Wall clock time and date at job start Fri Apr 10 2020 17:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 14 14 C 1.50699 * 109.47482 * 174.99860 * 11 10 9 15 15 O 1.21286 * 119.99857 * 100.00182 * 14 11 10 16 16 N 1.34781 * 120.00160 * 279.99980 * 14 11 10 17 17 C 1.46497 * 119.99716 * 179.97438 * 16 14 11 18 18 C 1.50701 * 109.47210 * 90.00583 * 17 16 14 19 19 N 1.34771 * 120.00372 * 179.97438 * 18 17 16 20 20 O 1.21283 * 119.99445 * 359.97438 * 18 17 16 21 21 C 1.46493 * 120.00033 * 0.02562 * 16 14 11 22 22 C 1.54270 * 110.03302 * 237.90711 * 21 16 14 23 23 C 1.54964 * 104.16061 * 217.13528 * 22 21 16 24 24 C 1.54897 * 102.77546 * 37.88373 * 23 22 21 25 25 C 1.53873 * 110.03737 * 120.68399 * 21 16 14 26 26 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 31 31 H 1.00899 * 111.00057 * 299.99390 * 13 11 10 32 32 H 1.00898 * 110.99947 * 63.95776 * 13 11 10 33 33 H 1.09004 * 109.47048 * 210.00058 * 17 16 14 34 34 H 1.08994 * 109.47701 * 330.00380 * 17 16 14 35 35 H 0.96997 * 119.99705 * 359.97438 * 19 18 17 36 36 H 0.97003 * 120.00431 * 180.02562 * 19 18 17 37 37 H 1.09005 * 110.01834 * 359.29433 * 21 16 14 38 38 H 1.09002 * 110.47969 * 335.77880 * 22 21 16 39 39 H 1.08999 * 110.48692 * 98.42467 * 22 21 16 40 40 H 1.09002 * 110.71582 * 279.57080 * 23 22 21 41 41 H 1.08994 * 110.92369 * 156.29006 * 23 22 21 42 42 H 1.08999 * 110.48232 * 203.40658 * 24 23 22 43 43 H 1.08991 * 110.59681 * 80.81946 * 24 23 22 44 44 H 1.08995 * 110.03493 * 238.56948 * 25 21 16 45 45 H 1.08999 * 110.02803 * 0.02562 * 25 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 1 5.9147 -2.0475 0.8418 13 7 6.0410 -2.0514 -1.2553 14 6 6.0536 -4.0522 0.1236 15 8 6.4277 -4.6513 -0.8624 16 7 6.0872 -4.6524 1.3300 17 6 6.5750 -6.0286 1.4501 18 6 8.0617 -6.0149 1.6962 19 7 8.7315 -7.1754 1.8409 20 8 8.6553 -4.9595 1.7641 21 6 5.6349 -3.9290 2.5208 22 6 6.7710 -3.8630 3.5623 23 6 6.0466 -4.0151 4.9237 24 6 4.9397 -5.0518 4.6088 25 6 4.4707 -4.6840 3.1859 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6798 -0.8895 28 1 3.8745 -0.6810 0.8905 29 1 3.6577 -3.1507 0.8897 30 1 3.6584 -3.1504 -0.8902 31 1 5.7175 -2.5803 -2.0514 32 1 5.7717 -1.0820 -1.3314 33 1 6.0733 -6.5204 2.2835 34 1 6.3643 -6.5705 0.5282 35 1 8.2566 -8.0194 1.7869 36 1 9.6884 -7.1666 1.9997 37 1 5.3194 -2.9219 2.2482 38 1 7.4749 -4.6815 3.4113 39 1 7.2837 -2.9026 3.5073 40 1 5.6099 -3.0665 5.2363 41 1 6.7265 -4.3955 5.6860 42 1 4.1169 -4.9585 5.3176 43 1 5.3452 -6.0633 4.6273 44 1 3.5906 -4.0432 3.2368 45 1 4.2426 -5.5890 2.6228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591593603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:58 Heat of formation + Delta-G solvation = -111.754004 kcal Electronic energy + Delta-G solvation = -25723.725799 eV Core-core repulsion = 22160.249042 eV Total energy + Delta-G solvation = -3563.476757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87272 -40.05784 -38.85953 -37.21449 -35.27400 -34.82709 -34.63510 -32.10610 -30.29279 -29.60138 -28.61797 -27.68110 -25.17065 -22.42625 -21.96362 -21.69925 -21.47230 -19.78214 -19.22824 -18.64747 -18.27864 -17.93684 -17.10241 -16.64211 -16.25081 -16.18209 -15.79079 -15.65407 -15.61025 -15.19598 -14.87776 -14.65450 -14.42980 -14.33254 -13.94291 -13.59105 -13.11725 -13.05071 -12.83643 -12.73220 -12.60805 -12.06598 -11.98719 -11.91548 -11.89389 -11.67971 -11.59998 -11.40540 -11.40041 -11.19535 -10.78735 -10.74498 -10.57251 -9.77920 -9.64524 -8.29358 -6.34036 1.37722 1.39089 1.47552 1.50184 1.63079 1.80935 2.35926 2.70382 3.06272 3.37971 3.61369 3.68885 3.71936 3.96987 4.01952 4.12053 4.12669 4.17890 4.35564 4.43085 4.46792 4.54868 4.61279 4.64095 4.69854 4.81846 4.93536 5.00396 5.09741 5.23907 5.25930 5.33987 5.37670 5.41788 5.44845 5.51129 5.62120 5.91940 6.01388 6.25527 6.29895 6.45789 6.46165 6.73525 7.08936 7.30626 7.36199 8.87141 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.004512 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.236814 B = 6203.953104 C = 6981.114505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.529 4.529 8 H 0.031 0.969 9 C -0.005 4.005 10 C -0.116 4.116 11 C 0.080 3.920 12 H 0.105 0.895 13 N -0.832 5.832 14 C 0.529 3.471 15 O -0.567 6.567 16 N -0.584 5.584 17 C 0.088 3.912 18 C 0.497 3.503 19 N -0.834 5.834 20 O -0.574 6.574 21 C 0.124 3.876 22 C -0.132 4.132 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.138 4.138 26 H 0.266 0.734 27 H 0.021 0.979 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.346 0.654 32 H 0.354 0.646 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.419 0.581 36 H 0.407 0.593 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.330 -15.144 10.797 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.567 4.567 8 H 0.050 0.950 9 C -0.043 4.043 10 C -0.156 4.156 11 C -0.035 4.035 12 H 0.122 0.878 13 N -0.364 5.364 14 C 0.318 3.682 15 O -0.446 6.446 16 N -0.315 5.315 17 C -0.038 4.038 18 C 0.281 3.719 19 N -0.400 5.400 20 O -0.453 6.453 21 C 0.021 3.979 22 C -0.170 4.170 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.176 4.176 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.160 0.840 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.132 0.868 35 H 0.250 0.750 36 H 0.239 0.761 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.315 -14.764 10.559 24.406 hybrid contribution -1.046 0.671 -0.525 1.349 sum 15.269 -14.093 10.034 23.075 Atomic orbital electron populations 1.70064 1.08336 1.28146 1.52485 1.25971 0.95540 1.03382 0.94054 0.85705 0.79728 0.78342 0.79185 1.19373 1.21203 1.16513 1.21367 0.91780 0.93029 1.50570 0.95045 1.19489 0.94196 0.93659 0.96932 1.22035 0.92692 0.98923 1.01939 1.21434 0.93954 0.92478 0.95676 0.87751 1.58718 1.66765 1.07620 1.03288 1.20734 0.76229 0.88540 0.82693 1.90597 1.49409 1.66471 1.38118 1.47619 1.62811 1.13985 1.07035 1.21466 0.90881 0.84836 1.06640 1.21405 0.91251 0.84226 0.75029 1.43638 1.13172 1.08314 1.74857 1.90759 1.70724 1.32558 1.51252 1.22188 0.94949 0.96328 0.84470 1.22832 0.97064 1.02668 0.94458 1.22506 0.97601 0.99880 0.95926 1.22335 0.98471 0.99431 0.94993 1.22577 0.96988 1.00874 0.97176 0.92517 0.96092 0.95476 0.91278 0.93532 0.84020 0.83051 0.83785 0.86793 0.74964 0.76147 0.89323 0.90335 0.92793 0.91373 0.90209 0.90477 0.90019 0.91286 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.01 0.43 5.47 84.66 0.46 0.90 16 3 Si 0.95 43.05 27.47 68.60 1.88 44.94 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 7 C -0.53 -29.59 9.66 25.60 0.25 -29.34 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C -0.01 -0.23 3.81 29.85 0.11 -0.12 16 10 C -0.12 -4.42 4.48 30.59 0.14 -4.28 16 11 C 0.08 2.72 2.34 44.17 0.10 2.82 16 12 H 0.10 3.43 6.61 -2.39 -0.02 3.42 16 13 N -0.83 -28.39 8.94 -171.81 -1.54 -29.92 16 14 C 0.53 18.12 6.92 87.66 0.61 18.73 16 15 O -0.57 -22.41 15.83 -3.05 -0.05 -22.46 16 16 N -0.58 -15.55 1.94 -798.11 -1.55 -17.09 16 17 C 0.09 1.73 5.20 85.63 0.45 2.17 16 18 C 0.50 10.70 6.88 87.66 0.60 11.30 16 19 N -0.83 -9.47 8.87 -173.53 -1.54 -11.01 16 20 O -0.57 -18.12 15.17 -3.04 -0.05 -18.17 16 21 C 0.12 2.98 2.51 45.72 0.11 3.09 16 22 C -0.13 -2.92 5.84 31.70 0.18 -2.74 16 23 C -0.12 -2.02 6.91 31.91 0.22 -1.80 16 24 C -0.11 -1.68 6.83 31.67 0.22 -1.46 16 25 C -0.14 -2.72 5.90 31.32 0.18 -2.53 16 26 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 27 H 0.02 0.89 6.29 -2.39 -0.02 0.88 16 28 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 29 H 0.07 2.55 6.99 -2.39 -0.02 2.53 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.35 11.97 8.58 -89.69 -0.77 11.20 16 32 H 0.35 11.30 7.55 -89.70 -0.68 10.63 16 33 H 0.14 1.67 6.87 -2.38 -0.02 1.66 16 34 H 0.11 2.26 7.42 -2.39 -0.02 2.24 16 35 H 0.42 1.64 8.83 -92.71 -0.82 0.82 16 36 H 0.41 4.10 8.93 -92.71 -0.83 3.27 16 37 H 0.09 2.44 4.93 -2.38 -0.01 2.42 16 38 H 0.08 1.82 4.36 -2.39 -0.01 1.81 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 1.44 6.96 -2.39 -0.02 1.42 16 Total: -1.00 -78.17 350.49 -0.99 -79.16 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -2.10 Total: 36.17 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 3.64 Total: -3.26 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -4.32 Total: -116.37 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.09 Total: -40.63 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Total: -78.17 -0.99 -79.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591593603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.593 kcal (2) G-P(sol) polarization free energy of solvation -78.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds