Wall clock time and date at job start Fri Apr 10 2020 17:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99997 * 2 1 4 4 H 1.48504 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47302 * 299.99688 * 3 2 1 6 6 H 1.48494 * 109.47325 * 60.00208 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46875 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47196 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47463 * 304.99862 * 11 10 9 13 13 N 1.46899 * 109.47136 * 64.99961 * 11 10 9 14 14 C 1.50701 * 109.47441 * 185.00048 * 11 10 9 15 15 O 1.21282 * 119.99833 * 260.00365 * 14 11 10 16 16 N 1.34774 * 120.00229 * 79.99524 * 14 11 10 17 17 C 1.46497 * 120.00159 * 175.01720 * 16 14 11 18 18 C 1.50705 * 109.46829 * 304.86533 * 17 16 14 19 19 N 1.34775 * 120.00157 * 323.89055 * 18 17 16 20 20 O 1.21281 * 119.99952 * 144.16521 * 18 17 16 21 21 C 1.52993 * 109.47506 * 64.86383 * 17 16 14 22 22 C 1.53004 * 109.46807 * 60.00279 * 21 17 16 23 23 C 1.53001 * 109.47207 * 59.99853 * 22 21 17 24 24 C 1.52995 * 109.47046 * 300.00010 * 23 22 21 25 25 C 1.53000 * 109.47190 * 60.00472 * 24 23 22 26 26 H 0.96998 * 119.99979 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47374 * 60.00006 * 9 7 2 28 28 H 1.08999 * 109.47091 * 299.99096 * 9 7 2 29 29 H 1.09000 * 109.47651 * 59.99932 * 10 9 7 30 30 H 1.09003 * 109.47447 * 300.00066 * 10 9 7 31 31 H 1.00899 * 110.99855 * 296.04306 * 13 11 10 32 32 H 1.00900 * 111.00258 * 59.99951 * 13 11 10 33 33 H 0.97002 * 119.99721 * 355.01420 * 16 14 11 34 34 H 0.97001 * 120.00226 * 175.26888 * 19 18 17 35 35 H 0.97002 * 120.00109 * 355.26259 * 19 18 17 36 36 H 1.08997 * 109.47236 * 179.97438 * 21 17 16 37 37 H 1.09000 * 109.47119 * 300.00320 * 21 17 16 38 38 H 1.09002 * 109.46733 * 300.00215 * 22 21 17 39 39 H 1.09004 * 109.47104 * 180.02562 * 22 21 17 40 40 H 1.09006 * 109.46694 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.46597 * 60.00130 * 23 22 21 42 42 H 1.08996 * 109.47106 * 299.99679 * 24 23 22 43 43 H 1.09000 * 109.46808 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.47404 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47638 * 59.99155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 1 0.7884 -5.0069 0.8432 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7863 -6.7536 -0.8608 16 7 2.9582 -6.4586 1.3312 17 6 3.8193 -7.6357 1.4696 18 6 3.1027 -8.8480 0.9329 19 7 1.7718 -8.9746 1.1034 20 8 3.7246 -9.7121 0.3519 21 6 5.1123 -7.4172 0.6817 22 6 5.8398 -6.1863 1.2266 23 6 6.1732 -6.4035 2.7039 24 6 4.8800 -6.6220 3.4918 25 6 4.1527 -7.8529 2.9470 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8719 -3.6044 0.8905 30 1 2.8719 -3.6044 -0.8894 31 1 0.0232 -4.4009 -1.3299 32 1 1.3476 -5.1034 -2.0500 33 1 2.7503 -5.9157 2.1078 34 1 1.2998 -9.7195 0.6994 35 1 1.2860 -8.3209 1.6302 36 1 5.7532 -8.2928 0.7850 37 1 4.8748 -7.2625 -0.3708 38 1 5.1991 -5.3105 1.1236 39 1 6.7608 -6.0304 0.6649 40 1 6.6918 -5.5267 3.0920 41 1 6.8138 -7.2793 2.8068 42 1 4.2395 -5.7461 3.3889 43 1 5.1177 -6.7771 4.5442 44 1 3.2311 -8.0083 3.5080 45 1 4.7934 -8.7287 3.0499 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424089131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:07 Heat of formation + Delta-G solvation = -105.474095 kcal Electronic energy + Delta-G solvation = -25675.176170 eV Core-core repulsion = 22111.971730 eV Total energy + Delta-G solvation = -3563.204440 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16870 -38.84436 -37.70049 -35.51290 -34.21925 -33.13395 -32.89030 -30.99476 -30.20114 -29.91770 -26.49971 -24.26291 -23.70591 -22.89996 -21.12337 -20.70379 -19.97535 -19.11019 -17.79514 -17.48822 -16.86701 -16.27980 -15.84375 -15.02221 -14.95621 -14.69661 -14.49825 -14.38548 -14.18059 -13.95596 -13.86726 -13.23758 -13.03000 -12.87441 -12.52186 -12.39143 -12.30588 -12.16757 -11.75003 -11.33690 -11.13622 -10.98853 -10.86967 -10.72422 -10.69779 -10.49200 -10.05302 -10.02771 -9.88230 -9.65798 -9.31521 -9.22392 -9.02044 -8.48616 -8.24668 -6.12980 -4.16080 2.51488 2.82148 3.12876 3.23114 3.31578 3.35122 3.47598 4.35846 4.40694 4.48063 4.57552 4.88520 4.93846 5.05921 5.09617 5.13374 5.23618 5.25645 5.28026 5.38547 5.48894 5.56292 5.68912 5.70057 5.83691 5.92680 5.95623 6.09066 6.18341 6.24662 6.34773 6.42383 6.46111 6.74874 6.81591 7.26255 7.36525 7.46477 7.54803 7.61035 7.83297 7.84654 8.22892 8.26295 8.37485 8.90139 9.49316 10.97925 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.004069 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.585910 B = 6879.288064 C = 7780.599484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.096 0.904 13 N -0.830 5.830 14 C 0.524 3.476 15 O -0.520 6.520 16 N -0.728 5.728 17 C 0.167 3.833 18 C 0.531 3.469 19 N -0.848 5.848 20 O -0.540 6.540 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.118 4.118 26 H 0.261 0.739 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.354 0.646 32 H 0.346 0.654 33 H 0.404 0.596 34 H 0.400 0.600 35 H 0.400 0.600 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 -14.488 8.714 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.039 4.039 12 H 0.114 0.886 13 N -0.362 5.362 14 C 0.311 3.689 15 O -0.394 6.394 16 N -0.386 5.386 17 C 0.077 3.923 18 C 0.314 3.686 19 N -0.410 5.410 20 O -0.416 6.416 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.156 4.156 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.240 0.760 34 H 0.230 0.770 35 H 0.228 0.772 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.429 -16.017 7.901 18.982 hybrid contribution 0.158 2.307 0.261 2.327 sum 6.587 -13.710 8.162 17.262 Atomic orbital electron populations 1.69954 1.06025 1.26705 1.50503 1.25003 0.94851 0.99308 0.95092 0.86543 0.80130 0.83710 0.77684 1.19743 1.20940 1.20934 1.21208 0.93045 0.90858 1.51040 0.92673 1.19101 0.93697 0.91145 0.97323 1.22382 0.99862 0.93936 1.01502 1.21475 0.94560 0.92239 0.95668 0.88618 1.58747 1.18439 1.55859 1.03177 1.20995 0.80918 0.84581 0.82413 1.90675 1.59150 1.52863 1.36725 1.46227 1.51634 1.29296 1.11410 1.20444 0.91192 0.83616 0.97030 1.20581 0.82596 0.87244 0.78188 1.43732 1.08996 1.31797 1.56485 1.90712 1.66456 1.42591 1.41801 1.21751 0.93712 0.98809 1.01103 1.21520 1.00383 0.98245 0.95430 1.21563 0.97018 1.01769 0.95452 1.21535 0.97190 0.97350 0.99521 1.21791 1.01636 1.00275 0.91895 0.92921 0.96440 0.96354 0.92562 0.92660 0.83027 0.84092 0.75957 0.76951 0.77215 0.90550 0.89560 0.91376 0.91683 0.91675 0.91951 0.91313 0.91170 0.90827 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.91 9.11 -34.44 -0.31 -14.22 16 8 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.43 16 10 C -0.14 -2.50 4.78 -26.73 -0.13 -2.63 16 11 C 0.08 1.16 3.21 -68.87 -0.22 0.94 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 13 N -0.83 -13.36 8.94 -5.65 -0.05 -13.41 16 14 C 0.52 7.69 6.23 -10.99 -0.07 7.62 16 15 O -0.52 -9.45 13.53 5.56 0.08 -9.38 16 16 N -0.73 -8.05 3.47 -48.68 -0.17 -8.21 16 17 C 0.17 1.89 0.58 -132.97 -0.08 1.82 16 18 C 0.53 7.24 5.45 -10.98 -0.06 7.18 16 19 N -0.85 -8.95 8.45 31.22 0.26 -8.69 16 20 O -0.54 -9.47 16.92 5.56 0.09 -9.37 16 21 C -0.12 -1.49 4.11 -26.73 -0.11 -1.60 16 22 C -0.12 -1.31 5.77 -26.73 -0.15 -1.46 16 23 C -0.12 -1.05 5.92 -26.73 -0.16 -1.20 16 24 C -0.12 -0.89 5.75 -26.73 -0.15 -1.05 16 25 C -0.12 -0.97 4.78 -26.73 -0.13 -1.10 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.02 0.42 6.87 -51.93 -0.36 0.07 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.35 5.79 7.55 -39.29 -0.30 5.49 16 32 H 0.35 5.81 8.58 -39.29 -0.34 5.47 16 33 H 0.40 3.61 7.17 -40.82 -0.29 3.31 16 34 H 0.40 3.92 8.93 -40.82 -0.36 3.56 16 35 H 0.40 3.37 8.31 -40.82 -0.34 3.03 16 36 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 37 H 0.09 1.41 6.36 -51.93 -0.33 1.08 16 38 H 0.07 0.84 7.60 -51.93 -0.39 0.45 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.52 6.77 -51.93 -0.35 0.17 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -32.85 354.83 -7.77 -40.62 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -7.24 Total: 15.72 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.80 Total: -3.75 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.78 Total: -55.01 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.85 -7.77 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424089131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.857 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds