Wall clock time and date at job start Fri Apr 10 2020 17:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47088 * 125.55951 * 2 1 4 4 C 1.54090 * 103.77687 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.51957 * 118.77400 * 4 3 2 6 6 C 1.52995 * 110.52297 * 241.37113 * 4 3 2 7 7 N 1.46905 * 109.47073 * 185.87185 * 6 4 3 8 8 C 1.46891 * 110.99930 * 287.44892 * 7 6 4 9 9 C 1.53248 * 109.34085 * 187.25175 * 8 7 6 10 10 N 1.47077 * 108.51696 * 306.17428 * 9 8 7 11 11 C 1.34787 * 120.87568 * 231.17860 * 10 9 8 12 12 O 1.21686 * 119.99883 * 5.23767 * 11 10 9 13 13 C 1.46378 * 119.99632 * 184.95043 * 11 10 9 14 14 H 1.08000 * 119.99740 * 354.57831 * 13 11 10 15 15 C 1.40051 * 119.99662 * 174.57499 * 13 11 10 16 16 N 1.30666 * 119.99935 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 119.99686 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47318 * 90.00272 * 17 15 13 19 19 H 1.48501 * 109.46952 * 209.99994 * 17 15 13 20 20 H 1.48502 * 109.47595 * 330.00045 * 17 15 13 21 21 C 1.47077 * 118.24263 * 51.45683 * 10 9 8 22 22 C 1.46893 * 110.99909 * 51.75415 * 7 6 4 23 23 O 1.45701 * 104.00719 * 0.02562 * 4 3 2 24 24 C 1.33765 * 109.48080 * 0.02562 * 23 4 3 25 25 O 1.21510 * 123.07878 * 179.97438 * 24 23 4 26 26 H 1.08995 * 109.47188 * 89.99650 * 1 2 3 27 27 H 1.09003 * 109.47034 * 209.99567 * 1 2 3 28 28 H 1.09000 * 109.47273 * 329.99119 * 1 2 3 29 29 H 1.09003 * 110.56217 * 61.40874 * 3 2 1 30 30 H 1.09001 * 110.69531 * 298.61667 * 3 2 1 31 31 H 1.08999 * 109.47511 * 65.87462 * 6 4 3 32 32 H 1.09001 * 109.47456 * 305.87078 * 6 4 3 33 33 H 1.09007 * 109.49453 * 67.29359 * 8 7 6 34 34 H 1.08997 * 109.49821 * 307.21203 * 8 7 6 35 35 H 1.08993 * 109.63037 * 186.46048 * 9 8 7 36 36 H 1.09001 * 109.78458 * 65.97462 * 9 8 7 37 37 H 0.96995 * 119.99757 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.62774 * 68.25030 * 21 10 9 39 39 H 1.08993 * 109.62856 * 188.82737 * 21 10 9 40 40 H 1.09008 * 109.49503 * 292.70456 * 22 7 6 41 41 H 1.08998 * 109.49759 * 52.78395 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3204 1.1966 0.0000 4 6 3.7513 0.6248 0.0007 5 1 4.2888 0.9391 -0.8940 6 6 4.5037 1.0636 1.2585 7 7 5.9031 0.6256 1.1698 8 6 6.0125 -0.8277 1.3532 9 6 7.4920 -1.2190 1.4349 10 7 8.1818 -0.6879 0.2495 11 6 8.9533 -1.4845 -0.5166 12 8 9.0109 -2.6783 -0.2877 13 6 9.7170 -0.9146 -1.6277 14 1 9.5953 0.1263 -1.8887 15 6 10.6054 -1.7191 -2.3522 16 7 10.7522 -2.9786 -2.0365 17 14 11.5805 -0.9917 -3.7696 18 1 12.8693 -0.4573 -3.2611 19 1 11.8464 -2.0466 -4.7804 20 1 10.8010 0.1072 -4.3943 21 6 8.0124 0.7367 -0.0743 22 6 6.5079 1.0496 -0.1000 23 8 3.5542 -0.8188 0.0003 24 6 2.2443 -1.0902 -0.0010 25 8 1.8015 -2.2218 -0.0020 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5140 29 1 2.1457 1.7921 0.8961 30 1 2.1471 1.7940 -0.8951 31 1 4.0376 0.6150 2.1358 32 1 4.4675 2.1497 1.3432 33 1 5.5478 -1.3369 0.5088 34 1 5.5083 -1.1170 2.2752 35 1 7.5829 -2.3049 1.4558 36 1 7.9359 -0.7970 2.3366 37 1 11.3672 -3.5358 -2.5385 38 1 8.5033 1.3457 0.6849 39 1 8.4477 0.9443 -1.0518 40 1 6.0363 0.5143 -0.9242 41 1 6.3629 2.1218 -0.2319 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496174020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:26 Heat of formation + Delta-G solvation = -77.191571 kcal Electronic energy + Delta-G solvation = -25057.146830 eV Core-core repulsion = 21359.335718 eV Total energy + Delta-G solvation = -3697.811112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82380 -38.97666 -37.45767 -36.36487 -35.68774 -33.64581 -32.47443 -31.04944 -30.42158 -28.19333 -26.97249 -25.97996 -24.20636 -23.19922 -22.74557 -21.18871 -20.52257 -18.75455 -17.71894 -17.22184 -16.90323 -16.32727 -15.84284 -15.38416 -15.11828 -14.78890 -14.54607 -14.34799 -14.21603 -14.11891 -13.94114 -13.67660 -13.00392 -12.87964 -12.64310 -12.51341 -12.25405 -12.11030 -11.61901 -11.36804 -11.15919 -11.01023 -10.93706 -10.89409 -10.82771 -10.52500 -10.40677 -10.19473 -9.96565 -9.26378 -8.84658 -8.23594 -7.55483 -7.15541 -6.17903 -4.63066 2.25645 2.61592 3.14213 3.20700 3.21071 3.23803 3.75027 4.03083 4.11869 4.28674 4.34175 4.56796 4.63837 4.73580 4.85756 4.90779 5.08653 5.18944 5.28254 5.37965 5.45176 5.50677 5.59253 5.73998 5.76448 5.82356 6.04834 6.09073 6.11566 6.25907 6.47241 6.58274 6.75668 7.09772 7.19674 7.20768 7.46206 7.63762 7.89249 8.14688 8.38182 9.03427 9.47144 10.60053 10.78708 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.003727 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.563836 B = 7511.029503 C = 7630.466510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.639 5.639 3 C 0.075 3.925 4 C 0.026 3.974 5 H 0.120 0.880 6 C 0.051 3.949 7 N -0.528 5.528 8 C 0.042 3.958 9 C 0.125 3.875 10 N -0.644 5.644 11 C 0.560 3.440 12 O -0.577 6.577 13 C -0.545 4.545 14 H 0.072 0.928 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 C 0.129 3.871 22 C 0.033 3.967 23 O -0.310 6.310 24 C 0.638 3.362 25 O -0.523 6.523 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.268 0.732 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.234 15.006 4.120 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.388 5.388 3 C -0.049 4.049 4 C -0.032 4.032 5 H 0.138 0.862 6 C -0.078 4.078 7 N -0.251 5.251 8 C -0.087 4.087 9 C 0.000 4.000 10 N -0.383 5.383 11 C 0.365 3.635 12 O -0.459 6.459 13 C -0.582 4.582 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.396 5.396 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 C 0.004 3.996 22 C -0.096 4.096 23 O -0.220 6.220 24 C 0.393 3.607 25 O -0.408 6.408 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.850 13.590 4.590 22.129 hybrid contribution -0.160 0.320 -1.387 1.432 sum -17.010 13.910 3.203 22.206 Atomic orbital electron populations 1.21444 0.75120 1.03514 1.02264 1.47953 1.07384 1.05984 1.77521 1.22818 0.88732 0.89035 1.04304 1.24975 0.96487 0.77470 1.04260 0.86230 1.22710 0.88747 1.01499 0.94870 1.62178 1.13213 1.15186 1.34484 1.22659 0.98519 0.86252 1.01242 1.21216 0.89372 1.00333 0.89040 1.48243 1.52676 1.08756 1.28622 1.18261 0.78054 0.85251 0.81888 1.90595 1.67043 1.15376 1.72911 1.20953 1.24834 0.97202 1.15184 0.90989 1.25730 0.96013 0.94292 0.97217 1.70012 1.28726 1.05553 1.35332 0.86394 0.80188 0.79346 0.80950 1.19733 1.20482 1.18923 1.21549 0.92265 0.83989 1.01753 1.22776 0.97528 0.99526 0.89742 1.87508 1.22627 1.25338 1.86540 1.18693 0.80447 0.85397 0.76192 1.91039 1.73867 1.20742 1.55141 0.92266 0.90155 0.90554 0.88885 0.89141 0.89820 0.88213 0.92741 0.91129 0.89579 0.93435 0.92084 0.93142 0.88719 0.94105 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.80 11.04 59.85 0.66 1.46 16 2 N -0.64 -6.38 3.36 -186.77 -0.63 -7.01 16 3 C 0.08 0.51 7.34 -3.15 -0.02 0.48 16 4 C 0.03 0.26 3.39 -26.16 -0.09 0.17 16 5 H 0.12 1.17 6.05 -51.93 -0.31 0.85 16 6 C 0.05 0.49 5.08 -3.82 -0.02 0.47 16 7 N -0.53 -7.26 4.83 -234.03 -1.13 -8.39 16 8 C 0.04 0.70 5.00 -3.70 -0.02 0.69 16 9 C 0.12 2.57 6.61 -3.60 -0.02 2.54 16 10 N -0.64 -14.90 3.00 -173.84 -0.52 -15.42 16 11 C 0.56 16.18 7.62 -12.98 -0.10 16.08 16 12 O -0.58 -19.11 14.50 5.20 0.08 -19.03 16 13 C -0.55 -15.28 8.86 -35.63 -0.32 -15.59 16 14 H 0.07 1.81 5.73 -52.49 -0.30 1.51 16 15 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 16 N -0.77 -23.26 11.84 55.55 0.66 -22.60 16 17 Si 0.91 20.04 29.56 -169.99 -5.02 15.02 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 C 0.13 2.35 6.50 -3.37 -0.02 2.33 16 22 C 0.03 0.47 4.76 -3.47 -0.02 0.45 16 23 O -0.31 -4.70 8.28 -37.82 -0.31 -5.02 16 24 C 0.64 9.61 8.85 53.71 0.48 10.08 16 25 O -0.52 -9.98 17.54 -19.12 -0.34 -10.32 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.40 7.73 -51.93 -0.40 -0.01 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.07 6.07 -51.93 -0.32 0.75 16 34 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 35 H 0.09 2.00 7.04 -51.93 -0.37 1.63 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.78 5.45 -51.93 -0.28 1.49 16 40 H 0.04 0.64 6.49 -51.92 -0.34 0.30 16 41 H 0.08 0.81 8.11 -51.93 -0.42 0.38 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -38.98 328.41 -7.50 -46.48 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.65 Total: -0.16 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 0.41 Total: 21.50 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -1.62 Total: -53.42 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.57 Total: -34.37 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -38.98 -7.50 -46.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496174020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.708 kcal (2) G-P(sol) polarization free energy of solvation -38.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds