Wall clock time and date at job start Fri Apr 10 2020 17:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47101 * 270.00107 * 3 2 1 5 5 H 1.48494 * 109.47076 * 30.00041 * 3 2 1 6 6 H 1.48501 * 109.47262 * 150.00135 * 3 2 1 7 7 C 1.37879 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00147 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00227 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46600 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47350 * 304.99903 * 11 10 9 13 13 N 1.46904 * 109.47385 * 64.99932 * 11 10 9 14 14 C 1.50699 * 109.46985 * 184.99641 * 11 10 9 15 15 O 1.21274 * 120.00480 * 260.00211 * 14 11 10 16 16 N 1.34777 * 119.99799 * 80.00174 * 14 11 10 17 17 C 1.46501 * 120.00047 * 180.02562 * 16 14 11 18 18 C 1.50702 * 109.47377 * 269.99885 * 17 16 14 19 19 N 1.34767 * 120.00126 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99723 * 0.02562 * 18 17 16 21 21 C 1.46504 * 120.00304 * 0.02562 * 16 14 11 22 22 C 1.55238 * 110.58101 * 234.87635 * 21 16 14 23 23 C 1.54894 * 102.58338 * 203.33396 * 22 21 16 24 24 C 1.54266 * 104.31305 * 37.93170 * 23 22 21 25 25 C 1.53869 * 106.60031 * 336.32486 * 24 23 22 26 26 H 0.96999 * 119.99992 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47123 * 59.99578 * 9 7 2 28 28 H 1.08998 * 109.46351 * 299.99964 * 9 7 2 29 29 H 1.08998 * 109.46881 * 59.99820 * 10 9 7 30 30 H 1.08995 * 109.47140 * 299.99415 * 10 9 7 31 31 H 1.00901 * 110.99760 * 59.99499 * 13 11 10 32 32 H 1.00893 * 111.00091 * 183.94498 * 13 11 10 33 33 H 1.09001 * 109.47168 * 30.00132 * 17 16 14 34 34 H 1.09002 * 109.47048 * 149.99838 * 17 16 14 35 35 H 0.96998 * 120.00540 * 0.02562 * 19 18 17 36 36 H 0.97006 * 120.00218 * 180.02562 * 19 18 17 37 37 H 1.09006 * 110.43286 * 357.45942 * 21 16 14 38 38 H 1.08996 * 110.89448 * 85.04960 * 22 21 16 39 39 H 1.08993 * 110.76342 * 321.56626 * 22 21 16 40 40 H 1.09002 * 110.48891 * 279.18596 * 23 22 21 41 41 H 1.08998 * 110.48494 * 156.67683 * 23 22 21 42 42 H 1.09001 * 110.03084 * 95.60669 * 24 23 22 43 43 H 1.08996 * 110.03108 * 216.98559 * 24 23 22 44 44 H 1.08999 * 110.04012 * 119.28327 * 25 24 23 45 45 H 1.09006 * 110.02998 * 240.67078 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6368 -0.0001 11 6 5.5513 -2.6367 -0.0001 12 1 5.9147 -2.0473 -0.8419 13 7 6.0411 -2.0515 1.2551 14 6 6.0536 -4.0522 -0.1240 15 8 6.4277 -4.6514 0.8618 16 7 6.0871 -4.6521 -1.3304 17 6 6.5749 -6.0283 -1.4508 18 6 8.0616 -6.0147 -1.6970 19 7 8.7313 -7.1751 -1.8419 20 8 8.6554 -4.9593 -1.7647 21 6 5.6358 -3.9282 -2.5214 22 6 4.5365 -4.7332 -3.2654 23 6 4.6310 -4.1790 -4.7087 24 6 6.1420 -3.9706 -4.9391 25 6 6.7809 -3.8112 -3.5484 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6809 0.8905 28 1 3.8750 -0.6798 -0.8895 29 1 3.6583 -3.1503 -0.8903 30 1 3.6577 -3.1507 0.8897 31 1 5.7175 -2.5805 2.0511 32 1 7.0476 -1.9811 1.2528 33 1 6.3642 -6.5704 -0.5289 34 1 6.0731 -6.5200 -2.2842 35 1 8.2565 -8.0192 -1.7881 36 1 9.6884 -7.1664 -2.0000 37 1 5.2657 -2.9399 -2.2485 38 1 3.5533 -4.5344 -2.8389 39 1 4.7589 -5.8000 -3.2459 40 1 4.0986 -3.2312 -4.7891 41 1 4.2323 -4.9009 -5.4214 42 1 6.5652 -4.8372 -5.4473 43 1 6.3087 -3.0718 -5.5327 44 1 7.5141 -4.6003 -3.3816 45 1 7.2584 -2.8348 -3.4666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591593598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:56 Heat of formation + Delta-G solvation = -112.526839 kcal Electronic energy + Delta-G solvation = -25693.043794 eV Core-core repulsion = 22129.533524 eV Total energy + Delta-G solvation = -3563.510269 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90279 -40.12336 -38.88248 -36.94284 -35.41527 -34.79905 -34.67510 -32.30453 -30.18625 -29.60365 -28.64725 -27.76349 -24.96527 -22.41133 -22.16505 -21.61001 -21.22998 -19.95533 -19.04528 -18.57941 -18.42484 -17.89712 -17.30971 -16.84970 -16.32972 -16.23838 -15.91066 -15.78528 -15.43091 -15.25479 -14.75879 -14.64294 -14.38512 -14.23883 -13.94009 -13.49771 -13.24254 -12.86297 -12.81389 -12.71106 -12.52019 -12.06446 -11.97413 -11.94502 -11.78375 -11.60491 -11.59927 -11.28389 -11.26060 -11.21083 -11.11457 -10.69590 -10.59535 -9.77426 -9.70636 -8.23612 -6.25990 1.39170 1.39732 1.43245 1.57194 1.57911 1.78163 2.42309 2.67420 3.13084 3.35192 3.56564 3.66634 3.69695 3.91696 3.98252 4.09223 4.11411 4.21505 4.32383 4.38783 4.49301 4.56249 4.63828 4.68080 4.79715 4.80688 4.98263 5.10128 5.12664 5.20785 5.27889 5.35667 5.39534 5.49128 5.50100 5.64869 5.73804 5.87916 6.00275 6.23862 6.33931 6.41184 6.43285 6.81532 6.98262 7.31386 7.38429 8.93007 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017526 B = 0.004562 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.246790 B = 6136.225848 C = 6954.262987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.008 3.992 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.526 4.526 8 H 0.033 0.967 9 C 0.003 3.997 10 C -0.076 4.076 11 C 0.082 3.918 12 H 0.106 0.894 13 N -0.817 5.817 14 C 0.492 3.508 15 O -0.577 6.577 16 N -0.579 5.579 17 C 0.082 3.918 18 C 0.498 3.502 19 N -0.834 5.834 20 O -0.574 6.574 21 C 0.121 3.879 22 C -0.132 4.132 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.136 4.136 26 H 0.265 0.735 27 H 0.027 0.973 28 H 0.018 0.982 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.347 0.653 32 H 0.345 0.655 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.419 0.581 36 H 0.407 0.593 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.048 -16.181 -10.863 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.189 4.189 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.173 1.173 7 C -0.564 4.564 8 H 0.051 0.949 9 C -0.034 4.034 10 C -0.115 4.115 11 C -0.033 4.033 12 H 0.124 0.876 13 N -0.346 5.346 14 C 0.280 3.720 15 O -0.457 6.457 16 N -0.309 5.309 17 C -0.044 4.044 18 C 0.282 3.718 19 N -0.399 5.399 20 O -0.453 6.453 21 C 0.018 3.982 22 C -0.170 4.170 23 C -0.158 4.158 24 C -0.154 4.154 25 C -0.174 4.174 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.251 0.749 36 H 0.239 0.761 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.888 -14.978 -10.554 24.919 hybrid contribution 0.590 -0.459 0.377 0.837 sum 17.478 -15.437 -10.177 25.443 Atomic orbital electron populations 1.70062 1.08198 1.27951 1.53129 1.25903 0.95477 1.03197 0.94298 0.85733 0.79584 0.78609 0.79227 1.18959 1.21394 1.17255 1.21492 0.92104 0.92975 1.49835 0.94887 1.19360 0.93242 0.93786 0.97054 1.21282 0.90008 0.98895 1.01278 1.21676 0.97254 0.88998 0.95399 0.87639 1.59044 1.16310 1.55964 1.03233 1.22336 0.76531 0.90474 0.82697 1.90610 1.50422 1.66728 1.37981 1.47661 1.62103 1.13839 1.07311 1.21540 0.90931 0.85184 1.06725 1.21381 0.91187 0.84231 0.75008 1.43646 1.13196 1.08345 1.74735 1.90738 1.70708 1.32507 1.51393 1.22496 0.95085 0.96505 0.84157 1.22942 0.97811 1.00504 0.95786 1.22304 0.96190 1.01685 0.95668 1.22083 0.95231 1.02467 0.95634 1.22616 0.97525 1.02734 0.94555 0.92662 0.95479 0.96411 0.91263 0.93687 0.83916 0.84187 0.86815 0.83746 0.74949 0.76104 0.88819 0.91490 0.89047 0.91867 0.89471 0.90525 0.91438 0.90399 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 2 C 0.01 0.46 5.47 84.66 0.46 0.92 16 3 Si 0.94 45.27 27.47 68.60 1.88 47.16 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 7 C -0.53 -30.38 9.66 25.60 0.25 -30.13 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C 0.00 0.15 3.93 29.85 0.12 0.26 16 10 C -0.08 -3.00 4.46 30.59 0.14 -2.86 16 11 C 0.08 2.77 2.29 44.17 0.10 2.87 16 12 H 0.11 3.40 6.68 -2.39 -0.02 3.39 16 13 N -0.82 -27.34 8.44 -171.80 -1.45 -28.79 16 14 C 0.49 15.90 6.91 87.66 0.61 16.51 16 15 O -0.58 -21.26 15.83 -3.01 -0.05 -21.31 16 16 N -0.58 -14.75 2.05 -795.49 -1.63 -16.38 16 17 C 0.08 1.54 5.46 85.63 0.47 2.01 16 18 C 0.50 10.06 6.98 87.66 0.61 10.67 16 19 N -0.83 -8.62 8.87 -173.54 -1.54 -10.16 16 20 O -0.57 -17.05 15.07 -3.04 -0.05 -17.10 16 21 C 0.12 2.83 2.50 46.19 0.12 2.95 16 22 C -0.13 -2.51 6.45 32.01 0.21 -2.31 16 23 C -0.12 -2.02 6.82 31.67 0.22 -1.81 16 24 C -0.12 -1.92 6.80 31.32 0.21 -1.71 16 25 C -0.14 -2.94 5.96 31.32 0.19 -2.75 16 26 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 27 H 0.03 1.32 6.81 -2.39 -0.02 1.30 16 28 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 29 H 0.07 2.58 6.99 -2.39 -0.02 2.56 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.35 11.80 8.58 -89.69 -0.77 11.03 16 32 H 0.35 10.42 9.06 -89.70 -0.81 9.61 16 33 H 0.11 2.15 7.42 -2.39 -0.02 2.14 16 34 H 0.15 1.57 6.05 -2.39 -0.01 1.55 16 35 H 0.42 1.31 8.83 -92.71 -0.82 0.50 16 36 H 0.41 3.69 8.93 -92.70 -0.83 2.86 16 37 H 0.09 2.55 4.90 -2.38 -0.01 2.53 16 38 H 0.07 1.50 8.11 -2.39 -0.02 1.48 16 39 H 0.09 1.29 6.08 -2.39 -0.01 1.27 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.77 4.27 -2.39 -0.01 1.76 16 45 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -78.50 351.57 -1.07 -79.57 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -2.23 Total: 32.21 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 3.69 Total: -5.39 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -4.32 Total: -115.14 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.09 Total: -38.41 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.16 kcal Total: -78.50 -1.07 -79.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591593598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.956 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds