Wall clock time and date at job start Fri Apr 10 2020 17:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46967 * 299.99843 * 3 2 1 6 6 H 1.48494 * 109.47444 * 60.00129 * 3 2 1 7 7 C 1.37875 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46830 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46963 * 179.97438 * 10 9 7 12 12 C 1.34781 * 120.00275 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99750 * 359.72805 * 12 11 10 14 14 N 1.34775 * 120.00049 * 179.72204 * 12 11 10 15 15 C 1.46505 * 119.99787 * 180.02562 * 14 12 11 16 16 C 1.52988 * 109.47039 * 174.83176 * 15 14 12 17 17 N 1.46901 * 115.55168 * 274.88172 * 16 15 14 18 18 C 1.47015 * 111.00040 * 58.39447 * 17 16 15 19 19 C 1.53097 * 109.26010 * 177.60763 * 18 17 16 20 20 O 1.43017 * 109.25657 * 56.85000 * 19 18 17 21 21 C 1.43011 * 113.73821 * 301.32862 * 20 19 18 22 22 C 1.47020 * 111.00195 * 294.76171 * 17 16 15 23 23 C 1.53003 * 117.49994 * 129.21171 * 16 15 14 24 24 C 1.53001 * 117.49978 * 60.55242 * 16 15 14 25 25 H 0.97004 * 120.00094 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47372 * 59.99688 * 9 7 2 27 27 H 1.09007 * 109.46786 * 299.99511 * 9 7 2 28 28 H 1.08993 * 109.47558 * 59.99605 * 10 9 7 29 29 H 1.08999 * 109.47138 * 299.99525 * 10 9 7 30 30 H 0.97002 * 119.99869 * 359.71939 * 11 10 9 31 31 H 0.96993 * 119.99943 * 0.02562 * 14 12 11 32 32 H 1.09004 * 109.47219 * 294.83632 * 15 14 12 33 33 H 1.08998 * 109.46986 * 54.83053 * 15 14 12 34 34 H 1.09000 * 109.50746 * 297.54490 * 18 17 16 35 35 H 1.09005 * 109.50424 * 57.67362 * 18 17 16 36 36 H 1.09008 * 109.50730 * 296.92016 * 19 18 17 37 37 H 1.08996 * 109.54329 * 176.80812 * 19 18 17 38 38 H 1.08997 * 109.51034 * 298.73434 * 21 20 19 39 39 H 1.09006 * 109.54255 * 178.62550 * 21 20 19 40 40 H 1.08996 * 109.50613 * 302.32783 * 22 17 16 41 41 H 1.09001 * 109.50412 * 62.41001 * 22 17 16 42 42 H 1.09001 * 117.49999 * 0.02562 * 23 16 15 43 43 H 1.08999 * 117.49622 * 145.01541 * 23 16 15 44 44 H 1.08999 * 117.49648 * 214.97405 * 24 16 15 45 45 H 1.08995 * 117.49684 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 6 2.1865 -6.0981 0.0031 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 0.0093 15 6 2.2451 -8.5340 0.0106 16 6 1.2564 -9.6934 0.1479 17 7 0.8694 -10.0366 1.5228 18 6 0.2633 -8.8828 2.2031 19 6 -0.1784 -9.2999 3.6084 20 8 0.9471 -9.8192 4.3218 21 6 1.5615 -10.9443 3.6878 22 6 2.0208 -10.5438 2.2833 23 6 1.3649 -10.8377 -0.8619 24 6 0.1970 -9.8517 -0.9446 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6239 -2.5566 0.8904 28 1 2.8712 -3.6039 0.8921 29 1 2.8725 -3.6048 -0.8877 30 1 0.5426 -4.9307 0.0061 31 1 0.5426 -7.2651 0.0130 32 1 2.7971 -8.6358 -0.9238 33 1 2.9425 -8.5500 0.8480 34 1 0.9944 -8.0776 2.2753 35 1 -0.6023 -8.5397 1.6364 36 1 -0.9486 -10.0678 3.5349 37 1 -0.5768 -8.4342 4.1373 38 1 0.8420 -11.7599 3.6167 39 1 2.4219 -11.2680 4.2735 40 1 2.4382 -11.4131 1.7752 41 1 2.7803 -9.7654 2.3561 42 1 2.1410 -10.7647 -1.6239 43 1 1.1488 -11.8451 -0.5061 44 1 -0.7869 -10.2109 -0.6432 45 1 0.2042 -9.1295 -1.7609 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433922224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:20 Heat of formation + Delta-G solvation = -48.137644 kcal Electronic energy + Delta-G solvation = -24467.955988 eV Core-core repulsion = 20907.237844 eV Total energy + Delta-G solvation = -3560.718144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50899 -39.34462 -37.98847 -34.91999 -34.12717 -33.87483 -32.78304 -31.46403 -29.68592 -27.48911 -26.47428 -24.58121 -24.28355 -22.54759 -21.35510 -21.02268 -20.51682 -19.78912 -18.08027 -16.97062 -16.43915 -16.32671 -15.93266 -15.69508 -15.29622 -15.19246 -15.13668 -14.84101 -14.50473 -14.00712 -13.78208 -13.52954 -13.45085 -12.73852 -12.72510 -12.51768 -12.28306 -11.84776 -11.79902 -11.65756 -11.17934 -11.05041 -10.95326 -10.78748 -10.61457 -10.42755 -10.32652 -9.96303 -9.90335 -9.55651 -9.24514 -9.08603 -8.72531 -8.48587 -8.25046 -6.09275 -4.11733 2.86564 3.24312 3.28716 3.36262 3.41489 3.49389 3.57493 3.60903 4.28248 4.39597 4.50680 4.57068 4.65214 4.69235 4.73681 4.86782 4.94122 5.04098 5.15384 5.23236 5.28029 5.32743 5.34851 5.45714 5.47440 5.57975 5.61264 5.65203 5.79300 5.84866 6.28799 6.39627 6.48612 6.60086 6.66391 6.77519 6.85914 6.99221 7.21196 7.56759 7.63199 7.90076 8.25756 8.41889 8.92834 8.98712 9.53108 11.02447 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021391 B = 0.002823 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.659892 B = 9916.553838 C =10464.564822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.697 3.303 13 O -0.599 6.599 14 N -0.750 5.750 15 C 0.155 3.845 16 C 0.009 3.991 17 N -0.496 5.496 18 C 0.014 3.986 19 C 0.065 3.935 20 O -0.385 6.385 21 C 0.065 3.935 22 C 0.015 3.985 23 C -0.145 4.145 24 C -0.152 4.152 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.393 0.607 31 H 0.393 0.607 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 -25.463 2.355 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.391 5.391 12 C 0.397 3.603 13 O -0.477 6.477 14 N -0.407 5.407 15 C 0.028 3.972 16 C -0.082 4.082 17 N -0.220 5.220 18 C -0.114 4.114 19 C -0.012 4.012 20 O -0.303 6.303 21 C -0.012 4.012 22 C -0.113 4.113 23 C -0.184 4.184 24 C -0.190 4.190 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.823 -25.605 2.525 25.794 hybrid contribution -0.025 1.497 -0.243 1.517 sum -1.848 -24.107 2.282 24.286 Atomic orbital electron populations 1.69965 1.06087 1.26739 1.50559 1.24995 0.94898 0.99418 0.95014 0.86456 0.80195 0.83322 0.77599 1.19564 1.20942 1.20939 1.21093 0.93310 0.90350 1.51107 0.92178 1.19326 0.94242 0.91092 0.97782 1.21590 0.95637 0.80400 1.00616 1.45532 1.09794 1.05317 1.78478 1.16082 0.85641 0.80489 0.78062 1.90892 1.11808 1.86679 1.58366 1.45183 1.09350 1.04431 1.81778 1.20973 0.93105 0.80675 1.02440 1.21832 1.01372 0.97955 0.86999 1.62254 1.28007 1.31724 1.00015 1.22835 1.00351 0.92637 0.95533 1.22684 0.88302 0.99171 0.91091 1.88018 1.45976 1.47776 1.48514 1.22652 0.97906 0.88634 0.92019 1.22797 0.92680 1.00846 0.94966 1.23080 1.00936 0.94921 0.99416 1.23087 0.94822 1.02271 0.98822 0.92923 0.95979 0.95988 0.92846 0.92796 0.77457 0.77287 0.91344 0.91315 0.92574 0.89647 0.92413 0.88240 0.92407 0.88446 0.89497 0.93275 0.88213 0.87901 0.87897 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 11 N -0.74 -13.17 5.56 -65.23 -0.36 -13.53 16 12 C 0.70 12.34 8.57 -86.92 -0.74 11.59 16 13 O -0.60 -13.14 16.34 5.29 0.09 -13.06 16 14 N -0.75 -9.52 4.33 -65.23 -0.28 -9.81 16 15 C 0.15 1.78 4.99 -4.05 -0.02 1.76 16 16 C 0.01 0.08 1.08 -131.60 -0.14 -0.06 16 17 N -0.50 -4.36 4.80 -218.66 -1.05 -5.41 16 18 C 0.01 0.13 4.65 -3.71 -0.02 0.12 16 19 C 0.06 0.59 7.01 37.21 0.26 0.85 16 20 O -0.38 -4.22 10.83 -35.23 -0.38 -4.60 16 21 C 0.07 0.54 7.01 37.21 0.26 0.80 16 22 C 0.01 0.13 5.46 -3.71 -0.02 0.11 16 23 C -0.15 -1.01 10.10 -26.69 -0.27 -1.28 16 24 C -0.15 -1.11 9.84 -26.69 -0.26 -1.37 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.39 6.00 8.49 -40.82 -0.35 5.65 16 31 H 0.39 4.07 7.71 -40.82 -0.31 3.76 16 32 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 33 H 0.07 0.92 6.52 -51.93 -0.34 0.58 16 34 H 0.06 0.66 6.86 -51.93 -0.36 0.31 16 35 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.52 6.69 -51.93 -0.35 0.17 16 42 H 0.10 0.65 8.05 -51.93 -0.42 0.23 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -33.06 364.00 -9.88 -42.94 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.56 Total: 4.52 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.53 Total: 2.43 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.96 Total: -54.19 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.30 Total: -17.66 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.06 -9.88 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433922224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.194 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds