Wall clock time and date at job start Fri Apr 10 2020 17:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 14 14 C 1.50699 * 109.47482 * 174.99860 * 11 10 9 15 15 O 1.21286 * 119.99857 * 100.00182 * 14 11 10 16 16 N 1.34781 * 120.00160 * 279.99980 * 14 11 10 17 17 C 1.46497 * 119.99716 * 179.97438 * 16 14 11 18 18 C 1.50701 * 109.47210 * 90.00583 * 17 16 14 19 19 N 1.34771 * 120.00372 * 179.97438 * 18 17 16 20 20 O 1.21283 * 119.99445 * 359.97438 * 18 17 16 21 21 C 1.46493 * 120.00033 * 0.02562 * 16 14 11 22 22 C 1.54270 * 110.03302 * 237.90711 * 21 16 14 23 23 C 1.54964 * 104.16061 * 217.13528 * 22 21 16 24 24 C 1.54897 * 102.77546 * 37.88373 * 23 22 21 25 25 C 1.53873 * 110.03737 * 120.68399 * 21 16 14 26 26 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 31 31 H 1.00899 * 111.00057 * 299.99390 * 13 11 10 32 32 H 1.00898 * 110.99947 * 63.95776 * 13 11 10 33 33 H 1.09004 * 109.47048 * 210.00058 * 17 16 14 34 34 H 1.08994 * 109.47701 * 330.00380 * 17 16 14 35 35 H 0.96997 * 119.99705 * 359.97438 * 19 18 17 36 36 H 0.97003 * 120.00431 * 180.02562 * 19 18 17 37 37 H 1.09005 * 110.01834 * 359.29433 * 21 16 14 38 38 H 1.09002 * 110.47969 * 335.77880 * 22 21 16 39 39 H 1.08999 * 110.48692 * 98.42467 * 22 21 16 40 40 H 1.09002 * 110.71582 * 279.57080 * 23 22 21 41 41 H 1.08994 * 110.92369 * 156.29006 * 23 22 21 42 42 H 1.08999 * 110.48232 * 203.40658 * 24 23 22 43 43 H 1.08991 * 110.59681 * 80.81946 * 24 23 22 44 44 H 1.08995 * 110.03493 * 238.56948 * 25 21 16 45 45 H 1.08999 * 110.02803 * 0.02562 * 25 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 1 5.9147 -2.0475 0.8418 13 7 6.0410 -2.0514 -1.2553 14 6 6.0536 -4.0522 0.1236 15 8 6.4277 -4.6513 -0.8624 16 7 6.0872 -4.6524 1.3300 17 6 6.5750 -6.0286 1.4501 18 6 8.0617 -6.0149 1.6962 19 7 8.7315 -7.1754 1.8409 20 8 8.6553 -4.9595 1.7641 21 6 5.6349 -3.9290 2.5208 22 6 6.7710 -3.8630 3.5623 23 6 6.0466 -4.0151 4.9237 24 6 4.9397 -5.0518 4.6088 25 6 4.4707 -4.6840 3.1859 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6798 -0.8895 28 1 3.8745 -0.6810 0.8905 29 1 3.6577 -3.1507 0.8897 30 1 3.6584 -3.1504 -0.8902 31 1 5.7175 -2.5803 -2.0514 32 1 5.7717 -1.0820 -1.3314 33 1 6.0733 -6.5204 2.2835 34 1 6.3643 -6.5705 0.5282 35 1 8.2566 -8.0194 1.7869 36 1 9.6884 -7.1666 1.9997 37 1 5.3194 -2.9219 2.2482 38 1 7.4749 -4.6815 3.4113 39 1 7.2837 -2.9026 3.5073 40 1 5.6099 -3.0665 5.2363 41 1 6.7265 -4.3955 5.6860 42 1 4.1169 -4.9585 5.3176 43 1 5.3452 -6.0633 4.6273 44 1 3.5906 -4.0432 3.2368 45 1 4.2426 -5.5890 2.6228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591593603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:59 Heat of formation + Delta-G solvation = -83.361900 kcal Electronic energy + Delta-G solvation = -25722.494625 eV Core-core repulsion = 22160.249042 eV Total energy + Delta-G solvation = -3562.245583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77496 -38.97885 -37.86026 -35.66897 -34.22084 -33.83489 -32.79620 -30.30493 -29.27846 -28.74559 -27.49333 -26.21468 -23.55456 -21.18016 -20.88840 -20.78888 -20.16820 -18.71721 -17.78990 -17.47070 -17.06003 -16.71214 -16.09185 -15.51736 -15.15570 -14.70080 -14.58420 -14.27794 -14.12459 -14.02744 -13.74826 -13.27137 -13.09310 -12.81469 -12.65056 -12.23724 -11.91798 -11.79288 -11.73571 -11.32059 -11.19037 -11.10996 -10.97110 -10.68390 -10.60049 -10.31769 -10.21677 -10.08479 -9.85545 -9.79600 -9.35385 -9.30564 -8.65301 -8.61153 -8.25704 -6.11174 -4.10466 2.49509 2.70405 2.95134 3.26317 3.34667 3.36519 3.50632 4.38768 4.47220 4.53997 4.60009 4.76860 4.85916 5.04610 5.06679 5.22161 5.24242 5.28597 5.34828 5.46906 5.48017 5.53962 5.57983 5.63683 5.81051 5.84434 6.00728 6.13636 6.17692 6.25169 6.28298 6.34287 6.42123 6.59329 6.67215 7.09931 7.10574 7.23349 7.32509 7.54853 7.68038 7.82989 8.09295 8.37782 8.45277 8.92759 9.50493 11.01986 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.004512 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.236814 B = 6203.953104 C = 6981.114505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.131 4.131 11 C 0.073 3.927 12 H 0.098 0.902 13 N -0.830 5.830 14 C 0.536 3.464 15 O -0.536 6.536 16 N -0.591 5.591 17 C 0.094 3.906 18 C 0.499 3.501 19 N -0.859 5.859 20 O -0.522 6.522 21 C 0.130 3.870 22 C -0.137 4.137 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.141 4.141 26 H 0.264 0.736 27 H 0.011 0.989 28 H 0.018 0.982 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.347 0.653 32 H 0.350 0.650 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.400 0.600 36 H 0.400 0.600 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.733 -14.400 9.393 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.171 4.171 11 C -0.042 4.042 12 H 0.116 0.884 13 N -0.362 5.362 14 C 0.325 3.675 15 O -0.411 6.411 16 N -0.323 5.323 17 C -0.033 4.033 18 C 0.283 3.717 19 N -0.424 5.424 20 O -0.397 6.397 21 C 0.026 3.974 22 C -0.175 4.175 23 C -0.164 4.164 24 C -0.160 4.160 25 C -0.179 4.179 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.228 0.772 36 H 0.230 0.770 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.701 -13.942 9.117 22.218 hybrid contribution -0.518 0.571 -0.106 0.778 sum 14.183 -13.371 9.011 21.474 Atomic orbital electron populations 1.69909 1.06326 1.26985 1.50731 1.25026 0.94730 0.99171 0.94414 0.86797 0.80378 0.83609 0.78622 1.20217 1.21333 1.18923 1.21048 0.89156 0.94493 1.51294 0.91054 1.19574 0.97569 0.91321 0.96319 1.22257 0.91205 1.01179 1.02474 1.21537 0.95613 0.91632 0.95424 0.88431 1.58707 1.66840 1.07323 1.03285 1.20791 0.76103 0.88695 0.81923 1.90620 1.47648 1.65921 1.36918 1.47623 1.63996 1.12892 1.07817 1.21154 0.90746 0.86406 1.04981 1.21322 0.91035 0.83923 0.75453 1.43860 1.12800 1.08671 1.77070 1.90772 1.69862 1.30581 1.48462 1.22076 0.93795 0.96861 0.84664 1.22907 0.97487 1.03652 0.93443 1.22518 0.97373 0.99538 0.96980 1.22342 0.98495 0.98655 0.96511 1.22613 0.98409 1.01114 0.95762 0.92652 0.97042 0.96384 0.91632 0.92047 0.83941 0.83519 0.87541 0.86989 0.77213 0.76961 0.87568 0.90098 0.91142 0.91096 0.91719 0.91337 0.92095 0.89858 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -14.33 9.66 -34.44 -0.33 -14.67 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 10 C -0.13 -2.50 4.48 -26.74 -0.12 -2.62 16 11 C 0.07 1.26 2.34 -68.87 -0.16 1.10 16 12 H 0.10 1.64 6.61 -51.93 -0.34 1.29 16 13 N -0.83 -14.39 8.94 -5.66 -0.05 -14.44 16 14 C 0.54 9.25 6.92 -10.98 -0.08 9.18 16 15 O -0.54 -10.60 15.83 5.55 0.09 -10.51 16 16 N -0.59 -8.15 1.94 -166.20 -0.32 -8.47 16 17 C 0.09 1.02 5.20 -5.19 -0.03 1.00 16 18 C 0.50 5.81 6.88 -10.99 -0.08 5.73 16 19 N -0.86 -5.97 8.87 31.22 0.28 -5.70 16 20 O -0.52 -8.43 15.17 5.55 0.08 -8.35 16 21 C 0.13 1.62 2.51 -66.81 -0.17 1.46 16 22 C -0.14 -1.60 5.84 -25.03 -0.15 -1.75 16 23 C -0.13 -1.20 6.91 -24.69 -0.17 -1.37 16 24 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 25 C -0.14 -1.51 5.90 -25.62 -0.15 -1.66 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.01 0.25 6.29 -51.93 -0.33 -0.07 16 28 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 29 H 0.07 1.20 6.99 -51.93 -0.36 0.84 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.35 6.02 8.58 -39.29 -0.34 5.69 16 32 H 0.35 5.79 7.55 -39.29 -0.30 5.49 16 33 H 0.11 0.81 6.87 -51.93 -0.36 0.45 16 34 H 0.11 1.21 7.42 -51.93 -0.39 0.83 16 35 H 0.40 1.43 8.83 -40.82 -0.36 1.07 16 36 H 0.40 2.49 8.93 -40.82 -0.36 2.12 16 37 H 0.11 1.48 4.93 -51.93 -0.26 1.22 16 38 H 0.08 1.00 4.36 -51.93 -0.23 0.78 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.73 6.96 -51.93 -0.36 0.37 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -35.29 350.49 -7.24 -42.53 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.90 Total: 12.99 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.80 Total: -3.35 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.68 Total: -55.05 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.17 Total: -18.86 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.29 -7.24 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591593603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.833 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds