Wall clock time and date at job start Fri Apr 10 2020 17:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99997 * 2 1 4 4 H 1.48504 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47302 * 299.99688 * 3 2 1 6 6 H 1.48494 * 109.47325 * 60.00208 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46875 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47196 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47463 * 304.99862 * 11 10 9 13 13 N 1.46899 * 109.47136 * 64.99961 * 11 10 9 14 14 C 1.50701 * 109.47441 * 185.00048 * 11 10 9 15 15 O 1.21282 * 119.99833 * 260.00365 * 14 11 10 16 16 N 1.34774 * 120.00229 * 79.99524 * 14 11 10 17 17 C 1.46497 * 120.00159 * 175.01720 * 16 14 11 18 18 C 1.50705 * 109.46829 * 304.86533 * 17 16 14 19 19 N 1.34775 * 120.00157 * 323.89055 * 18 17 16 20 20 O 1.21281 * 119.99952 * 144.16521 * 18 17 16 21 21 C 1.52993 * 109.47506 * 64.86383 * 17 16 14 22 22 C 1.53004 * 109.46807 * 60.00279 * 21 17 16 23 23 C 1.53001 * 109.47207 * 59.99853 * 22 21 17 24 24 C 1.52995 * 109.47046 * 300.00010 * 23 22 21 25 25 C 1.53000 * 109.47190 * 60.00472 * 24 23 22 26 26 H 0.96998 * 119.99979 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47374 * 60.00006 * 9 7 2 28 28 H 1.08999 * 109.47091 * 299.99096 * 9 7 2 29 29 H 1.09000 * 109.47651 * 59.99932 * 10 9 7 30 30 H 1.09003 * 109.47447 * 300.00066 * 10 9 7 31 31 H 1.00899 * 110.99855 * 296.04306 * 13 11 10 32 32 H 1.00900 * 111.00258 * 59.99951 * 13 11 10 33 33 H 0.97002 * 119.99721 * 355.01420 * 16 14 11 34 34 H 0.97001 * 120.00226 * 175.26888 * 19 18 17 35 35 H 0.97002 * 120.00109 * 355.26259 * 19 18 17 36 36 H 1.08997 * 109.47236 * 179.97438 * 21 17 16 37 37 H 1.09000 * 109.47119 * 300.00320 * 21 17 16 38 38 H 1.09002 * 109.46733 * 300.00215 * 22 21 17 39 39 H 1.09004 * 109.47104 * 180.02562 * 22 21 17 40 40 H 1.09006 * 109.46694 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.46597 * 60.00130 * 23 22 21 42 42 H 1.08996 * 109.47106 * 299.99679 * 24 23 22 43 43 H 1.09000 * 109.46808 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.47404 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47638 * 59.99155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 1 0.7884 -5.0069 0.8432 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7863 -6.7536 -0.8608 16 7 2.9582 -6.4586 1.3312 17 6 3.8193 -7.6357 1.4696 18 6 3.1027 -8.8480 0.9329 19 7 1.7718 -8.9746 1.1034 20 8 3.7246 -9.7121 0.3519 21 6 5.1123 -7.4172 0.6817 22 6 5.8398 -6.1863 1.2266 23 6 6.1732 -6.4035 2.7039 24 6 4.8800 -6.6220 3.4918 25 6 4.1527 -7.8529 2.9470 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8719 -3.6044 0.8905 30 1 2.8719 -3.6044 -0.8894 31 1 0.0232 -4.4009 -1.3299 32 1 1.3476 -5.1034 -2.0500 33 1 2.7503 -5.9157 2.1078 34 1 1.2998 -9.7195 0.6994 35 1 1.2860 -8.3209 1.6302 36 1 5.7532 -8.2928 0.7850 37 1 4.8748 -7.2625 -0.3708 38 1 5.1991 -5.3105 1.1236 39 1 6.7608 -6.0304 0.6649 40 1 6.6918 -5.5267 3.0920 41 1 6.8138 -7.2793 2.8068 42 1 4.2395 -5.7461 3.3889 43 1 5.1177 -6.7771 4.5442 44 1 3.2311 -8.0083 3.5080 45 1 4.7934 -8.7287 3.0499 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424089131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:07 Heat of formation + Delta-G solvation = -131.802266 kcal Electronic energy + Delta-G solvation = -25676.317845 eV Core-core repulsion = 22111.971730 eV Total energy + Delta-G solvation = -3564.346115 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.20776 -40.05355 -38.66605 -36.99907 -35.26165 -34.81514 -34.12281 -31.81271 -31.63661 -31.12962 -28.05646 -25.75628 -24.80777 -23.71066 -22.64097 -21.63400 -21.21633 -20.10362 -18.97198 -18.70736 -18.10100 -17.87057 -16.81482 -16.56726 -16.08269 -15.91211 -15.87827 -15.55468 -15.27615 -15.10605 -14.84687 -14.65513 -14.47726 -13.97741 -13.74868 -13.46274 -13.37808 -13.22060 -13.12352 -12.93077 -12.64746 -12.49136 -12.11509 -11.85419 -11.77716 -11.67076 -11.49672 -11.27613 -11.26009 -10.98332 -10.68874 -10.57686 -10.54135 -10.09501 -9.61421 -8.20086 -6.29507 1.39154 1.41797 1.44980 1.52474 1.62281 2.06871 2.41114 2.54009 3.14304 3.58739 3.62735 3.78355 3.80668 3.83383 4.14179 4.15800 4.23951 4.28608 4.28667 4.45927 4.50874 4.64211 4.69642 4.78132 4.86982 4.98373 5.10586 5.11970 5.17589 5.19463 5.27354 5.35713 5.41908 5.49685 5.52805 5.69095 5.83513 5.83552 6.08604 6.23752 6.36073 6.47142 6.53875 6.86527 7.22427 7.27762 7.39774 8.90700 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.004069 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.585910 B = 6879.288064 C = 7780.599484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.083 3.917 12 H 0.117 0.883 13 N -0.829 5.829 14 C 0.529 3.471 15 O -0.556 6.556 16 N -0.706 5.706 17 C 0.170 3.830 18 C 0.523 3.477 19 N -0.833 5.833 20 O -0.587 6.587 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.112 4.112 26 H 0.263 0.737 27 H 0.000 1.000 28 H 0.006 0.994 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.352 0.648 32 H 0.341 0.659 33 H 0.419 0.581 34 H 0.404 0.596 35 H 0.412 0.588 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -14.255 10.990 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.032 4.032 12 H 0.135 0.865 13 N -0.360 5.360 14 C 0.316 3.684 15 O -0.432 6.432 16 N -0.364 5.364 17 C 0.080 3.920 18 C 0.307 3.693 19 N -0.395 5.395 20 O -0.466 6.466 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.150 4.150 26 H 0.072 0.928 27 H 0.018 0.982 28 H 0.024 0.976 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.167 0.833 32 H 0.154 0.846 33 H 0.259 0.741 34 H 0.236 0.764 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.862 -15.768 10.236 20.012 hybrid contribution -0.004 2.209 -0.479 2.260 sum 6.858 -13.559 9.757 18.057 Atomic orbital electron populations 1.70056 1.07406 1.27600 1.51567 1.25801 0.95654 1.02763 0.94866 0.85556 0.79104 0.79623 0.77721 1.19038 1.20865 1.20229 1.21648 0.93306 0.92492 1.50496 0.92817 1.18966 0.94020 0.91914 0.95781 1.22128 0.98741 0.93791 1.01365 1.21436 0.94707 0.90990 0.96108 0.86513 1.58769 1.18317 1.55566 1.03362 1.20798 0.80602 0.84086 0.82906 1.90687 1.60217 1.54093 1.38222 1.45992 1.50473 1.29122 1.10789 1.20466 0.89961 0.82486 0.99070 1.20992 0.83315 0.87359 0.77627 1.43642 1.08179 1.32011 1.55712 1.90689 1.67569 1.44344 1.43994 1.21663 0.94812 0.99503 0.99175 1.21486 0.99678 0.96592 0.97454 1.21564 0.98064 1.02495 0.93454 1.21563 0.96320 0.96905 1.00522 1.21843 1.03076 1.00842 0.89260 0.92808 0.98187 0.97555 0.91185 0.94267 0.83286 0.84645 0.74132 0.76444 0.75741 0.91021 0.93533 0.92645 0.92053 0.90814 0.91303 0.90987 0.88785 0.88295 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.84 13.29 21.45 0.28 -52.55 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.95 42.33 29.54 68.60 2.03 44.35 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -28.63 9.11 25.60 0.23 -28.40 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.03 1.40 4.74 29.85 0.14 1.55 16 10 C -0.12 -4.31 4.78 30.59 0.15 -4.17 16 11 C 0.08 2.45 3.21 44.17 0.14 2.59 16 12 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 13 N -0.83 -26.49 8.94 -171.80 -1.54 -28.03 16 14 C 0.53 15.05 6.23 87.66 0.55 15.59 16 15 O -0.56 -20.32 13.53 -3.04 -0.04 -20.37 16 16 N -0.71 -14.29 3.47 -426.33 -1.48 -15.77 16 17 C 0.17 3.62 0.58 2.86 0.00 3.62 16 18 C 0.52 13.89 5.45 87.66 0.48 14.37 16 19 N -0.83 -16.38 8.45 -173.53 -1.47 -17.84 16 20 O -0.59 -20.86 16.92 -3.03 -0.05 -20.91 16 21 C -0.11 -2.92 4.11 30.59 0.13 -2.79 16 22 C -0.11 -2.44 5.77 30.60 0.18 -2.26 16 23 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 24 C -0.12 -1.32 5.75 30.59 0.18 -1.15 16 25 C -0.11 -1.50 4.78 30.60 0.15 -1.35 16 26 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.00 -0.01 6.87 -2.39 -0.02 -0.02 16 28 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.35 11.52 7.55 -89.69 -0.68 10.84 16 32 H 0.34 11.59 8.58 -89.69 -0.77 10.82 16 33 H 0.42 6.14 7.17 -92.71 -0.66 5.48 16 34 H 0.40 7.49 8.93 -92.71 -0.83 6.66 16 35 H 0.41 5.94 8.31 -92.71 -0.77 5.17 16 36 H 0.07 1.89 7.87 -2.39 -0.02 1.87 16 37 H 0.05 1.58 6.36 -2.39 -0.02 1.56 16 38 H 0.05 1.31 7.60 -2.39 -0.02 1.29 16 39 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 0.80 6.77 -2.39 -0.02 0.79 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -72.19 354.83 -1.97 -74.15 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -2.66 Total: 40.04 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 2.96 Total: -3.08 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -4.19 Total: -114.19 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -0.09 Total: -41.27 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -72.19 -1.97 -74.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424089131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.648 kcal (2) G-P(sol) polarization free energy of solvation -72.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds