Wall clock time and date at job start Fri Apr 10 2020 17:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46769 * 124.34673 * 2 1 4 4 C 1.54484 * 105.46784 * 197.03750 * 3 2 1 5 5 H 1.08999 * 111.00325 * 92.72346 * 4 3 2 6 6 N 1.46502 * 110.96213 * 216.46459 * 4 3 2 7 7 C 1.34778 * 119.99606 * 198.83339 * 6 4 3 8 8 O 1.21585 * 120.00055 * 0.02562 * 7 6 4 9 9 N 1.34782 * 120.00172 * 180.02562 * 7 6 4 10 10 C 1.47425 * 125.64189 * 0.02562 * 9 7 6 11 11 C 1.54918 * 104.82827 * 204.10422 * 10 9 7 12 12 C 1.55157 * 101.58155 * 322.99497 * 11 10 9 13 13 O 1.42894 * 110.71995 * 276.95544 * 12 11 10 14 14 C 1.50702 * 110.71903 * 153.86325 * 12 11 10 15 15 H 1.08003 * 120.00035 * 359.97438 * 14 12 11 16 16 C 1.37875 * 120.00014 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00096 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99940 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47222 * 60.00154 * 18 16 14 20 20 H 1.48498 * 109.47246 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47191 * 300.00078 * 18 16 14 22 22 C 1.47015 * 125.64929 * 179.97438 * 9 7 6 23 23 C 1.54625 * 101.76810 * 334.58181 * 4 3 2 24 24 C 1.34421 * 124.35023 * 180.02562 * 2 1 3 25 25 O 1.21281 * 124.93827 * 359.60808 * 24 2 1 26 26 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47326 * 299.95536 * 1 2 3 28 28 H 1.09004 * 109.46750 * 59.95264 * 1 2 3 29 29 H 1.08999 * 110.24181 * 78.03658 * 3 2 1 30 30 H 1.08994 * 110.24605 * 316.03479 * 3 2 1 31 31 H 0.96997 * 120.00739 * 18.83602 * 6 4 3 32 32 H 1.08999 * 110.36633 * 85.27695 * 10 9 7 33 33 H 1.08996 * 110.37033 * 322.94075 * 10 9 7 34 34 H 1.09001 * 111.00522 * 204.91555 * 11 10 9 35 35 H 1.09000 * 110.99891 * 81.06585 * 11 10 9 36 36 H 0.96698 * 114.00183 * 180.02562 * 13 12 11 37 37 H 0.97002 * 119.99826 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.88350 * 59.54436 * 22 9 7 39 39 H 1.08998 * 109.88602 * 298.38102 * 22 9 7 40 40 H 1.08996 * 110.48582 * 143.47649 * 23 4 3 41 41 H 1.08999 * 110.48966 * 266.12552 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7488 -0.4362 5 1 3.8271 0.8452 -1.5146 6 7 4.7418 1.4911 0.2791 7 6 5.9993 1.5240 -0.2048 8 8 6.2696 0.9380 -1.2353 9 7 6.9571 2.2064 0.4535 10 6 6.7687 2.9574 1.7080 11 6 7.9017 4.0139 1.7117 12 6 9.0731 3.2165 1.0798 13 8 9.7335 2.4212 2.0663 14 6 10.0494 4.1466 0.4068 15 1 9.8732 5.2122 0.4145 16 6 11.1675 3.6373 -0.2189 17 7 11.3818 2.3398 -0.2287 18 14 12.3772 4.7902 -1.0537 19 1 12.9272 5.7398 -0.0531 20 1 13.4850 3.9996 -1.6478 21 1 11.6807 5.5477 -2.1244 22 6 8.3630 2.3242 0.0400 23 6 3.6898 -0.7378 -0.0109 24 6 2.2235 -1.1098 -0.0005 25 8 1.7946 -2.2442 0.0058 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5131 0.8903 28 1 -0.3633 0.5146 -0.8896 29 1 2.3308 1.6427 1.0005 30 1 1.8982 1.9385 -0.7099 31 1 4.5261 1.9588 1.1010 32 1 6.8670 2.2929 2.5664 33 1 5.7944 3.4461 1.7150 34 1 8.1435 4.3239 2.7283 35 1 7.6367 4.8731 1.0955 36 1 10.4742 1.9032 1.7226 37 1 12.1683 1.9815 -0.6692 38 1 8.4221 2.7853 -0.9459 39 1 8.8271 1.3382 0.0187 40 1 4.2324 -1.3457 -0.7348 41 1 4.1197 -0.8531 0.9841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:14 Heat of formation + Delta-G solvation = -98.422090 kcal Electronic energy + Delta-G solvation = -24527.424191 eV Core-core repulsion = 20828.692455 eV Total energy + Delta-G solvation = -3698.731736 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79849 -39.56906 -37.60509 -36.59837 -34.42247 -34.33026 -32.19077 -31.52617 -29.87637 -27.96676 -27.69453 -26.55893 -24.97011 -22.90493 -21.73167 -20.17913 -19.68277 -19.41684 -17.73459 -17.20210 -16.92713 -16.77541 -15.83120 -15.51575 -15.10950 -14.97547 -14.47855 -14.14478 -14.02055 -13.78745 -13.56827 -13.22682 -12.92732 -12.87603 -12.69637 -12.57476 -12.36040 -11.88035 -11.70442 -11.51031 -11.37660 -11.06850 -10.85808 -10.70516 -10.54770 -10.21885 -10.17938 -9.73996 -9.38355 -9.07542 -9.04131 -8.69343 -8.35725 -7.87025 -6.31796 -4.40583 2.37505 2.58192 2.97643 3.21070 3.26927 3.28467 3.55840 4.06434 4.20581 4.25763 4.38777 4.69176 4.71682 4.95653 4.99042 5.05634 5.12528 5.30312 5.31516 5.39366 5.60964 5.66520 5.76952 5.77474 5.96368 6.03553 6.15275 6.45510 6.52262 6.66113 6.77408 6.82189 6.90280 7.18087 7.27185 7.50703 7.70980 7.91921 7.97766 8.39628 8.62218 8.98117 9.28291 9.40610 10.75976 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.033650 B = 0.003137 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.894883 B = 8922.714965 C = 9095.650615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.625 5.625 3 C 0.099 3.901 4 C 0.160 3.840 5 H 0.111 0.889 6 N -0.743 5.743 7 C 0.717 3.283 8 O -0.592 6.592 9 N -0.627 5.627 10 C 0.102 3.898 11 C -0.117 4.117 12 C 0.249 3.751 13 O -0.586 6.586 14 C -0.539 4.539 15 H 0.066 0.934 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.120 3.880 23 C -0.170 4.170 24 C 0.522 3.478 25 O -0.532 6.532 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.387 0.613 37 H 0.272 0.728 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.348 1.010 2.892 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.361 5.361 3 C -0.025 4.025 4 C 0.052 3.948 5 H 0.129 0.871 6 N -0.400 5.400 7 C 0.419 3.581 8 O -0.470 6.470 9 N -0.364 5.364 10 C -0.021 4.021 11 C -0.155 4.155 12 C 0.208 3.792 13 O -0.396 6.396 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.534 5.534 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.002 4.002 23 C -0.211 4.211 24 C 0.310 3.690 25 O -0.408 6.408 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.239 0.761 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.795 0.063 2.400 17.956 hybrid contribution 0.940 0.599 -0.431 1.195 sum -16.855 0.662 1.970 16.982 Atomic orbital electron populations 1.21572 0.77878 1.03833 1.01572 1.48146 1.06577 1.07101 1.74237 1.22282 0.90049 0.87552 1.02579 1.21442 0.85263 0.89505 0.98573 0.87133 1.45030 1.08050 1.57635 1.29313 1.15462 0.79696 0.79836 0.83091 1.90907 1.80958 1.50157 1.24968 1.47957 1.10796 1.52133 1.25485 1.22264 0.98666 0.94230 0.86941 1.22737 0.94333 0.96672 1.01710 1.19468 0.88620 0.86952 0.84149 1.86067 1.50976 1.63502 1.39101 1.21481 1.06953 0.93809 1.35459 0.91547 1.25075 0.97797 0.95410 0.94979 1.69562 1.28717 1.11209 1.43954 0.86440 0.80216 0.80516 0.79617 1.19992 1.21051 1.20013 1.22939 0.75951 1.01213 1.00116 1.22900 0.93940 0.98514 1.05758 1.20964 0.89230 0.84248 0.74529 1.90719 1.78653 1.21130 1.50344 0.89842 0.92017 0.91926 0.90447 0.89292 0.76928 0.91880 0.92565 0.90533 0.90537 0.76128 0.91788 0.91719 0.91921 0.87122 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.14 59.85 0.67 1.32 16 2 N -0.62 -5.84 3.33 -180.29 -0.60 -6.44 16 3 C 0.10 0.74 7.07 -3.12 -0.02 0.72 16 4 C 0.16 1.72 3.43 -66.30 -0.23 1.49 16 5 H 0.11 1.34 7.72 -51.93 -0.40 0.94 16 6 N -0.74 -9.24 5.14 -57.08 -0.29 -9.53 16 7 C 0.72 13.08 8.49 -86.91 -0.74 12.34 16 8 O -0.59 -13.16 16.41 5.29 0.09 -13.08 16 9 N -0.63 -11.99 3.33 -176.24 -0.59 -12.58 16 10 C 0.10 1.62 6.57 -2.52 -0.02 1.60 16 11 C -0.12 -2.16 6.23 -24.58 -0.15 -2.31 16 12 C 0.25 5.78 0.86 -89.93 -0.08 5.70 16 13 O -0.59 -14.37 13.09 -35.23 -0.46 -14.83 16 14 C -0.54 -13.64 8.10 -34.44 -0.28 -13.92 16 15 H 0.07 1.64 7.76 -52.48 -0.41 1.24 16 16 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 17 N -0.90 -23.39 10.98 55.43 0.61 -22.78 16 18 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.12 2.79 5.54 -3.07 -0.02 2.78 16 23 C -0.17 -2.00 6.59 -26.74 -0.18 -2.18 16 24 C 0.52 6.56 8.02 -10.86 -0.09 6.48 16 25 O -0.53 -8.68 17.35 5.56 0.10 -8.58 16 26 H 0.08 0.68 7.53 -51.93 -0.39 0.29 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.45 7.77 -51.93 -0.40 0.05 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.40 3.85 6.84 -40.82 -0.28 3.57 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.67 7.30 -51.93 -0.38 0.29 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 36 H 0.39 9.85 6.98 45.56 0.32 10.17 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.06 1.65 7.81 -51.93 -0.41 1.24 16 39 H 0.06 1.62 8.07 -51.93 -0.42 1.20 16 40 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.11 1.27 8.08 -51.93 -0.42 0.85 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -31.92 338.86 -7.56 -39.48 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -5.28 Total: 12.50 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: -1.22 Total: 15.70 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.87 Total: -51.32 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.28 Total: -36.48 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.92 -7.56 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.940 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds