Wall clock time and date at job start Fri Apr 10 2020 17:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47268 * 2 1 4 4 O 1.42902 * 109.47341 * 120.00222 * 2 1 3 5 5 C 1.42892 * 113.99939 * 270.00064 * 4 2 1 6 6 C 1.52998 * 109.47330 * 180.02562 * 5 4 2 7 7 C 1.52997 * 117.52395 * 116.28219 * 6 5 4 8 8 C 1.52994 * 60.00141 * 107.48221 * 7 6 5 9 9 C 1.50700 * 109.46947 * 239.99887 * 2 1 3 10 10 O 1.21277 * 120.00487 * 245.00001 * 9 2 1 11 11 N 1.34775 * 119.99975 * 65.00066 * 9 2 1 12 12 C 1.46505 * 120.00416 * 179.97438 * 11 9 2 13 13 C 1.53042 * 109.45739 * 275.06967 * 12 11 9 14 14 C 1.53198 * 109.30863 * 178.61046 * 13 12 11 15 15 N 1.46929 * 108.77454 * 54.63563 * 14 13 12 16 16 C 1.36932 * 120.62743 * 126.41250 * 15 14 13 17 17 H 1.07998 * 120.00614 * 331.81912 * 16 15 14 18 18 C 1.38816 * 119.99921 * 151.83007 * 16 15 14 19 19 N 1.31619 * 119.99674 * 343.06726 * 18 16 15 20 20 Si 1.86802 * 120.00323 * 163.07314 * 18 16 15 21 21 H 1.48499 * 109.47124 * 89.99326 * 20 18 16 22 22 H 1.48497 * 109.47176 * 209.99531 * 20 18 16 23 23 H 1.48497 * 109.46923 * 329.99512 * 20 18 16 24 24 C 1.46923 * 118.73652 * 306.39076 * 15 14 13 25 25 C 1.53033 * 109.46042 * 155.00045 * 12 11 9 26 26 H 1.08996 * 109.46807 * 60.00127 * 1 2 3 27 27 H 1.09002 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46388 * 299.99413 * 1 2 3 29 29 H 1.08999 * 109.47517 * 59.99834 * 5 4 2 30 30 H 1.09005 * 109.47210 * 299.99655 * 5 4 2 31 31 H 1.09005 * 115.54894 * 330.57501 * 6 5 4 32 32 H 1.08996 * 117.49886 * 214.97492 * 7 6 5 33 33 H 1.09007 * 117.49640 * 359.97438 * 7 6 5 34 34 H 1.09008 * 117.50174 * 252.51090 * 8 7 6 35 35 H 1.09001 * 117.50162 * 107.49466 * 8 7 6 36 36 H 0.97010 * 119.99991 * 359.97438 * 11 9 2 37 37 H 1.08997 * 109.45591 * 35.02498 * 12 11 9 38 38 H 1.09001 * 109.49834 * 298.56135 * 13 12 11 39 39 H 1.08999 * 109.49450 * 58.66132 * 13 12 11 40 40 H 1.08993 * 109.58526 * 294.84977 * 14 13 12 41 41 H 1.08999 * 109.69939 * 174.48875 * 14 13 12 42 42 H 0.97004 * 119.99820 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.58517 * 293.81807 * 24 15 14 44 44 H 1.09004 * 109.70228 * 173.46647 * 24 15 14 45 45 H 1.09007 * 109.49961 * 301.33502 * 25 12 11 46 46 H 1.08994 * 109.50041 * 61.40333 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1828 2.2940 6 6 2.7092 -0.6407 3.4787 7 6 4.1070 -0.3217 4.0129 8 6 2.8701 0.0766 4.8206 9 6 2.0323 -0.7104 -1.2305 10 8 2.6530 -1.7467 -1.1216 11 7 1.7919 -0.1942 -2.4520 12 6 2.2806 -0.8845 -3.6482 13 6 3.7294 -0.4721 -3.9186 14 6 4.2483 -1.2221 -5.1496 15 7 3.3321 -0.9790 -6.2723 16 6 3.8033 -0.5036 -7.4669 17 1 4.6923 0.1091 -7.4915 18 6 3.1380 -0.8089 -8.6464 19 7 2.2744 -1.8016 -8.6767 20 14 3.4687 0.1890 -10.1905 21 1 4.5842 -0.4301 -10.9505 22 1 2.2476 0.2132 -11.0352 23 1 3.8372 1.5772 -9.8133 24 6 1.9010 -1.2563 -6.0889 25 6 1.4085 -0.5060 -4.8474 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.2539 0.6546 2.5588 30 1 2.9321 0.9512 2.0450 31 1 2.3878 -1.6820 3.5001 32 1 4.7052 -1.1531 4.3856 33 1 4.6645 0.4748 3.5200 34 1 2.6137 1.1354 4.8593 35 1 2.6546 -0.4928 5.7247 36 1 1.2952 0.6345 -2.5392 37 1 2.2334 -1.9620 -3.4904 38 1 3.7741 0.6016 -4.1011 39 1 4.3457 -0.7208 -3.0546 40 1 4.2895 -2.2901 -4.9363 41 1 5.2445 -0.8619 -5.4064 42 1 1.8098 -2.0153 -9.5010 43 1 1.7508 -2.3272 -5.9522 44 1 1.3461 -0.9183 -6.9641 45 1 0.3728 -0.7788 -4.6445 46 1 1.4745 0.5680 -5.0208 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609330707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:41 Heat of formation + Delta-G solvation = -43.238676 kcal Electronic energy + Delta-G solvation = -24181.968839 eV Core-core repulsion = 20686.889041 eV Total energy + Delta-G solvation = -3495.079798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02350 -38.55757 -37.39572 -36.56142 -34.41518 -32.51225 -31.39234 -30.05349 -29.23130 -27.38296 -25.34123 -23.99246 -22.71557 -22.24854 -21.80203 -21.10035 -20.10971 -19.26244 -17.41156 -17.32054 -16.53261 -16.01438 -15.85759 -15.18903 -14.82203 -14.55477 -14.42613 -13.91122 -13.77405 -13.54494 -13.24287 -13.04320 -12.79962 -12.60754 -12.46477 -12.36282 -11.90711 -11.78268 -11.46109 -11.29455 -11.12502 -10.85187 -10.79683 -10.71014 -10.60622 -10.49043 -10.27775 -10.04022 -9.95509 -9.79808 -9.61890 -9.28794 -8.70719 -8.45710 -6.68152 -5.79764 -3.21791 2.76075 2.82319 3.36875 3.43021 3.44011 3.46141 3.78141 4.45544 4.49312 4.53534 4.60592 4.70740 4.75156 4.86898 4.98192 5.10680 5.27218 5.30630 5.32389 5.34194 5.40374 5.47516 5.51991 5.56177 5.59745 5.76169 5.85194 5.88227 5.88489 6.07811 6.27349 6.33775 6.52596 6.56703 6.59428 6.80015 6.84407 6.96518 7.00723 7.31433 7.59483 7.72511 7.79815 8.41262 8.44593 9.20635 9.83886 10.41170 11.29242 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.037851 B = 0.002610 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.572691 B =10726.763977 C =11042.214436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.083 0.917 4 O -0.353 6.353 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.176 4.176 8 C -0.175 4.175 9 C 0.510 3.490 10 O -0.520 6.520 11 N -0.722 5.722 12 C 0.152 3.848 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.174 3.826 25 C -0.146 4.146 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.395 0.605 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 7.475 22.351 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 H 0.101 0.899 4 O -0.271 6.271 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.213 4.213 8 C -0.212 4.212 9 C 0.294 3.706 10 O -0.394 6.394 11 N -0.374 5.374 12 C 0.049 3.951 13 C -0.179 4.179 14 C 0.020 3.980 15 N -0.316 5.316 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.186 4.186 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.228 0.772 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.621 6.438 22.283 23.475 hybrid contribution -0.190 1.183 -0.826 1.455 sum -3.810 7.621 21.457 23.087 Atomic orbital electron populations 1.22228 0.93626 1.03940 1.02953 1.21922 0.95034 0.96200 0.85936 0.89917 1.88056 1.86473 1.33857 1.18708 1.22103 0.99106 0.91993 0.85393 1.22106 1.00547 1.01140 0.93230 1.23074 0.90862 1.03649 1.03744 1.22979 1.02677 1.01026 0.94507 1.20285 0.80215 0.85767 0.84297 1.90724 1.39284 1.23104 1.86334 1.46290 1.57632 1.27700 1.05827 1.21054 0.94217 0.97230 0.82606 1.22378 0.95401 1.00923 0.99244 1.20875 0.93786 0.96140 0.87161 1.44092 1.01679 1.76192 1.09596 1.19174 1.11280 1.24192 0.83487 0.91682 1.25061 1.00262 0.96902 0.97497 1.70027 1.30546 1.27490 1.26706 0.86302 0.77254 0.80081 0.83167 1.21381 1.21571 1.20526 1.20740 0.85144 0.95479 0.93871 1.22534 0.97590 1.01791 0.96659 0.90818 0.90976 0.91434 0.92782 0.93101 0.86665 0.88498 0.88629 0.88719 0.88390 0.77198 0.89998 0.92340 0.92743 0.96157 0.92544 0.93600 0.96092 0.89018 0.92714 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.07 0.79 3.13 -27.88 -0.09 0.71 16 3 H 0.08 0.72 7.79 -51.93 -0.40 0.31 16 4 O -0.35 -4.60 9.53 -55.09 -0.52 -5.13 16 5 C 0.09 0.85 6.03 37.16 0.22 1.07 16 6 C -0.15 -1.37 6.06 -90.62 -0.55 -1.91 16 7 C -0.18 -1.40 10.18 -26.74 -0.27 -1.67 16 8 C -0.17 -1.17 10.25 -26.73 -0.27 -1.45 16 9 C 0.51 7.76 7.14 -10.99 -0.08 7.69 16 10 O -0.52 -10.45 16.17 -14.30 -0.23 -10.68 16 11 N -0.72 -10.08 5.04 -53.77 -0.27 -10.35 16 12 C 0.15 2.67 2.42 -67.89 -0.16 2.50 16 13 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 14 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 15 N -0.59 -14.86 2.99 -172.32 -0.52 -15.38 16 16 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 19 N -0.90 -26.07 11.19 55.49 0.62 -25.44 16 20 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 25 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 26 H 0.07 0.53 7.92 -51.93 -0.41 0.12 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 29 H 0.05 0.40 7.87 -51.93 -0.41 0.00 16 30 H 0.05 0.43 7.82 -51.93 -0.41 0.03 16 31 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 34 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.39 4.23 8.38 -40.82 -0.34 3.89 16 37 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 45 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -32.75 371.05 -9.90 -42.65 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.12 Total: 1.80 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.42 Total: 0.46 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.17 Total: -51.18 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.76 Total: -15.80 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.75 -9.90 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.587 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds