Wall clock time and date at job start Fri Apr 10 2020 17:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 110.27066 * 2 1 4 4 C 1.34766 * 120.00263 * 60.63496 * 3 2 1 5 5 O 1.21585 * 120.00217 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99873 * 180.02562 * 4 3 2 7 7 C 1.46508 * 119.99828 * 179.97438 * 6 4 3 8 8 C 1.53037 * 109.46142 * 275.02470 * 7 6 4 9 9 C 1.53186 * 109.31425 * 178.59984 * 8 7 6 10 10 N 1.46932 * 108.76218 * 54.65745 * 9 8 7 11 11 C 1.36934 * 120.62920 * 126.40443 * 10 9 8 12 12 H 1.07998 * 120.00530 * 332.60637 * 11 10 9 13 13 C 1.38812 * 119.99838 * 152.60162 * 11 10 9 14 14 N 1.31625 * 120.00041 * 159.36408 * 13 11 10 15 15 Si 1.86800 * 120.00328 * 339.36569 * 13 11 10 16 16 H 1.48502 * 109.47047 * 92.90664 * 15 13 11 17 17 H 1.48500 * 109.47425 * 212.90812 * 15 13 11 18 18 H 1.48503 * 109.46719 * 332.90828 * 15 13 11 19 19 C 1.46926 * 118.74055 * 306.38278 * 10 9 8 20 20 C 1.53044 * 109.45632 * 154.97079 * 7 6 4 21 21 C 1.54590 * 110.39577 * 237.85389 * 2 1 3 22 22 C 1.54936 * 102.92310 * 219.08344 * 21 2 1 23 23 N 1.48532 * 103.22770 * 37.40919 * 22 21 2 24 24 C 1.47900 * 105.82084 * 320.79564 * 23 22 21 25 25 H 1.08997 * 109.47170 * 299.36757 * 1 2 3 26 26 H 1.08991 * 109.47129 * 59.36895 * 1 2 3 27 27 H 1.09003 * 109.46545 * 179.36702 * 1 2 3 28 28 H 0.97002 * 119.99204 * 240.63612 * 3 2 1 29 29 H 0.96996 * 120.00514 * 359.97438 * 6 4 3 30 30 H 1.09003 * 109.45574 * 34.99814 * 7 6 4 31 31 H 1.09000 * 109.49918 * 298.57272 * 8 7 6 32 32 H 1.09004 * 109.49570 * 58.66472 * 8 7 6 33 33 H 1.09003 * 109.59923 * 294.87324 * 9 8 7 34 34 H 1.08995 * 109.58759 * 174.43516 * 9 8 7 35 35 H 0.96995 * 120.00098 * 180.02562 * 14 13 11 36 36 H 1.08999 * 109.58598 * 293.82577 * 19 10 9 37 37 H 1.08994 * 109.59123 * 173.39888 * 19 10 9 38 38 H 1.08996 * 109.49521 * 301.33555 * 20 7 6 39 39 H 1.09001 * 109.49889 * 61.43433 * 20 7 6 40 40 H 1.09007 * 110.72432 * 337.43730 * 21 2 1 41 41 H 1.08995 * 110.72698 * 100.72295 * 21 2 1 42 42 H 1.09004 * 110.66741 * 278.98015 * 22 21 2 43 43 H 1.08998 * 110.67135 * 155.84517 * 22 21 2 44 44 H 1.00903 * 111.00302 * 200.27904 * 23 22 21 45 45 H 1.09000 * 109.91813 * 144.67947 * 24 23 22 46 46 H 1.09000 * 109.91905 * 265.97245 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.7342 2.2047 1.0171 5 8 1.0389 1.8136 1.9346 6 7 2.2008 3.4692 1.0168 7 6 1.8705 4.3722 2.1223 8 6 0.5134 5.0279 1.8569 9 6 0.1553 5.9443 3.0311 10 7 1.2548 6.8964 3.2398 11 6 1.0141 8.2441 3.2712 12 1 0.1732 8.6552 2.7325 13 6 1.8510 9.0819 3.9955 14 7 1.8918 10.3686 3.7214 15 14 2.9193 8.3833 5.3594 16 1 4.2550 8.0341 4.8122 17 1 3.0741 9.3956 6.4347 18 1 2.2781 7.1646 5.9153 19 6 2.6172 6.3751 3.4148 20 6 2.9475 5.4534 2.2365 21 6 2.0688 -0.7710 -1.2268 22 6 3.2882 -1.5325 -0.6494 23 7 2.8334 -1.9214 0.7101 24 6 2.0646 -0.7671 1.2236 25 1 -0.3633 0.5040 0.8956 26 1 -0.3633 0.5236 -0.8842 27 1 -0.3632 -1.0277 -0.0114 28 1 2.5920 1.6865 -0.7322 29 1 2.7552 3.7815 0.2847 30 1 1.8245 3.8057 3.0524 31 1 0.5660 5.6147 0.9399 32 1 -0.2492 4.2562 1.7523 33 1 0.0137 5.3465 3.9315 34 1 -0.7611 6.4886 2.8034 35 1 2.4768 10.9540 4.2273 36 1 2.6763 5.8124 4.3464 37 1 3.3251 7.2035 3.4403 38 1 3.9175 4.9847 2.4020 39 1 2.9770 6.0363 1.3159 40 1 1.3207 -1.4692 -1.6026 41 1 2.3810 -0.0801 -2.0100 42 1 4.1582 -0.8783 -0.5914 43 1 3.5092 -2.4159 -1.2485 44 1 3.6189 -2.1280 1.3089 45 1 1.2327 -1.1173 1.8347 46 1 2.7148 -0.1202 1.8125 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597433388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:39 Heat of formation + Delta-G solvation = -25.280342 kcal Electronic energy + Delta-G solvation = -25025.860227 eV Core-core repulsion = 21563.851912 eV Total energy + Delta-G solvation = -3462.008315 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.195 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60481 -39.95622 -38.80806 -36.02582 -35.08671 -34.05006 -32.29144 -31.97450 -30.81728 -30.23899 -26.89230 -26.41386 -24.56424 -23.71349 -22.81108 -22.05088 -21.25634 -20.57400 -19.38877 -18.68080 -17.96969 -17.38768 -16.64160 -16.37193 -16.06922 -15.95116 -15.44530 -15.35252 -15.22655 -14.88395 -14.55384 -14.43088 -14.28554 -14.18071 -13.80140 -13.49180 -13.37903 -12.99305 -12.79915 -12.59917 -12.54328 -12.36260 -12.28142 -12.11008 -12.02725 -11.91183 -11.75391 -11.56590 -11.35075 -11.03797 -10.70566 -10.28399 -9.84132 -9.49046 -8.97603 -8.16913 -5.49295 1.28734 1.42464 1.51149 1.68154 2.20534 2.40919 3.05085 3.16412 3.32508 3.42762 3.52885 3.70776 3.78292 3.94029 3.99736 4.23063 4.31995 4.32213 4.42792 4.47888 4.59230 4.62921 4.69300 4.72731 4.79632 4.87077 4.88089 4.91092 4.97132 5.03308 5.06967 5.07886 5.12502 5.15839 5.32616 5.40270 5.51083 5.60710 5.83854 5.86167 6.04777 6.12419 6.32180 6.89928 7.15748 7.60522 7.66306 8.01172 9.02972 Molecular weight = 296.20amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.003172 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.285457 B = 8825.795098 C = 9072.609242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.181 3.819 3 N -0.727 5.727 4 C 0.700 3.300 5 O -0.622 6.622 6 N -0.729 5.729 7 C 0.181 3.819 8 C -0.126 4.126 9 C 0.147 3.853 10 N -0.619 5.619 11 C -0.249 4.249 12 H 0.053 0.947 13 C -0.033 4.033 14 N -0.956 5.956 15 Si 0.944 3.056 16 H -0.268 1.268 17 H -0.311 1.311 18 H -0.266 1.266 19 C 0.122 3.878 20 C -0.126 4.126 21 C -0.116 4.116 22 C 0.035 3.965 23 N -0.678 5.678 24 C 0.047 3.953 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.409 0.591 29 H 0.408 0.592 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.057 0.943 35 H 0.262 0.738 36 H 0.031 0.969 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.048 0.952 43 H 0.099 0.901 44 H 0.343 0.657 45 H 0.066 0.934 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.225 -25.028 -12.828 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.094 3.906 3 N -0.384 5.384 4 C 0.400 3.600 5 O -0.503 6.503 6 N -0.384 5.384 7 C 0.076 3.924 8 C -0.166 4.166 9 C 0.022 3.978 10 N -0.344 5.344 11 C -0.379 4.379 12 H 0.071 0.929 13 C -0.228 4.228 14 N -0.602 5.602 15 Si 0.773 3.227 16 H -0.194 1.194 17 H -0.240 1.240 18 H -0.191 1.191 19 C -0.004 4.004 20 C -0.166 4.166 21 C -0.154 4.154 22 C -0.093 4.093 23 N -0.308 5.308 24 C -0.083 4.083 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.246 0.754 29 H 0.244 0.756 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.117 0.883 44 H 0.159 0.841 45 H 0.085 0.915 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.074 -25.679 -12.162 28.704 hybrid contribution 1.397 1.485 0.694 2.154 sum 5.471 -24.194 -11.468 27.328 Atomic orbital electron populations 1.22122 0.94028 1.02624 1.02286 1.20981 0.94159 0.79767 0.95732 1.45261 1.56772 1.11912 1.24460 1.16143 0.79992 0.80993 0.82840 1.90890 1.44031 1.76857 1.38474 1.45137 1.56244 1.10394 1.26625 1.20466 0.93981 0.88850 0.89145 1.22195 0.97301 0.98074 0.99080 1.21009 0.90612 0.90616 0.95610 1.44516 1.02680 1.02122 1.85053 1.18869 1.12812 0.82127 1.24045 0.92925 1.25883 1.01000 0.95171 1.00728 1.69959 1.42222 1.05362 1.42682 0.85952 0.79393 0.77217 0.80135 1.19424 1.24019 1.19064 1.21369 0.86432 0.96195 0.96375 1.22151 0.98317 0.96171 0.99930 1.22840 0.98179 0.98979 0.95401 1.23157 0.96159 0.99846 0.90171 1.63134 1.26560 1.36376 1.04737 1.22884 0.97830 0.91115 0.96486 0.93289 0.91865 0.90671 0.75396 0.75589 0.91628 0.92036 0.91887 0.95401 0.92409 0.92881 0.95130 0.92339 0.89387 0.90885 0.88447 0.88158 0.93405 0.88319 0.84086 0.91529 0.95449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.15 71.98 0.59 -2.38 16 2 C 0.18 3.07 0.95 4.48 0.00 3.07 16 3 N -0.73 -12.38 5.09 -434.00 -2.21 -14.59 16 4 C 0.70 17.67 7.69 179.06 1.38 19.05 16 5 O -0.62 -21.04 13.29 -3.98 -0.05 -21.09 16 6 N -0.73 -16.86 5.08 -457.67 -2.33 -19.18 16 7 C 0.18 5.47 2.42 45.02 0.11 5.58 16 8 C -0.13 -4.21 5.65 30.67 0.17 -4.04 16 9 C 0.15 5.93 6.52 86.36 0.56 6.49 16 10 N -0.62 -29.20 2.77 -699.10 -1.94 -31.13 16 11 C -0.25 -14.15 10.04 84.03 0.84 -13.31 16 12 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 13 C -0.03 -1.93 5.23 84.86 0.44 -1.48 16 14 N -0.96 -59.90 13.97 21.65 0.30 -59.60 16 15 Si 0.94 46.37 24.34 68.60 1.67 48.04 16 16 H -0.27 -12.14 6.62 99.48 0.66 -11.48 16 17 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 18 H -0.27 -12.74 6.64 99.48 0.66 -12.08 16 19 C 0.12 5.02 4.20 86.36 0.36 5.39 16 20 C -0.13 -3.91 5.55 30.67 0.17 -3.73 16 21 C -0.12 -1.17 6.28 31.80 0.20 -0.97 16 22 C 0.04 0.37 7.55 86.65 0.65 1.03 16 23 N -0.68 -10.55 7.51 -502.21 -3.77 -14.32 16 24 C 0.05 0.97 6.02 86.45 0.52 1.49 16 25 H 0.05 1.31 6.30 -2.39 -0.02 1.29 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.41 4.30 8.26 -92.71 -0.77 3.53 16 29 H 0.41 6.83 8.62 -92.71 -0.80 6.03 16 30 H 0.07 2.26 7.58 -2.39 -0.02 2.25 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 35 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.03 1.25 7.08 -2.39 -0.02 1.24 16 37 H 0.06 2.63 4.50 -2.39 -0.01 2.62 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.10 0.92 7.86 -2.38 -0.02 0.90 16 41 H 0.10 0.59 7.73 -2.39 -0.02 0.57 16 42 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.34 4.69 8.92 -89.69 -0.80 3.89 16 45 H 0.07 1.62 7.68 -2.39 -0.02 1.60 16 46 H 0.03 0.67 7.30 -2.39 -0.02 0.65 16 Total: -1.00 -72.18 348.03 -3.78 -75.95 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -1.46 Total: 19.73 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 6.01 Total: 16.18 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -9.94 Total: -138.82 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.67 Total: 48.04 kcal Total: -72.18 -3.78 -75.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597433388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.674 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds