Wall clock time and date at job start Fri Apr 10 2020 17:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99783 * 2 1 4 4 C 1.53783 * 113.61443 * 149.99926 * 3 2 1 5 5 C 1.53784 * 87.08117 * 89.19707 * 4 3 2 6 6 C 1.50700 * 113.61087 * 139.98453 * 5 4 3 7 7 O 1.21282 * 120.00401 * 1.52749 * 6 5 4 8 8 N 1.34783 * 119.99708 * 181.53144 * 6 5 4 9 9 C 1.46498 * 120.00060 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47073 * 180.02562 * 9 8 6 11 11 C 1.53066 * 109.45184 * 64.79052 * 10 9 8 12 12 C 1.53202 * 109.29419 * 181.24225 * 11 10 9 13 13 N 1.46921 * 108.89095 * 305.57926 * 12 11 10 14 14 C 1.36936 * 120.62896 * 233.55861 * 13 12 11 15 15 H 1.08007 * 119.99922 * 151.82366 * 14 13 12 16 16 C 1.38810 * 119.99947 * 331.81879 * 14 13 12 17 17 N 1.31613 * 120.00273 * 343.08601 * 16 14 13 18 18 Si 1.86803 * 119.99828 * 163.07892 * 16 14 13 19 19 H 1.48507 * 109.47194 * 60.00090 * 18 16 14 20 20 H 1.48502 * 109.47096 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47239 * 300.00059 * 18 16 14 22 22 C 1.46925 * 118.73959 * 53.53708 * 13 12 11 23 23 C 1.53044 * 109.45728 * 185.00314 * 10 9 8 24 24 C 1.53780 * 87.17099 * 25.39251 * 5 4 3 25 25 H 1.08991 * 109.46963 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46935 * 299.99937 * 1 2 3 27 27 H 1.08999 * 109.46786 * 59.99783 * 1 2 3 28 28 H 1.08994 * 112.85027 * 18.80512 * 3 2 1 29 29 H 1.09002 * 113.61408 * 334.65005 * 4 3 2 30 30 H 1.08995 * 113.61921 * 203.75054 * 4 3 2 31 31 H 1.09005 * 113.61505 * 270.80027 * 5 4 3 32 32 H 0.97005 * 119.99865 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.46909 * 59.99763 * 9 8 6 34 34 H 1.08997 * 109.47153 * 300.00191 * 9 8 6 35 35 H 1.09002 * 109.45952 * 304.97025 * 10 9 8 36 36 H 1.09002 * 109.39095 * 61.36865 * 11 10 9 37 37 H 1.08998 * 109.62674 * 301.25905 * 11 10 9 38 38 H 1.08997 * 109.58441 * 185.72130 * 12 11 10 39 39 H 1.09001 * 109.58226 * 65.43722 * 12 11 10 40 40 H 0.96997 * 120.00271 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.59125 * 66.18147 * 22 13 12 42 42 H 1.09006 * 109.58704 * 186.46412 * 22 13 12 43 43 H 1.08997 * 109.49971 * 58.66135 * 23 10 9 44 44 H 1.09002 * 109.49614 * 298.56383 * 23 10 9 45 45 H 1.08996 * 113.61711 * 89.16029 * 24 5 4 46 46 H 1.09000 * 113.61341 * 220.06294 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3756 1.3720 0.7045 5 6 4.0063 1.0352 -0.6570 6 6 5.2713 1.8029 -0.9425 7 8 5.7107 2.5762 -0.1180 8 7 5.9144 1.6302 -2.1144 9 6 7.1438 2.3768 -2.3923 10 6 7.6672 1.9993 -3.7795 11 6 6.6639 2.4515 -4.8434 12 6 7.1766 2.0442 -6.2284 13 7 8.5335 2.5777 -6.4092 14 6 8.8425 3.3427 -7.5021 15 1 9.6257 4.0838 -7.4385 16 6 8.1493 3.1657 -8.6916 17 7 7.4443 2.0714 -8.8859 18 14 8.2168 4.4808 -10.0165 19 1 9.6243 4.6776 -10.4474 20 1 7.3976 4.0544 -11.1794 21 1 7.6818 5.7562 -9.4758 22 6 9.5525 2.2753 -5.3948 23 6 9.0152 2.6831 -4.0193 24 6 2.7536 1.6496 -1.3036 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.3138 2.0788 0.3238 29 1 3.5176 0.5950 1.4557 30 1 3.6305 2.3667 1.0698 31 1 4.1107 -0.0347 -0.8372 32 1 5.5631 1.0114 -2.7738 33 1 7.8949 2.1324 -1.6412 34 1 6.9342 3.4460 -2.3621 35 1 7.7930 0.9181 -3.8383 36 1 6.5544 3.5351 -4.8002 37 1 5.6983 1.9802 -4.6599 38 1 6.5186 2.4515 -6.9959 39 1 7.1982 0.9571 -6.3048 40 1 6.9602 1.9476 -9.7172 41 1 9.7683 1.2070 -5.4008 42 1 10.4630 2.8333 -5.6137 43 1 9.7211 2.3764 -3.2475 44 1 8.8855 3.7648 -3.9854 45 1 2.8381 2.7204 -1.4884 46 1 2.3942 1.0964 -2.1712 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599576652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:06 Heat of formation + Delta-G solvation = -51.220383 kcal Electronic energy + Delta-G solvation = -24180.844218 eV Core-core repulsion = 20685.418306 eV Total energy + Delta-G solvation = -3495.425911 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54038 -38.82760 -37.73331 -35.82867 -34.86979 -32.85641 -30.67980 -29.85201 -27.83524 -26.87494 -25.98580 -25.52505 -23.77953 -22.26303 -21.24183 -20.76757 -19.65857 -19.04970 -17.72846 -16.74873 -16.34480 -16.09837 -15.67590 -15.35549 -15.04489 -14.82923 -14.28802 -14.04557 -13.77915 -13.51837 -13.40317 -13.04230 -12.75779 -12.53275 -12.39169 -12.27751 -12.14027 -11.81564 -11.67586 -11.39140 -11.01864 -10.96596 -10.71371 -10.70143 -10.52280 -10.23768 -10.22490 -9.94304 -9.89441 -9.70026 -9.50446 -9.41465 -8.92497 -8.46648 -6.66610 -5.79156 -3.21372 2.65560 3.25628 3.34624 3.38122 3.43666 3.45285 4.20755 4.34291 4.47676 4.49652 4.65467 4.93687 5.03741 5.05432 5.09383 5.17690 5.27285 5.31521 5.37404 5.43441 5.47576 5.53138 5.59430 5.72111 5.80296 5.89068 5.93166 5.95161 6.08235 6.16304 6.29983 6.45327 6.55982 6.59149 6.68319 6.77148 6.82767 6.86796 6.99200 7.36034 7.59639 7.64556 7.79234 8.28616 8.45471 9.21711 9.85235 10.42093 11.29392 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.002890 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.583069 B = 9686.883264 C =10589.192472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.061 3.939 4 C -0.116 4.116 5 C -0.130 4.130 6 C 0.519 3.481 7 O -0.548 6.548 8 N -0.722 5.722 9 C 0.123 3.877 10 C -0.090 4.090 11 C -0.134 4.134 12 C 0.171 3.829 13 N -0.592 5.592 14 C -0.252 4.252 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.904 5.904 18 Si 0.902 3.098 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.146 3.854 23 C -0.124 4.124 24 C -0.142 4.142 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.402 0.598 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.016 0.984 40 H 0.254 0.746 41 H 0.017 0.983 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.573 -3.677 16.949 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.003 3.997 4 C -0.153 4.153 5 C -0.152 4.152 6 C 0.305 3.695 7 O -0.426 6.426 8 N -0.373 5.373 9 C -0.001 4.001 10 C -0.109 4.109 11 C -0.174 4.174 12 C 0.045 3.955 13 N -0.315 5.315 14 C -0.382 4.382 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.019 3.981 23 C -0.164 4.164 24 C -0.180 4.180 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.237 0.763 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.211 -3.332 17.360 20.932 hybrid contribution -0.343 0.474 -1.161 1.300 sum -11.554 -2.858 16.198 20.101 Atomic orbital electron populations 1.22826 0.80798 1.02873 1.00111 1.87884 1.19824 1.26500 1.94559 1.23117 0.94708 0.85257 0.96620 1.23096 0.92654 1.03911 0.95688 1.22700 0.92050 1.01115 0.99300 1.20499 0.85007 0.82476 0.81509 1.90669 1.67583 1.37727 1.46636 1.46120 1.27091 1.45551 1.18513 1.21549 0.85252 0.96152 0.97097 1.21308 0.96781 1.00373 0.92480 1.22254 0.96290 1.00750 0.98084 1.20754 0.86913 0.95682 0.92130 1.44037 1.04935 1.60064 1.22484 1.19151 1.19098 1.11525 0.88396 0.91782 1.25038 1.01154 0.96628 0.96854 1.70016 1.35211 1.24174 1.25435 0.86376 0.77638 0.81629 0.81166 1.20876 1.21646 1.21057 1.20886 0.92369 0.96999 0.87805 1.21979 0.95003 1.00379 0.99061 1.23414 0.94426 1.01826 0.98313 0.89512 0.93938 0.93821 0.90370 0.90153 0.87598 0.86609 0.76338 0.92054 0.91771 0.91363 0.92599 0.93558 0.89571 0.96557 0.93622 0.96540 0.92749 0.92957 0.92101 0.88745 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.37 -3.45 10.63 -35.23 -0.37 -3.82 16 3 C 0.06 0.53 4.38 -25.83 -0.11 0.41 16 4 C -0.12 -1.12 7.23 -25.92 -0.19 -1.31 16 5 C -0.13 -1.34 4.08 -90.96 -0.37 -1.71 16 6 C 0.52 6.93 7.35 -10.98 -0.08 6.85 16 7 O -0.55 -9.26 15.91 5.56 0.09 -9.17 16 8 N -0.72 -9.22 5.27 -60.29 -0.32 -9.53 16 9 C 0.12 1.77 5.07 -4.04 -0.02 1.74 16 10 C -0.09 -1.43 2.18 -90.56 -0.20 -1.63 16 11 C -0.13 -2.42 5.25 -26.59 -0.14 -2.56 16 12 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 13 N -0.59 -14.66 2.99 -172.32 -0.52 -15.18 16 14 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 15 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 16 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 17 N -0.90 -26.02 11.20 55.49 0.62 -25.40 16 18 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 23 C -0.12 -2.10 5.37 -26.61 -0.14 -2.24 16 24 C -0.14 -1.28 7.47 -25.83 -0.19 -1.47 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.11 1.10 7.45 -51.93 -0.39 0.72 16 31 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.40 4.47 7.64 -40.82 -0.31 4.16 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.73 7.15 -51.93 -0.37 0.36 16 38 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 1.11 7.93 -51.93 -0.41 0.69 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -31.60 364.84 -8.75 -40.35 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.09 Total: 1.45 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.62 Total: -0.78 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.21 Total: -50.11 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.29 Total: -12.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.60 -8.75 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599576652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.873 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds