0.96994 * 120.00202 * 5.63114 * 17 16 14 38 38 H 1.08996 * 109.54520 * 49.15336 * 20 18 17 39 39 H 1.08994 * 109.52387 * 303.06292 * 21 20 18 40 40 H 1.08998 * 109.52303 * 63.25104 * 21 20 18 41 41 H 1.08990 * 109.41000 * 297.49663 * 22 21 20 42 42 H 1.09001 * 109.49264 * 177.50937 * 22 21 20 43 43 H 1.08999 * 109.47990 * 301.17212 * 24 23 22 44 44 H 1.09007 * 109.49351 * 181.14671 * 24 23 22 45 45 H 1.08993 * 109.52056 * 182.48945 * 25 24 23 46 46 H 1.08999 * 109.52108 * 62.29630 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0001 1.7564 -1.2742 5 1 1.2910 2.7432 0.1348 6 1 3.2023 1.6396 1.1395 7 6 2.0103 -1.2022 -0.0005 8 1 3.0621 -1.2185 0.2437 9 7 1.3612 -2.3674 -0.3106 10 6 0.2356 -2.3688 -1.2550 11 6 0.5158 -3.3981 -2.3545 12 6 0.8003 -4.7584 -1.7137 13 6 2.0397 -4.6549 -0.8218 14 6 1.7768 -3.6399 0.2950 15 1 0.9852 -4.0102 0.9465 16 6 3.0562 -3.4278 1.1069 17 7 2.8086 -2.4385 2.1588 18 6 3.8259 -2.0062 2.9300 19 8 4.9594 -2.3699 2.6985 20 6 3.5546 -1.0709 4.0802 21 6 3.1784 0.3116 3.5385 22 6 2.9839 1.2752 4.7124 23 8 4.1793 1.3219 5.4938 24 6 4.5523 0.0664 6.0652 25 6 4.8121 -0.9452 4.9458 26 1 -0.4849 0.8400 -0.0004 27 1 0.1301 -1.3790 -1.6993 28 1 -0.6830 -2.6340 -0.7315 29 1 1.3813 -3.0820 -2.9367 30 1 -0.3531 -3.4783 -3.0077 31 1 0.9758 -5.4982 -2.4948 32 1 -0.0560 -5.0622 -1.1115 33 1 2.2555 -5.6296 -0.3842 34 1 2.8909 -4.3270 -1.4185 35 1 3.3597 -4.3716 1.5599 36 1 3.8482 -3.0689 0.4497 37 1 1.9127 -2.0947 2.3001 38 1 2.7347 -1.4620 4.6826 39 1 3.9769 0.6802 2.8947 40 1 2.2528 0.2396 2.9675 41 1 2.1575 0.9283 5.3326 42 1 2.7593 2.2716 4.3317 43 1 3.7465 -0.2963 6.7033 44 1 5.4578 0.1917 6.6592 45 1 5.0536 -1.9151 5.3803 46 1 5.6446 -0.6027 4.3313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024299854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:52 Heat of formation + Delta-G solvation = -95.075678 kcal Electronic energy + Delta-G solvation = -26065.818899 eV Core-core repulsion = 22568.491280 eV Total energy + Delta-G solvation = -3497.327619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27935 -39.84648 -39.06376 -35.70099 -34.89085 -34.68625 -32.37157 -31.95324 -31.66020 -28.02634 -27.07931 -25.70690 -24.50443 -23.81119 -22.41960 -21.90181 -20.91292 -20.56245 -18.66136 -17.88496 -17.28836 -17.21863 -16.92842 -16.50976 -16.06202 -15.76475 -15.65334 -15.47288 -15.03075 -14.77737 -14.67459 -14.43832 -14.16612 -13.99033 -13.60574 -13.36643 -13.31456 -12.88134 -12.73039 -12.61308 -12.45560 -12.31444 -12.27792 -12.02132 -11.80452 -11.62308 -11.54164 -11.46346 -11.14768 -11.08492 -10.84135 -10.50024 -10.38946 -9.78129 -8.53842 -7.81556 -5.27395 1.40708 1.47135 1.51138 1.72262 2.41379 2.50891 2.95831 3.33777 3.57880 3.67690 3.77477 3.80325 4.00679 4.01439 4.21186 4.25168 4.27214 4.31557 4.43097 4.50748 4.55203 4.60961 4.64853 4.69344 4.75492 4.78229 4.84543 4.87016 4.99693 5.08435 5.13197 5.14146 5.21228 5.27486 5.27702 5.38438 5.46015 5.62752 5.67250 5.77035 5.83232 6.23982 6.45669 6.75065 7.21404 7.38299 7.90126 8.43863 9.22671 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.005939 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.815787 B = 4713.803339 C = 5950.642014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 0.919 3.081 4 H -0.303 1.303 5 H -0.295 1.295 6 H -0.259 1.259 7 C -0.232 4.232 8 H 0.056 0.944 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.123 4.123 14 C 0.160 3.840 15 H 0.036 0.964 16 C 0.138 3.862 17 N -0.691 5.691 18 C 0.510 3.490 19 O -0.596 6.596 20 C -0.101 4.101 21 C -0.144 4.144 22 C 0.067 3.933 23 O -0.402 6.402 24 C 0.062 3.938 25 C -0.130 4.130 26 H 0.248 0.752 27 H 0.045 0.955 28 H 0.004 0.996 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.411 0.589 38 H 0.119 0.881 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 -5.612 8.217 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.220 4.220 3 Si 0.750 3.250 4 H -0.231 1.231 5 H -0.221 1.221 6 H -0.184 1.184 7 C -0.363 4.363 8 H 0.073 0.927 9 N -0.324 5.324 10 C 0.054 3.946 11 C -0.175 4.175 12 C -0.139 4.139 13 C -0.162 4.162 14 C 0.054 3.946 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.339 5.339 18 C 0.297 3.703 19 O -0.479 6.479 20 C -0.122 4.122 21 C -0.182 4.182 22 C -0.009 4.009 23 O -0.321 6.321 24 C -0.014 4.014 25 C -0.168 4.168 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.022 0.978 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.247 0.753 38 H 0.137 0.863 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.131 0.869 45 H 0.105 0.895 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.481 -5.591 8.101 10.150 hybrid contribution -0.193 1.204 -0.733 1.423 sum 2.287 -4.387 7.368 8.875 Atomic orbital electron populations 1.70097 1.05830 1.25312 1.55477 1.25345 0.95414 0.99498 1.01748 0.86135 0.78573 0.82050 0.78267 1.23083 1.22116 1.18376 1.19075 0.91603 0.85062 1.40543 0.92669 1.44231 1.37276 1.02588 1.48337 1.20550 0.88257 0.96824 0.88997 1.22060 1.00361 0.96766 0.98348 1.21339 0.97537 0.96325 0.98732 1.21901 0.98187 0.98803 0.97318 1.20893 0.93282 0.87482 0.92963 0.94662 1.21248 0.97461 0.90988 0.88923 1.45961 1.12001 1.42875 1.33104 1.20943 0.84359 0.80948 0.84043 1.90600 1.23225 1.60683 1.73370 1.21348 1.01358 0.94457 0.95003 1.22194 1.02206 0.94490 0.99298 1.22595 0.87398 0.99954 0.90972 1.87897 1.44091 1.32288 1.67809 1.22779 1.02045 0.82802 0.93787 1.21982 0.96054 1.01278 0.97495 0.94297 0.93604 0.97815 0.93883 0.91736 0.90853 0.92231 0.89916 0.93173 0.90906 0.94155 0.75283 0.86348 0.93589 0.90588 0.90439 0.88586 0.90743 0.86889 0.89482 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.64 11.32 21.65 0.25 -49.40 16 2 C -0.02 -1.20 4.93 84.86 0.42 -0.78 16 3 Si 0.92 42.96 29.45 68.60 2.02 44.98 16 4 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.26 -11.51 5.82 99.48 0.58 -10.93 16 7 C -0.23 -11.50 7.04 84.03 0.59 -10.91 16 8 H 0.06 2.89 5.87 -2.91 -0.02 2.87 16 9 N -0.60 -26.85 2.97 -675.17 -2.01 -28.86 16 10 C 0.18 7.98 5.27 86.36 0.46 8.43 16 11 C -0.14 -4.80 6.08 30.67 0.19 -4.61 16 12 C -0.10 -2.97 5.88 30.62 0.18 -2.79 16 13 C -0.12 -3.75 5.37 30.67 0.16 -3.59 16 14 C 0.16 5.85 3.00 44.98 0.14 5.98 16 15 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 16 C 0.14 5.07 4.46 86.38 0.39 5.45 16 17 N -0.69 -25.62 3.65 -463.03 -1.69 -27.31 16 18 C 0.51 18.97 7.06 87.66 0.62 19.59 16 19 O -0.60 -25.98 15.90 -3.03 -0.05 -26.03 16 20 C -0.10 -2.99 2.60 -11.42 -0.03 -3.02 16 21 C -0.14 -4.68 4.99 30.69 0.15 -4.52 16 22 C 0.07 1.79 6.84 72.02 0.49 2.29 16 23 O -0.40 -11.03 10.77 -148.98 -1.60 -12.64 16 24 C 0.06 1.34 6.84 72.01 0.49 1.83 16 25 C -0.13 -3.47 4.84 30.69 0.15 -3.33 16 26 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 27 H 0.05 2.36 6.25 -2.39 -0.01 2.34 16 28 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 1.78 8.14 -2.38 -0.02 1.77 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.04 1.70 7.40 -2.39 -0.02 1.68 16 37 H 0.41 15.64 7.63 -92.71 -0.71 14.93 16 38 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.05 1.76 7.32 -2.39 -0.02 1.75 16 40 H 0.08 2.72 8.01 -2.39 -0.02 2.70 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 42 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.05 1.71 7.89 -2.39 -0.02 1.69 16 Total: -1.00 -61.71 350.14 1.43 -60.28 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.12 Total: 28.95 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 4.39 Total: 10.02 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.45 Total: -105.56 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.65 Total: -38.67 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.02 Total: 44.98 kcal Total: -61.71 1.43 -60.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024299854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.792 kcal (2) G-P(sol) polarization free energy of solvation -61.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds