Wall clock time and date at job start Fri Apr 10 2020 17:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47225 * 2 1 4 4 C 1.47012 * 110.99748 * 293.95264 * 3 2 1 5 5 C 1.53093 * 109.25718 * 182.39038 * 4 3 2 6 6 O 1.43014 * 109.26233 * 303.15156 * 5 4 3 7 7 C 1.43023 * 113.73498 * 58.67317 * 6 5 4 8 8 H 1.08991 * 109.50860 * 61.26600 * 7 6 5 9 9 C 1.50698 * 109.50487 * 181.35416 * 7 6 5 10 10 O 1.21280 * 120.00047 * 8.49671 * 9 7 6 11 11 N 1.34776 * 119.99985 * 188.50300 * 9 7 6 12 12 C 1.46931 * 120.63172 * 184.97261 * 11 9 7 13 13 C 1.52755 * 109.00806 * 233.58269 * 12 11 9 14 14 C 1.53047 * 109.38384 * 305.58795 * 13 12 11 15 15 C 1.53039 * 109.53793 * 61.23911 * 14 13 12 16 16 H 1.09005 * 109.49872 * 58.58693 * 15 14 13 17 17 C 1.50701 * 109.49887 * 178.68349 * 15 14 13 18 18 H 1.07998 * 120.00170 * 119.83941 * 17 15 14 19 19 C 1.37877 * 120.00082 * 299.83923 * 17 15 14 20 20 N 1.31517 * 119.99615 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 120.00055 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47080 * 90.00239 * 21 19 17 23 23 H 1.48506 * 109.46696 * 209.99941 * 21 19 17 24 24 H 1.48494 * 109.46966 * 329.99695 * 21 19 17 25 25 C 1.46925 * 120.62821 * 5.25244 * 11 9 7 26 26 C 1.47108 * 110.98953 * 57.60715 * 3 2 1 27 27 H 1.08996 * 109.47178 * 59.99754 * 1 2 3 28 28 H 1.09000 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46756 * 299.99830 * 1 2 3 30 30 H 1.08997 * 109.46962 * 239.99499 * 2 1 3 31 31 H 1.09001 * 109.47298 * 119.99768 * 2 1 3 32 32 H 1.09004 * 109.50770 * 62.45848 * 4 3 2 33 33 H 1.08998 * 109.54383 * 302.35202 * 4 3 2 34 34 H 1.08999 * 109.50954 * 183.21909 * 5 4 3 35 35 H 1.09003 * 109.50864 * 63.08915 * 5 4 3 36 36 H 1.08998 * 109.58418 * 353.41858 * 12 11 9 37 37 H 1.08999 * 109.58355 * 113.84401 * 12 11 9 38 38 H 1.08995 * 109.56725 * 185.55170 * 13 12 11 39 39 H 1.08998 * 109.39203 * 65.51246 * 13 12 11 40 40 H 1.09000 * 109.45745 * 301.22151 * 14 13 12 41 41 H 1.08994 * 109.45911 * 181.26112 * 14 13 12 42 42 H 0.97006 * 119.99621 * 179.97438 * 20 19 17 43 43 H 1.09012 * 109.58392 * 246.15742 * 25 11 9 44 44 H 1.08996 * 109.58887 * 6.43673 * 25 11 9 45 45 H 1.09006 * 109.55881 * 57.68551 * 26 3 2 46 46 H 1.09001 * 109.49916 * 297.53123 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6700 2.0674 -1.2543 5 6 2.2492 3.4844 -1.2367 6 8 1.7595 4.1800 -0.0871 7 6 2.0828 3.5434 1.1521 8 1 3.1658 3.4931 1.2637 9 6 1.4956 4.3344 2.2924 10 8 0.7364 5.2527 2.0659 11 7 1.8141 4.0215 3.5641 12 6 1.1676 4.7108 4.6891 13 6 2.2455 5.2799 5.6097 14 6 3.2024 4.1598 6.0245 15 6 3.8825 3.5811 4.7816 16 1 4.4217 4.3722 4.2604 17 6 4.8484 2.5004 5.1939 18 1 4.7180 1.4920 4.8300 19 6 5.8987 2.7989 6.0358 20 7 6.0578 4.0270 6.4786 21 14 7.0956 1.4591 6.5475 22 1 8.2167 1.3993 5.5755 23 1 7.6287 1.7618 7.9001 24 1 6.3928 0.1513 6.5737 25 6 2.8190 2.9889 3.8516 26 6 1.5016 2.1270 1.1597 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.5854 2.1187 -1.3506 33 1 2.0844 1.5151 -2.0977 34 1 1.9443 4.0135 -2.1395 35 1 3.3372 3.4324 -1.1945 36 1 0.5456 5.5223 4.3116 37 1 0.5518 4.0040 5.2454 38 1 1.7792 5.7072 6.4973 39 1 2.8003 6.0551 5.0813 40 1 2.6431 3.3736 6.5316 41 1 3.9591 4.5600 6.6994 42 1 6.7965 4.2370 7.0713 43 1 2.3405 2.1388 4.3382 44 1 3.2845 2.6629 2.9215 45 1 1.7940 1.6186 2.0786 46 1 0.4144 2.1794 1.1021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:56 Heat of formation + Delta-G solvation = -93.612062 kcal Electronic energy + Delta-G solvation = -25790.096414 eV Core-core repulsion = 22292.832262 eV Total energy + Delta-G solvation = -3497.264152 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.73992 -40.18564 -38.42737 -37.23988 -35.21429 -33.88731 -32.30146 -31.77342 -31.51704 -28.04240 -26.97478 -26.49935 -25.23390 -24.00252 -23.15124 -21.71504 -20.98455 -20.00122 -18.71554 -18.10653 -17.64122 -17.24046 -16.78596 -16.42603 -16.35391 -16.00413 -15.73803 -15.34418 -15.09597 -14.88223 -14.80690 -14.54394 -14.39182 -13.81323 -13.74006 -13.59415 -13.34730 -12.91903 -12.84524 -12.78756 -12.65736 -12.54719 -12.41499 -12.01109 -11.93167 -11.79651 -11.59933 -11.56378 -11.31898 -10.82903 -10.76301 -10.64243 -10.39657 -9.55950 -9.40308 -8.05510 -6.20422 1.41276 1.46333 1.48467 1.56985 1.75603 2.46780 2.71742 2.90286 3.22695 3.51469 3.65706 3.84743 3.94076 4.05733 4.12971 4.21497 4.22386 4.27761 4.30699 4.38751 4.46404 4.52772 4.54147 4.57369 4.62265 4.76776 4.80265 4.85810 4.88341 4.94785 4.97786 5.01653 5.10384 5.25616 5.28672 5.41392 5.58669 5.66321 5.83069 5.94047 5.98463 6.01414 6.11064 6.32655 6.42237 6.90775 7.06917 7.48579 8.98632 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.004957 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.054727 B = 5647.669791 C = 6700.805815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 N -0.541 5.541 4 C 0.016 3.984 5 C 0.053 3.947 6 O -0.387 6.387 7 C 0.083 3.917 8 H 0.090 0.910 9 C 0.517 3.483 10 O -0.574 6.574 11 N -0.599 5.599 12 C 0.117 3.883 13 C -0.125 4.125 14 C -0.106 4.106 15 C 0.036 3.964 16 H -0.010 1.010 17 C -0.527 4.527 18 H 0.065 0.935 19 C 0.016 3.984 20 N -0.917 5.917 21 Si 0.953 3.047 22 H -0.280 1.280 23 H -0.289 1.289 24 H -0.262 1.262 25 C 0.122 3.878 26 C 0.038 3.962 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.259 0.741 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 -7.993 -12.086 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.078 4.078 3 N -0.266 5.266 4 C -0.112 4.112 5 C -0.023 4.023 6 O -0.305 6.305 7 C 0.022 3.978 8 H 0.107 0.893 9 C 0.305 3.695 10 O -0.454 6.454 11 N -0.331 5.331 12 C -0.005 4.005 13 C -0.163 4.163 14 C -0.144 4.144 15 C 0.017 3.983 16 H 0.008 0.992 17 C -0.566 4.566 18 H 0.084 0.916 19 C -0.183 4.183 20 N -0.557 5.557 21 Si 0.779 3.221 22 H -0.206 1.206 23 H -0.215 1.215 24 H -0.187 1.187 25 C 0.000 4.000 26 C -0.090 4.090 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.117 0.883 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.183 -7.266 -12.071 16.818 hybrid contribution 0.279 -0.303 0.564 0.698 sum -8.904 -7.569 -11.507 16.401 Atomic orbital electron populations 1.22401 0.97714 1.03209 1.01512 1.22280 0.93304 0.87935 1.04247 1.62476 1.59064 1.03255 1.01760 1.22889 0.99567 0.95445 0.93261 1.23044 0.99119 0.92148 0.88011 1.88057 1.78717 1.50111 1.13632 1.21842 0.99856 0.91828 0.84292 0.89291 1.20462 0.81118 0.83797 0.84157 1.90620 1.38563 1.31558 1.84625 1.48269 1.40783 1.39273 1.04821 1.21570 0.95004 0.97329 0.86623 1.21812 0.97069 0.98428 0.99005 1.21451 0.96951 0.96138 0.99838 1.18924 0.91991 0.94804 0.92552 0.99195 1.21416 1.10549 0.95948 1.28663 0.91637 1.25694 0.99270 0.97175 0.96196 1.70037 1.31261 1.20045 1.34310 0.85635 0.79273 0.80062 0.77153 1.20555 1.21538 1.18656 1.22062 0.88370 0.89241 1.00309 1.22591 0.97925 0.92011 0.96516 0.92535 0.90363 0.93689 0.88509 0.90090 0.93704 0.86762 0.85867 0.91795 0.90258 0.89598 0.89874 0.94563 0.93841 0.91962 0.93182 0.90467 0.89889 0.88303 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 9.20 71.98 0.66 -2.37 16 2 C 0.05 0.83 6.10 86.30 0.53 1.36 16 3 N -0.54 -11.85 4.94 -894.97 -4.42 -16.27 16 4 C 0.02 0.30 5.33 86.31 0.46 0.76 16 5 C 0.05 1.18 7.01 72.01 0.50 1.69 16 6 O -0.39 -12.66 10.02 -130.11 -1.30 -13.97 16 7 C 0.08 2.70 2.36 29.88 0.07 2.77 16 8 H 0.09 2.97 6.99 -2.39 -0.02 2.95 16 9 C 0.52 19.80 7.05 87.66 0.62 20.42 16 10 O -0.57 -25.62 15.94 15.84 0.25 -25.37 16 11 N -0.60 -21.95 2.98 -819.74 -2.44 -24.39 16 12 C 0.12 4.02 6.41 86.22 0.55 4.57 16 13 C -0.12 -4.71 6.06 30.53 0.19 -4.52 16 14 C -0.11 -4.69 4.96 30.62 0.15 -4.54 16 15 C 0.04 1.70 2.25 -11.46 -0.03 1.68 16 16 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 17 C -0.53 -26.63 8.56 25.60 0.22 -26.41 16 18 H 0.07 3.14 7.74 -2.91 -0.02 3.12 16 19 C 0.02 0.81 5.30 84.65 0.45 1.26 16 20 N -0.92 -51.19 11.32 21.45 0.24 -50.95 16 21 Si 0.95 41.36 29.54 68.60 2.03 43.38 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 C 0.12 4.52 4.33 86.36 0.37 4.90 16 26 C 0.04 1.01 4.11 86.30 0.35 1.37 16 27 H 0.06 0.90 6.61 -2.39 -0.02 0.88 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.85 6.42 -2.38 -0.02 0.84 16 30 H 0.10 1.28 8.11 -2.39 -0.02 1.26 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 0.88 6.59 -2.38 -0.02 0.86 16 33 H 0.11 1.53 8.12 -2.39 -0.02 1.51 16 34 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 2.79 7.00 -2.39 -0.02 2.77 16 37 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 3.21 6.05 -2.39 -0.01 3.19 16 42 H 0.26 13.91 8.31 -92.70 -0.77 13.13 16 43 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 44 H 0.08 2.92 5.04 -2.39 -0.01 2.91 16 45 H 0.10 2.57 6.24 -2.38 -0.01 2.56 16 46 H 0.05 1.25 6.41 -2.39 -0.02 1.24 16 Total: -1.00 -64.75 346.15 0.42 -64.33 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.96 Total: 20.30 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 5.10 Total: 2.93 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -6.62 Total: -91.61 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.05 Total: -39.34 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -64.75 0.42 -64.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.279 kcal (2) G-P(sol) polarization free energy of solvation -64.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds