Wall clock time and date at job start Fri Apr 10 2020 17:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47268 * 2 1 4 4 O 1.42902 * 109.47341 * 120.00222 * 2 1 3 5 5 C 1.42892 * 113.99939 * 270.00064 * 4 2 1 6 6 C 1.52998 * 109.47330 * 180.02562 * 5 4 2 7 7 C 1.52997 * 117.52395 * 116.28219 * 6 5 4 8 8 C 1.52994 * 60.00141 * 107.48221 * 7 6 5 9 9 C 1.50700 * 109.46947 * 239.99887 * 2 1 3 10 10 O 1.21277 * 120.00487 * 245.00001 * 9 2 1 11 11 N 1.34775 * 119.99975 * 65.00066 * 9 2 1 12 12 C 1.46505 * 120.00416 * 179.97438 * 11 9 2 13 13 C 1.53042 * 109.45739 * 275.06967 * 12 11 9 14 14 C 1.53198 * 109.30863 * 178.61046 * 13 12 11 15 15 N 1.46929 * 108.77454 * 54.63563 * 14 13 12 16 16 C 1.36932 * 120.62743 * 126.41250 * 15 14 13 17 17 H 1.07998 * 120.00614 * 331.81912 * 16 15 14 18 18 C 1.38816 * 119.99921 * 151.83007 * 16 15 14 19 19 N 1.31619 * 119.99674 * 343.06726 * 18 16 15 20 20 Si 1.86802 * 120.00323 * 163.07314 * 18 16 15 21 21 H 1.48499 * 109.47124 * 89.99326 * 20 18 16 22 22 H 1.48497 * 109.47176 * 209.99531 * 20 18 16 23 23 H 1.48497 * 109.46923 * 329.99512 * 20 18 16 24 24 C 1.46923 * 118.73652 * 306.39076 * 15 14 13 25 25 C 1.53033 * 109.46042 * 155.00045 * 12 11 9 26 26 H 1.08996 * 109.46807 * 60.00127 * 1 2 3 27 27 H 1.09002 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46388 * 299.99413 * 1 2 3 29 29 H 1.08999 * 109.47517 * 59.99834 * 5 4 2 30 30 H 1.09005 * 109.47210 * 299.99655 * 5 4 2 31 31 H 1.09005 * 115.54894 * 330.57501 * 6 5 4 32 32 H 1.08996 * 117.49886 * 214.97492 * 7 6 5 33 33 H 1.09007 * 117.49640 * 359.97438 * 7 6 5 34 34 H 1.09008 * 117.50174 * 252.51090 * 8 7 6 35 35 H 1.09001 * 117.50162 * 107.49466 * 8 7 6 36 36 H 0.97010 * 119.99991 * 359.97438 * 11 9 2 37 37 H 1.08997 * 109.45591 * 35.02498 * 12 11 9 38 38 H 1.09001 * 109.49834 * 298.56135 * 13 12 11 39 39 H 1.08999 * 109.49450 * 58.66132 * 13 12 11 40 40 H 1.08993 * 109.58526 * 294.84977 * 14 13 12 41 41 H 1.08999 * 109.69939 * 174.48875 * 14 13 12 42 42 H 0.97004 * 119.99820 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.58517 * 293.81807 * 24 15 14 44 44 H 1.09004 * 109.70228 * 173.46647 * 24 15 14 45 45 H 1.09007 * 109.49961 * 301.33502 * 25 12 11 46 46 H 1.08994 * 109.50041 * 61.40333 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1828 2.2940 6 6 2.7092 -0.6407 3.4787 7 6 4.1070 -0.3217 4.0129 8 6 2.8701 0.0766 4.8206 9 6 2.0323 -0.7104 -1.2305 10 8 2.6530 -1.7467 -1.1216 11 7 1.7919 -0.1942 -2.4520 12 6 2.2806 -0.8845 -3.6482 13 6 3.7294 -0.4721 -3.9186 14 6 4.2483 -1.2221 -5.1496 15 7 3.3321 -0.9790 -6.2723 16 6 3.8033 -0.5036 -7.4669 17 1 4.6923 0.1091 -7.4915 18 6 3.1380 -0.8089 -8.6464 19 7 2.2744 -1.8016 -8.6767 20 14 3.4687 0.1890 -10.1905 21 1 4.5842 -0.4301 -10.9505 22 1 2.2476 0.2132 -11.0352 23 1 3.8372 1.5772 -9.8133 24 6 1.9010 -1.2563 -6.0889 25 6 1.4085 -0.5060 -4.8474 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.2539 0.6546 2.5588 30 1 2.9321 0.9512 2.0450 31 1 2.3878 -1.6820 3.5001 32 1 4.7052 -1.1531 4.3856 33 1 4.6645 0.4748 3.5200 34 1 2.6137 1.1354 4.8593 35 1 2.6546 -0.4928 5.7247 36 1 1.2952 0.6345 -2.5392 37 1 2.2334 -1.9620 -3.4904 38 1 3.7741 0.6016 -4.1011 39 1 4.3457 -0.7208 -3.0546 40 1 4.2895 -2.2901 -4.9363 41 1 5.2445 -0.8619 -5.4064 42 1 1.8098 -2.0153 -9.5010 43 1 1.7508 -2.3272 -5.9522 44 1 1.3461 -0.9183 -6.9641 45 1 0.3728 -0.7788 -4.6445 46 1 1.4745 0.5680 -5.0208 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609330707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:40 Heat of formation + Delta-G solvation = -63.522979 kcal Electronic energy + Delta-G solvation = -24182.848433 eV Core-core repulsion = 20686.889041 eV Total energy + Delta-G solvation = -3495.959392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21060 -39.55601 -38.75959 -37.43248 -36.01030 -34.10702 -32.65097 -31.68422 -30.86602 -28.06030 -27.07474 -25.21756 -23.92681 -23.39955 -23.24946 -21.80802 -21.34753 -20.86234 -18.93951 -18.25635 -17.98669 -17.08248 -16.79372 -16.75077 -16.12567 -15.74406 -15.54119 -15.36302 -15.21348 -14.84598 -14.75397 -14.29238 -14.10181 -13.90960 -13.59086 -13.23505 -13.20948 -13.02009 -12.63919 -12.60716 -12.52041 -12.38218 -12.22451 -12.03555 -11.99256 -11.88801 -11.56947 -11.41071 -11.36357 -11.28105 -10.82961 -10.56415 -10.36087 -10.03190 -8.71631 -7.88311 -5.34240 1.48568 1.49525 1.59295 1.59820 1.82969 2.51882 2.70701 3.01125 3.27807 3.60529 3.68787 3.85025 3.89458 3.92821 3.96580 4.00909 4.09462 4.16671 4.31555 4.34066 4.44893 4.47642 4.63336 4.67999 4.72226 4.77268 4.79994 4.81110 4.84888 5.00746 5.01376 5.03560 5.14163 5.21208 5.21536 5.24604 5.27782 5.45886 5.52140 5.64070 5.70486 6.13043 6.38329 6.61689 7.13797 7.27428 7.82942 8.36354 9.18948 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.037851 B = 0.002610 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.572691 B =10726.763977 C =11042.214436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 H 0.117 0.883 4 O -0.389 6.389 5 C 0.088 3.912 6 C -0.175 4.175 7 C -0.187 4.187 8 C -0.153 4.153 9 C 0.506 3.494 10 O -0.577 6.577 11 N -0.705 5.705 12 C 0.162 3.838 13 C -0.124 4.124 14 C 0.144 3.856 15 N -0.609 5.609 16 C -0.264 4.264 17 H 0.068 0.932 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.268 1.268 24 C 0.178 3.822 25 C -0.127 4.127 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.416 0.584 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.004 0.996 41 H 0.058 0.942 42 H 0.251 0.749 43 H -0.008 1.008 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.779 10.480 23.832 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.135 0.865 4 O -0.308 6.308 5 C 0.012 3.988 6 C -0.193 4.193 7 C -0.224 4.224 8 C -0.189 4.189 9 C 0.293 3.707 10 O -0.455 6.455 11 N -0.358 5.358 12 C 0.057 3.943 13 C -0.164 4.164 14 C 0.018 3.982 15 N -0.332 5.332 16 C -0.394 4.394 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.193 1.193 24 C 0.051 3.949 25 C -0.166 4.166 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.253 0.747 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.022 0.978 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.010 0.990 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.383 9.494 23.796 25.992 hybrid contribution 0.098 0.171 -1.237 1.253 sum -4.285 9.665 22.559 24.913 Atomic orbital electron populations 1.22236 0.91452 1.03323 1.05192 1.22003 0.96439 0.96640 0.83452 0.86523 1.88025 1.86895 1.35893 1.19944 1.22292 1.00533 0.91710 0.84233 1.22144 1.01596 1.00756 0.94839 1.23159 0.90951 1.03890 1.04399 1.23071 1.00571 1.01792 0.93503 1.21157 0.78952 0.85099 0.85527 1.90704 1.41906 1.25761 1.87151 1.45961 1.57289 1.28079 1.04499 1.20645 0.93732 0.96015 0.83870 1.22167 0.95915 1.00929 0.97354 1.20959 0.93755 0.95728 0.87769 1.44355 1.02720 1.76311 1.09854 1.19511 1.11366 1.23968 0.84544 0.91455 1.25847 1.00424 0.97884 1.00449 1.70190 1.31722 1.29053 1.27240 0.85241 0.76732 0.78975 0.79256 1.21431 1.21712 1.19261 1.20577 0.84510 0.94429 0.95351 1.22247 0.98648 1.01639 0.94094 0.88791 0.93025 0.88984 0.90505 0.92204 0.88491 0.88699 0.88308 0.87044 0.87466 0.74684 0.92917 0.91074 0.92585 0.97835 0.92336 0.93988 0.99005 0.91682 0.90293 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 71.98 0.68 -1.66 16 2 C 0.08 1.50 3.13 29.85 0.09 1.59 16 3 H 0.12 1.52 7.79 -2.39 -0.02 1.51 16 4 O -0.39 -9.64 9.53 -129.99 -1.24 -10.88 16 5 C 0.09 1.45 6.03 71.98 0.43 1.89 16 6 C -0.18 -2.96 6.06 -10.80 -0.07 -3.03 16 7 C -0.19 -2.77 10.18 30.59 0.31 -2.45 16 8 C -0.15 -1.70 10.25 30.59 0.31 -1.39 16 9 C 0.51 14.74 7.14 87.66 0.63 15.37 16 10 O -0.58 -23.49 16.17 15.97 0.26 -23.23 16 11 N -0.71 -18.11 5.04 -442.41 -2.23 -20.34 16 12 C 0.16 5.55 2.42 45.02 0.11 5.66 16 13 C -0.12 -4.48 5.65 30.67 0.17 -4.31 16 14 C 0.14 6.37 6.52 86.36 0.56 6.93 16 15 N -0.61 -30.97 2.99 -699.09 -2.09 -33.06 16 16 C -0.26 -14.51 9.58 84.04 0.81 -13.71 16 17 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 18 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 19 N -0.94 -55.31 11.19 21.65 0.24 -55.07 16 20 Si 0.97 44.37 29.59 68.60 2.03 46.40 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 C 0.18 8.50 5.30 86.36 0.46 8.96 16 25 C -0.13 -4.43 5.55 30.67 0.17 -4.26 16 26 H 0.09 0.95 7.92 -2.39 -0.02 0.93 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 0.89 7.87 -2.39 -0.02 0.87 16 29 H 0.08 0.88 7.87 -2.39 -0.02 0.86 16 30 H 0.06 0.86 7.82 -2.38 -0.02 0.84 16 31 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.37 8.03 -2.38 -0.02 1.35 16 34 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.42 7.32 8.38 -92.70 -0.78 6.54 16 37 H 0.05 2.15 7.58 -2.39 -0.02 2.14 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.06 3.46 6.07 -2.38 -0.01 3.44 16 45 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -73.99 371.05 2.23 -71.76 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.17 Total: 17.23 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 5.09 Total: 7.19 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -4.08 Total: -108.47 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.98 Total: -34.11 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -73.99 2.23 -71.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.233 kcal (2) G-P(sol) polarization free energy of solvation -73.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds