Wall clock time and date at job start Fri Apr 10 2020 17:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46822 * 124.32987 * 2 1 4 4 C 1.54486 * 105.43742 * 196.99778 * 3 2 1 5 5 H 1.09000 * 110.97081 * 92.76834 * 4 3 2 6 6 N 1.46504 * 110.96728 * 216.49196 * 4 3 2 7 7 C 1.34773 * 119.99736 * 201.91380 * 6 4 3 8 8 O 1.21585 * 120.00328 * 359.97438 * 7 6 4 9 9 N 1.34782 * 119.99910 * 180.02562 * 7 6 4 10 10 C 1.47423 * 125.64708 * 359.96780 * 9 7 6 11 11 C 1.54909 * 104.83351 * 155.90981 * 10 9 7 12 12 C 1.55158 * 101.61642 * 36.99324 * 11 10 9 13 13 O 1.42898 * 110.71953 * 82.87702 * 12 11 10 14 14 C 1.50695 * 110.72412 * 206.15548 * 12 11 10 15 15 H 1.08007 * 119.99897 * 359.97438 * 14 12 11 16 16 C 1.37878 * 120.00476 * 179.97438 * 14 12 11 17 17 N 1.31518 * 119.99546 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00362 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47151 * 59.99831 * 18 16 14 20 20 H 1.48496 * 109.47153 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47115 * 300.00274 * 18 16 14 22 22 C 1.47016 * 125.64850 * 180.02562 * 9 7 6 23 23 C 1.54622 * 101.80048 * 334.62922 * 4 3 2 24 24 C 1.34417 * 124.34867 * 180.02562 * 2 1 3 25 25 O 1.21279 * 124.93883 * 359.54877 * 24 2 1 26 26 H 1.08996 * 109.47391 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47040 * 299.94257 * 1 2 3 28 28 H 1.09003 * 109.46875 * 59.93692 * 1 2 3 29 29 H 1.08998 * 110.24325 * 78.02311 * 3 2 1 30 30 H 1.08997 * 110.28589 * 315.99517 * 3 2 1 31 31 H 0.96999 * 120.00254 * 21.91075 * 6 4 3 32 32 H 1.09000 * 110.36544 * 37.07402 * 10 9 7 33 33 H 1.09002 * 110.46474 * 274.79752 * 10 9 7 34 34 H 1.09002 * 111.00594 * 155.08642 * 11 10 9 35 35 H 1.09002 * 111.00655 * 278.89906 * 11 10 9 36 36 H 0.96707 * 113.99877 * 179.97438 * 13 12 11 37 37 H 0.97004 * 119.99847 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.88531 * 300.42930 * 22 9 7 39 39 H 1.08996 * 109.88671 * 61.44743 * 22 9 7 40 40 H 1.09003 * 110.48889 * 143.45953 * 23 4 3 41 41 H 1.09001 * 110.48647 * 266.10316 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2125 0.0000 4 6 3.7010 0.7489 -0.4353 5 1 3.8275 0.8457 -1.5136 6 7 4.7418 1.4909 0.2806 7 6 5.9844 1.5751 -0.2345 8 8 6.2418 1.0351 -1.2930 9 7 6.9422 2.2573 0.4244 10 6 6.7686 2.9562 1.7108 11 6 8.1905 3.0211 2.3219 12 6 9.0626 3.2540 1.0599 13 8 9.0842 4.6391 0.7089 14 6 10.4609 2.7350 1.2747 15 1 10.7284 2.2773 2.2157 16 6 11.3989 2.8443 0.2701 17 7 11.0733 3.4020 -0.8756 18 14 13.1324 2.2015 0.5367 19 1 13.0818 0.7454 0.8233 20 1 13.9416 2.4381 -0.6858 21 1 13.7522 2.9107 1.6848 22 6 8.3326 2.4285 -0.0214 23 6 3.6898 -0.7378 -0.0107 24 6 2.2235 -1.1098 -0.0005 25 8 1.7946 -2.2442 0.0068 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5129 0.8905 28 1 -0.3633 0.5148 -0.8895 29 1 2.3305 1.6436 1.0004 30 1 1.8989 1.9392 -0.7103 31 1 4.5367 1.9214 1.1252 32 1 6.1012 2.3918 2.3621 33 1 6.3790 3.9612 1.5489 34 1 8.2792 3.8556 3.0175 35 1 8.4502 2.0807 2.8081 36 1 9.6164 4.8383 -0.0737 37 1 11.7331 3.4786 -1.5826 38 1 8.8103 1.4546 -0.1284 39 1 8.3541 2.9585 -0.9736 40 1 4.2326 -1.3455 -0.7347 41 1 4.1195 -0.8536 0.9844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:12 Heat of formation + Delta-G solvation = -124.244332 kcal Electronic energy + Delta-G solvation = -24526.690073 eV Core-core repulsion = 20826.838601 eV Total energy + Delta-G solvation = -3699.851473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80274 -40.93670 -39.15315 -37.71298 -36.06880 -35.48244 -34.14789 -32.63270 -31.33520 -29.56366 -28.58351 -27.50586 -26.60714 -24.34536 -22.73272 -21.40891 -21.28994 -20.54608 -19.26722 -18.88450 -17.93323 -17.70645 -17.22908 -16.75427 -16.60709 -16.33350 -16.12801 -15.33180 -15.07667 -14.77918 -14.71915 -14.70774 -14.53967 -14.34114 -13.74951 -13.47233 -13.36185 -13.32002 -13.18913 -12.84377 -12.81316 -12.51880 -12.32189 -12.30557 -12.24881 -12.04944 -11.37037 -11.19175 -11.15124 -10.61907 -10.28689 -10.25447 -9.79865 -9.40438 -8.25739 -6.40993 1.41363 1.42872 1.44736 1.51350 1.53606 2.00718 2.14124 2.38768 2.96088 3.01250 3.30794 3.48423 3.77556 3.85160 3.96966 4.12414 4.21155 4.39424 4.42786 4.43832 4.56741 4.65058 4.68634 4.75280 4.77575 4.84913 4.90136 5.07822 5.17840 5.26431 5.40371 5.44332 5.45246 5.51577 5.78153 5.94781 6.03306 6.17177 6.65489 7.00951 7.06477 7.31206 7.41016 7.56142 8.80075 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.030932 B = 0.003202 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.996232 B = 8743.159901 C = 9080.931857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.617 5.617 3 C 0.108 3.892 4 C 0.157 3.843 5 H 0.095 0.905 6 N -0.714 5.714 7 C 0.714 3.286 8 O -0.640 6.640 9 N -0.632 5.632 10 C 0.107 3.893 11 C -0.113 4.113 12 C 0.233 3.767 13 O -0.588 6.588 14 C -0.558 4.558 15 H 0.067 0.933 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.962 3.038 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.268 1.268 22 C 0.138 3.862 23 C -0.167 4.167 24 C 0.518 3.482 25 O -0.579 6.579 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.415 0.585 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.378 0.622 37 H 0.271 0.729 38 H 0.029 0.971 39 H 0.026 0.974 40 H 0.089 0.911 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.779 0.444 5.885 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.350 5.350 3 C -0.014 4.014 4 C 0.051 3.949 5 H 0.114 0.886 6 N -0.372 5.372 7 C 0.416 3.584 8 O -0.521 6.521 9 N -0.368 5.368 10 C -0.014 4.014 11 C -0.151 4.151 12 C 0.193 3.807 13 O -0.398 6.398 14 C -0.596 4.596 15 H 0.086 0.914 16 C -0.175 4.175 17 N -0.557 5.557 18 Si 0.787 3.213 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.192 1.192 22 C 0.014 3.986 23 C -0.209 4.209 24 C 0.306 3.694 25 O -0.460 6.460 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.254 0.746 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.229 0.771 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.108 0.892 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.303 -0.427 5.447 20.061 hybrid contribution 1.689 -0.396 -0.654 1.854 sum -17.614 -0.823 4.792 18.273 Atomic orbital electron populations 1.21797 0.76141 1.03502 1.03884 1.48279 1.07705 1.06690 1.72359 1.22422 0.87102 0.86851 1.05055 1.21504 0.86749 0.88851 0.97842 0.88648 1.44693 1.07367 1.58302 1.26829 1.15653 0.80958 0.79022 0.82736 1.90879 1.81941 1.54076 1.25249 1.47846 1.10430 1.54144 1.24428 1.22434 0.98273 0.97360 0.83362 1.22733 0.93162 1.02522 0.96633 1.19701 0.92357 0.78874 0.89814 1.86056 1.74618 1.26961 1.52115 1.21853 0.96394 1.40375 1.00957 0.91443 1.25801 1.02884 0.94354 0.94484 1.69670 1.36442 1.44432 1.05107 0.85548 0.79289 0.78817 0.77639 1.19942 1.21049 1.19239 1.22392 0.78926 0.98771 0.98506 1.22821 0.93762 0.98808 1.05514 1.20992 0.89664 0.84313 0.74422 1.90692 1.79306 1.23039 1.52915 0.91550 0.89421 0.89837 0.87306 0.86666 0.74633 0.87558 0.90642 0.89193 0.89983 0.77131 0.91984 0.95265 0.95548 0.89225 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 11.14 127.77 1.42 2.37 16 2 N -0.62 -9.72 3.33 -842.75 -2.81 -12.53 16 3 C 0.11 1.17 7.08 86.82 0.61 1.78 16 4 C 0.16 3.06 3.48 46.05 0.16 3.22 16 5 H 0.10 2.26 7.63 -2.39 -0.02 2.24 16 6 N -0.71 -15.74 5.13 -452.76 -2.32 -18.06 16 7 C 0.71 25.41 8.49 179.05 1.52 26.93 16 8 O -0.64 -29.11 16.36 -3.98 -0.07 -29.18 16 9 N -0.63 -23.55 3.33 -829.66 -2.76 -26.31 16 10 C 0.11 3.02 6.57 86.86 0.57 3.59 16 11 C -0.11 -3.95 6.22 31.99 0.20 -3.75 16 12 C 0.23 10.85 0.86 -10.33 -0.01 10.84 16 13 O -0.59 -28.86 13.09 -148.98 -1.95 -30.81 16 14 C -0.56 -28.56 8.11 25.60 0.21 -28.35 16 15 H 0.07 3.35 7.76 -2.91 -0.02 3.32 16 16 C 0.03 1.32 5.28 84.65 0.45 1.76 16 17 N -0.92 -49.23 10.98 21.45 0.24 -49.00 16 18 Si 0.96 41.58 29.54 68.60 2.03 43.60 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 C 0.14 6.62 5.54 86.75 0.48 7.10 16 23 C -0.17 -3.75 6.59 30.58 0.20 -3.55 16 24 C 0.52 12.40 8.03 87.90 0.71 13.10 16 25 O -0.58 -18.92 17.35 -3.03 -0.05 -18.97 16 26 H 0.07 0.99 7.53 -2.39 -0.02 0.97 16 27 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.62 7.78 -2.39 -0.02 0.60 16 30 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.42 6.07 6.87 -92.71 -0.64 5.43 16 32 H 0.11 1.97 7.30 -2.39 -0.02 1.95 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.08 2.77 8.02 -2.39 -0.02 2.75 16 36 H 0.38 19.71 6.99 -74.05 -0.52 19.19 16 37 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 38 H 0.03 1.56 7.81 -2.39 -0.02 1.54 16 39 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 40 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.12 2.41 8.08 -2.39 -0.02 2.39 16 Total: -1.00 -73.82 338.82 -1.27 -75.09 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.09 Total: 31.11 kcal Atomic # 6 Polarization: 28.53 SS G_CDS: 6.52 Total: 35.05 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -7.66 Total: -105.89 kcal Atomic # 8 Polarization: -76.89 SS G_CDS: -2.07 Total: -78.96 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -73.82 -1.27 -75.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.159 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds