Wall clock time and date at job start Fri Apr 10 2020 17:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47101 * 270.00107 * 3 2 1 5 5 H 1.48494 * 109.47076 * 30.00041 * 3 2 1 6 6 H 1.48501 * 109.47262 * 150.00135 * 3 2 1 7 7 C 1.37879 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00147 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00227 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46600 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47350 * 304.99903 * 11 10 9 13 13 N 1.46904 * 109.47385 * 64.99932 * 11 10 9 14 14 C 1.50699 * 109.46985 * 184.99641 * 11 10 9 15 15 O 1.21274 * 120.00480 * 260.00211 * 14 11 10 16 16 N 1.34777 * 119.99799 * 80.00174 * 14 11 10 17 17 C 1.46501 * 120.00047 * 180.02562 * 16 14 11 18 18 C 1.50702 * 109.47377 * 269.99885 * 17 16 14 19 19 N 1.34767 * 120.00126 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99723 * 0.02562 * 18 17 16 21 21 C 1.46504 * 120.00304 * 0.02562 * 16 14 11 22 22 C 1.55238 * 110.58101 * 234.87635 * 21 16 14 23 23 C 1.54894 * 102.58338 * 203.33396 * 22 21 16 24 24 C 1.54266 * 104.31305 * 37.93170 * 23 22 21 25 25 C 1.53869 * 106.60031 * 336.32486 * 24 23 22 26 26 H 0.96999 * 119.99992 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47123 * 59.99578 * 9 7 2 28 28 H 1.08998 * 109.46351 * 299.99964 * 9 7 2 29 29 H 1.08998 * 109.46881 * 59.99820 * 10 9 7 30 30 H 1.08995 * 109.47140 * 299.99415 * 10 9 7 31 31 H 1.00901 * 110.99760 * 59.99499 * 13 11 10 32 32 H 1.00893 * 111.00091 * 183.94498 * 13 11 10 33 33 H 1.09001 * 109.47168 * 30.00132 * 17 16 14 34 34 H 1.09002 * 109.47048 * 149.99838 * 17 16 14 35 35 H 0.96998 * 120.00540 * 0.02562 * 19 18 17 36 36 H 0.97006 * 120.00218 * 180.02562 * 19 18 17 37 37 H 1.09006 * 110.43286 * 357.45942 * 21 16 14 38 38 H 1.08996 * 110.89448 * 85.04960 * 22 21 16 39 39 H 1.08993 * 110.76342 * 321.56626 * 22 21 16 40 40 H 1.09002 * 110.48891 * 279.18596 * 23 22 21 41 41 H 1.08998 * 110.48494 * 156.67683 * 23 22 21 42 42 H 1.09001 * 110.03084 * 95.60669 * 24 23 22 43 43 H 1.08996 * 110.03108 * 216.98559 * 24 23 22 44 44 H 1.08999 * 110.04012 * 119.28327 * 25 24 23 45 45 H 1.09006 * 110.02998 * 240.67078 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6368 -0.0001 11 6 5.5513 -2.6367 -0.0001 12 1 5.9147 -2.0473 -0.8419 13 7 6.0411 -2.0515 1.2551 14 6 6.0536 -4.0522 -0.1240 15 8 6.4277 -4.6514 0.8618 16 7 6.0871 -4.6521 -1.3304 17 6 6.5749 -6.0283 -1.4508 18 6 8.0616 -6.0147 -1.6970 19 7 8.7313 -7.1751 -1.8419 20 8 8.6554 -4.9593 -1.7647 21 6 5.6358 -3.9282 -2.5214 22 6 4.5365 -4.7332 -3.2654 23 6 4.6310 -4.1790 -4.7087 24 6 6.1420 -3.9706 -4.9391 25 6 6.7809 -3.8112 -3.5484 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6809 0.8905 28 1 3.8750 -0.6798 -0.8895 29 1 3.6583 -3.1503 -0.8903 30 1 3.6577 -3.1507 0.8897 31 1 5.7175 -2.5805 2.0511 32 1 7.0476 -1.9811 1.2528 33 1 6.3642 -6.5704 -0.5289 34 1 6.0731 -6.5200 -2.2842 35 1 8.2565 -8.0192 -1.7881 36 1 9.6884 -7.1664 -2.0000 37 1 5.2657 -2.9399 -2.2485 38 1 3.5533 -4.5344 -2.8389 39 1 4.7589 -5.8000 -3.2459 40 1 4.0986 -3.2312 -4.7891 41 1 4.2323 -4.9009 -5.4214 42 1 6.5652 -4.8372 -5.4473 43 1 6.3087 -3.0718 -5.5327 44 1 7.5141 -4.6003 -3.3816 45 1 7.2584 -2.8348 -3.4666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591593598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:57 Heat of formation + Delta-G solvation = -83.766715 kcal Electronic energy + Delta-G solvation = -25691.796661 eV Core-core repulsion = 22129.533524 eV Total energy + Delta-G solvation = -3562.263137 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83405 -39.09333 -37.91724 -35.39766 -34.39245 -33.92496 -32.73655 -30.47017 -29.18927 -28.75824 -27.55257 -26.22233 -23.37061 -21.36842 -20.95309 -20.49188 -20.03405 -18.91574 -17.68217 -17.59940 -17.05881 -16.67118 -16.19153 -15.58516 -15.34882 -14.96827 -14.68558 -14.43429 -14.07670 -13.94343 -13.75072 -13.38792 -13.06535 -12.59215 -12.39246 -12.38285 -11.90105 -11.77082 -11.60616 -11.26765 -11.15907 -10.97363 -10.85645 -10.71511 -10.48611 -10.30984 -10.29632 -9.88743 -9.85631 -9.72639 -9.54769 -9.08362 -8.71690 -8.47932 -8.35303 -5.97509 -3.94822 2.39775 2.61264 2.82964 3.38247 3.43760 3.46214 3.55080 4.44513 4.52749 4.54015 4.58669 4.69700 4.79640 4.88383 5.01884 5.18135 5.21312 5.36356 5.37459 5.39266 5.47397 5.50244 5.59137 5.71523 5.81598 5.87336 6.01564 6.09972 6.22000 6.27809 6.31689 6.37133 6.49187 6.52451 6.89543 7.01666 7.26309 7.38418 7.44363 7.62286 7.72322 7.89077 7.99736 8.21706 8.60023 9.07134 9.65956 11.15928 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017526 B = 0.004562 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.246790 B = 6136.225848 C = 6954.262987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.519 4.519 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.089 4.089 11 C 0.075 3.925 12 H 0.099 0.901 13 N -0.810 5.810 14 C 0.494 3.506 15 O -0.551 6.551 16 N -0.586 5.586 17 C 0.088 3.912 18 C 0.500 3.500 19 N -0.858 5.858 20 O -0.525 6.525 21 C 0.128 3.872 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.142 4.142 26 H 0.262 0.738 27 H 0.034 0.966 28 H 0.008 0.992 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.349 0.651 32 H 0.336 0.664 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.401 0.599 36 H 0.400 0.600 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.423 -15.271 -9.371 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.557 4.557 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.127 4.127 11 C -0.040 4.040 12 H 0.117 0.883 13 N -0.338 5.338 14 C 0.282 3.718 15 O -0.428 6.428 16 N -0.317 5.317 17 C -0.039 4.039 18 C 0.284 3.716 19 N -0.423 5.423 20 O -0.401 6.401 21 C 0.024 3.976 22 C -0.175 4.175 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.180 4.180 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.148 0.852 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.229 0.771 36 H 0.231 0.769 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.245 -13.993 -9.022 22.574 hybrid contribution 1.126 -0.612 -0.066 1.283 sum 16.371 -14.605 -9.088 23.746 Atomic orbital electron populations 1.69919 1.06350 1.26786 1.51555 1.24993 0.94668 0.99157 0.94586 0.86804 0.80778 0.83532 0.78441 1.20484 1.21637 1.18384 1.21164 0.89680 0.94290 1.50586 0.91304 1.19489 0.96358 0.91136 0.97199 1.21522 0.87934 1.01631 1.01613 1.21894 0.99325 0.87765 0.95041 0.88330 1.59057 1.15519 1.55889 1.03330 1.22636 0.76310 0.90871 0.81957 1.90628 1.48915 1.66353 1.36948 1.47690 1.63224 1.12739 1.08060 1.21244 0.90707 0.86810 1.05136 1.21324 0.91029 0.83907 0.75349 1.43860 1.12823 1.08697 1.76898 1.90749 1.69915 1.30634 1.48756 1.22401 0.94003 0.96931 0.84254 1.22952 0.99489 0.99392 0.95645 1.22310 0.96157 1.01719 0.95962 1.22114 0.95563 1.01513 0.96906 1.22689 0.98004 1.03701 0.93594 0.92877 0.94768 0.97381 0.92025 0.92167 0.83737 0.85213 0.86964 0.87362 0.77131 0.76921 0.86951 0.89936 0.91364 0.90691 0.91475 0.92271 0.91679 0.90117 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.07 13.96 55.43 0.77 -27.30 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 9 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 10 C -0.09 -1.73 4.46 -26.73 -0.12 -1.85 16 11 C 0.08 1.28 2.29 -68.86 -0.16 1.12 16 12 H 0.10 1.62 6.68 -51.93 -0.35 1.27 16 13 N -0.81 -13.69 8.44 -5.65 -0.05 -13.74 16 14 C 0.49 8.09 6.91 -10.99 -0.08 8.01 16 15 O -0.55 -10.23 15.83 5.56 0.09 -10.14 16 16 N -0.59 -7.79 2.05 -165.37 -0.34 -8.13 16 17 C 0.09 0.92 5.46 -5.19 -0.03 0.89 16 18 C 0.50 5.54 6.98 -10.99 -0.08 5.46 16 19 N -0.86 -5.59 8.87 31.22 0.28 -5.31 16 20 O -0.53 -8.06 15.07 5.55 0.08 -7.97 16 21 C 0.13 1.57 2.50 -66.08 -0.17 1.40 16 22 C -0.14 -1.43 6.45 -24.55 -0.16 -1.59 16 23 C -0.12 -1.18 6.82 -25.07 -0.17 -1.35 16 24 C -0.12 -1.17 6.80 -25.62 -0.17 -1.34 16 25 C -0.14 -1.63 5.96 -25.62 -0.15 -1.79 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.03 0.85 6.81 -51.93 -0.35 0.49 16 28 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 29 H 0.06 1.14 6.99 -51.93 -0.36 0.77 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.35 5.91 8.58 -39.29 -0.34 5.57 16 32 H 0.34 5.15 9.06 -39.30 -0.36 4.80 16 33 H 0.11 1.18 7.42 -51.93 -0.39 0.79 16 34 H 0.11 0.79 6.05 -51.93 -0.31 0.48 16 35 H 0.40 1.30 8.83 -40.82 -0.36 0.94 16 36 H 0.40 2.31 8.93 -40.82 -0.36 1.94 16 37 H 0.11 1.55 4.90 -51.93 -0.25 1.29 16 38 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 39 H 0.07 0.60 6.08 -51.93 -0.32 0.28 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.99 4.27 -51.93 -0.22 0.77 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -35.74 351.57 -7.26 -43.00 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -6.91 Total: 11.35 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.82 Total: -4.42 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.66 Total: -54.48 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.17 Total: -18.11 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.74 -7.26 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591593598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.764 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds