Wall clock time and date at job start Fri Apr 10 2020 17:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47497 * 2 1 4 4 C 1.47016 * 110.99529 * 66.04462 * 3 2 1 5 5 C 1.53102 * 109.25606 * 177.60836 * 4 3 2 6 6 O 1.43016 * 109.25864 * 56.84869 * 5 4 3 7 7 C 1.43018 * 113.73600 * 301.32949 * 6 5 4 8 8 H 1.08995 * 109.51066 * 298.73603 * 7 6 5 9 9 C 1.50708 * 109.54028 * 178.62534 * 7 6 5 10 10 O 1.21282 * 119.99773 * 355.19408 * 9 7 6 11 11 N 1.34776 * 119.99770 * 175.19497 * 9 7 6 12 12 C 1.46924 * 120.63524 * 359.72219 * 11 9 7 13 13 C 1.52755 * 109.01040 * 233.58458 * 12 11 9 14 14 C 1.53040 * 109.38182 * 305.58540 * 13 12 11 15 15 C 1.53036 * 109.53808 * 61.24086 * 14 13 12 16 16 H 1.09000 * 109.49843 * 58.58508 * 15 14 13 17 17 C 1.50696 * 109.52241 * 178.66602 * 15 14 13 18 18 H 1.08000 * 119.99900 * 119.86013 * 17 15 14 19 19 C 1.37876 * 120.00291 * 299.84939 * 17 15 14 20 20 N 1.31513 * 119.99888 * 180.02562 * 19 17 15 21 21 Si 1.86802 * 119.99922 * 0.02562 * 19 17 15 22 22 H 1.48501 * 109.47341 * 89.99543 * 21 19 17 23 23 H 1.48500 * 109.47022 * 209.99803 * 21 19 17 24 24 H 1.48500 * 109.46983 * 329.99627 * 21 19 17 25 25 C 1.46925 * 120.62726 * 180.02562 * 11 9 7 26 26 C 1.47014 * 111.00085 * 302.41113 * 3 2 1 27 27 H 1.09006 * 109.46722 * 59.99497 * 1 2 3 28 28 H 1.08995 * 109.47391 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47295 * 300.00360 * 1 2 3 30 30 H 1.09000 * 109.47563 * 240.00119 * 2 1 3 31 31 H 1.09002 * 109.47087 * 120.00201 * 2 1 3 32 32 H 1.08999 * 109.50576 * 297.53813 * 4 3 2 33 33 H 1.09000 * 109.51010 * 57.67872 * 4 3 2 34 34 H 1.08997 * 109.50964 * 176.78330 * 5 4 3 35 35 H 1.08997 * 109.50814 * 296.91371 * 5 4 3 36 36 H 1.09012 * 109.58224 * 353.41561 * 12 11 9 37 37 H 1.08998 * 109.59038 * 113.83595 * 12 11 9 38 38 H 1.08998 * 109.56700 * 185.54908 * 13 12 11 39 39 H 1.09002 * 109.38912 * 65.51176 * 13 12 11 40 40 H 1.08991 * 109.45927 * 301.21674 * 14 13 12 41 41 H 1.09000 * 109.45633 * 181.25916 * 14 13 12 42 42 H 0.97001 * 119.99541 * 180.02562 * 20 19 17 43 43 H 1.09008 * 109.58247 * 246.15392 * 25 11 9 44 44 H 1.08996 * 109.59017 * 6.43526 * 25 11 9 45 45 H 1.09004 * 109.50527 * 302.32353 * 26 3 2 46 46 H 1.09002 * 109.50515 * 62.45521 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6699 2.0674 1.2543 5 6 2.2493 3.4844 1.2368 6 8 1.7596 4.1801 0.0871 7 6 2.0829 3.5433 -1.1520 8 1 3.1659 3.4929 -1.2637 9 6 1.4956 4.3335 -2.2931 10 8 0.7896 5.2932 -2.0660 11 7 1.7550 3.9737 -3.5657 12 6 2.6133 2.8173 -3.8567 13 6 3.7316 3.2529 -4.8017 14 6 3.1215 3.9109 -6.0414 15 6 2.3285 5.1516 -5.6244 16 1 2.9881 5.8479 -5.1065 17 6 1.7551 5.8177 -6.8485 18 1 0.6861 5.9325 -6.9500 19 6 2.5953 6.2809 -7.8387 20 7 2.0949 6.8627 -8.9067 21 14 4.4444 6.0820 -7.6633 22 1 4.8618 4.7874 -8.2591 23 1 5.1309 7.1951 -8.3669 24 1 4.8105 6.1055 -6.2243 25 6 1.1901 4.7345 -4.6886 26 6 1.5018 2.1270 -1.1587 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5854 2.1188 1.3505 33 1 2.0850 1.5150 2.0973 34 1 1.9444 4.0136 2.1396 35 1 3.3372 3.4324 1.1946 36 1 3.0460 2.4410 -2.9296 37 1 2.0224 2.0337 -4.3309 38 1 4.3156 2.3829 -5.1018 39 1 4.3785 3.9669 -4.2919 40 1 2.4561 3.2043 -6.5372 41 1 3.9175 4.2021 -6.7267 42 1 2.6860 7.1882 -9.6035 43 1 0.4805 4.1107 -5.2323 44 1 0.6819 5.6213 -4.3103 45 1 1.7942 1.6179 -2.0771 46 1 0.4146 2.1793 -1.1010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:59 Heat of formation + Delta-G solvation = -87.494026 kcal Electronic energy + Delta-G solvation = -25680.056987 eV Core-core repulsion = 22183.058133 eV Total energy + Delta-G solvation = -3496.998854 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79870 -40.22336 -38.56518 -37.23972 -35.49011 -33.78146 -32.74753 -31.91068 -31.59501 -28.25195 -26.89475 -26.71482 -25.27388 -23.86492 -23.22472 -21.75750 -20.98128 -20.11689 -18.91504 -18.49038 -17.73142 -17.25188 -16.95270 -16.40974 -16.31358 -16.00987 -15.75138 -15.41664 -15.32210 -14.96779 -14.87633 -14.79425 -14.36055 -14.15365 -13.85338 -13.69885 -13.43297 -13.11670 -12.96557 -12.80343 -12.66782 -12.47924 -12.30729 -12.10112 -11.94942 -11.87948 -11.57370 -11.50684 -11.25969 -11.08781 -10.77275 -10.68945 -10.64643 -9.62633 -9.42733 -8.31844 -6.37245 1.28226 1.36691 1.44434 1.46689 1.70477 2.31410 2.70678 2.89458 3.03221 3.48352 3.63624 3.83916 3.94019 3.96557 4.02741 4.09299 4.20782 4.22926 4.28645 4.32109 4.39764 4.43182 4.52081 4.57985 4.59165 4.68792 4.72278 4.78795 4.87631 4.89388 4.96081 4.98785 5.03129 5.08655 5.14214 5.30490 5.36259 5.39358 5.63649 5.72713 5.82558 5.96299 6.02234 6.24830 6.41960 6.69045 7.08272 7.28493 8.84922 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.003940 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.751622 B = 7104.113880 C = 7323.682805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.050 3.950 3 N -0.532 5.532 4 C 0.014 3.986 5 C 0.054 3.946 6 O -0.392 6.392 7 C 0.088 3.912 8 H 0.110 0.890 9 C 0.510 3.490 10 O -0.580 6.580 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.134 4.134 14 C -0.122 4.122 15 C 0.008 3.992 16 H 0.012 0.988 17 C -0.523 4.523 18 H 0.033 0.967 19 C 0.014 3.986 20 N -0.949 5.949 21 Si 0.955 3.045 22 H -0.254 1.254 23 H -0.302 1.302 24 H -0.253 1.253 25 C 0.139 3.861 26 C 0.027 3.973 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.038 0.962 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.038 0.962 42 H 0.267 0.733 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.117 0.883 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -19.702 20.834 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.077 4.077 3 N -0.256 5.256 4 C -0.114 4.114 5 C -0.022 4.022 6 O -0.311 6.311 7 C 0.026 3.974 8 H 0.127 0.873 9 C 0.298 3.702 10 O -0.459 6.459 11 N -0.334 5.334 12 C -0.022 4.022 13 C -0.172 4.172 14 C -0.159 4.159 15 C -0.012 4.012 16 H 0.031 0.969 17 C -0.562 4.562 18 H 0.051 0.949 19 C -0.184 4.184 20 N -0.589 5.589 21 Si 0.781 3.219 22 H -0.179 1.179 23 H -0.231 1.231 24 H -0.177 1.177 25 C 0.017 3.983 26 C -0.101 4.101 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.135 0.865 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.100 -18.985 20.788 28.611 hybrid contribution -0.600 0.757 -0.666 1.173 sum 4.501 -18.228 20.122 27.521 Atomic orbital electron populations 1.22433 0.98399 1.03078 1.01337 1.22300 0.92725 0.87985 1.04648 1.62537 1.58485 1.03099 1.01488 1.22898 0.99318 0.95581 0.93626 1.23029 0.99430 0.91904 0.87801 1.88102 1.78933 1.50198 1.13852 1.21876 1.00456 0.91341 0.83700 0.87308 1.20801 0.80674 0.84445 0.84294 1.90676 1.40150 1.30395 1.84687 1.48272 1.49440 1.31188 1.04514 1.22199 0.91782 0.86905 1.01283 1.21933 0.97801 1.01837 0.95605 1.21863 0.98808 0.97738 0.97509 1.19346 0.94188 0.94220 0.93431 0.96946 1.21214 0.93790 1.37912 1.03253 0.94871 1.25876 1.04036 0.94037 0.94410 1.70052 1.37444 1.41337 1.10032 0.85757 0.79503 0.77416 0.79199 1.17913 1.23054 1.17716 1.21354 0.96001 0.95216 0.85755 1.22821 0.97999 0.92135 0.97150 0.93723 0.90505 0.93086 0.89076 0.88584 0.94387 0.86699 0.86594 0.90903 0.86534 0.88717 0.87270 0.92450 0.91360 0.94372 0.92449 0.91361 0.92884 0.86534 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 9.20 71.98 0.66 -1.74 16 2 C 0.05 0.54 6.10 86.30 0.53 1.06 16 3 N -0.53 -7.95 4.94 -895.20 -4.42 -12.37 16 4 C 0.01 0.20 5.33 86.32 0.46 0.66 16 5 C 0.05 0.97 7.01 72.02 0.50 1.47 16 6 O -0.39 -11.32 10.01 -130.04 -1.30 -12.63 16 7 C 0.09 2.27 2.38 29.88 0.07 2.34 16 8 H 0.11 2.39 7.43 -2.39 -0.02 2.37 16 9 C 0.51 18.23 7.12 87.66 0.62 18.85 16 10 O -0.58 -27.01 15.92 15.91 0.25 -26.76 16 11 N -0.60 -20.07 2.98 -819.80 -2.44 -22.52 16 12 C 0.10 2.26 5.00 86.22 0.43 2.69 16 13 C -0.13 -3.51 6.06 30.53 0.19 -3.33 16 14 C -0.12 -4.58 4.66 30.62 0.14 -4.44 16 15 C 0.01 0.36 1.84 -11.48 -0.02 0.34 16 16 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 17 C -0.52 -30.17 9.14 25.60 0.23 -29.93 16 18 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 19 C 0.01 0.80 5.45 84.65 0.46 1.26 16 20 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 21 Si 0.95 44.79 24.39 68.60 1.67 46.46 16 22 H -0.25 -10.85 6.86 99.48 0.68 -10.17 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 25 C 0.14 5.89 5.66 86.35 0.49 6.38 16 26 C 0.03 0.54 3.99 86.31 0.34 0.88 16 27 H 0.04 0.70 6.42 -2.38 -0.02 0.69 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.69 6.61 -2.39 -0.02 0.68 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.73 8.11 -2.39 -0.02 0.71 16 32 H 0.04 0.64 6.59 -2.39 -0.02 0.62 16 33 H 0.11 1.04 8.12 -2.39 -0.02 1.02 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 1.89 4.63 -2.38 -0.01 1.88 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 41 H 0.04 1.54 3.27 -2.39 -0.01 1.53 16 42 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 43 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 44 H 0.05 2.57 7.00 -2.39 -0.02 2.56 16 45 H 0.12 1.82 5.46 -2.39 -0.01 1.81 16 46 H 0.04 0.87 6.40 -2.39 -0.02 0.86 16 Total: -1.00 -78.03 338.44 0.06 -77.96 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.89 Total: 12.83 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.11 Total: -3.51 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -6.56 Total: -94.36 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -1.05 Total: -39.38 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Total: -78.03 0.06 -77.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.531 kcal (2) G-P(sol) polarization free energy of solvation -78.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds