Wall clock time and date at job start Fri Apr 10 2020 17:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46769 * 124.34673 * 2 1 4 4 C 1.54484 * 105.46784 * 197.03750 * 3 2 1 5 5 H 1.08999 * 111.00325 * 92.72346 * 4 3 2 6 6 N 1.46502 * 110.96213 * 216.46459 * 4 3 2 7 7 C 1.34778 * 119.99606 * 198.83339 * 6 4 3 8 8 O 1.21585 * 120.00055 * 0.02562 * 7 6 4 9 9 N 1.34782 * 120.00172 * 180.02562 * 7 6 4 10 10 C 1.47425 * 125.64189 * 0.02562 * 9 7 6 11 11 C 1.54918 * 104.82827 * 204.10422 * 10 9 7 12 12 C 1.55157 * 101.58155 * 322.99497 * 11 10 9 13 13 O 1.42894 * 110.71995 * 276.95544 * 12 11 10 14 14 C 1.50702 * 110.71903 * 153.86325 * 12 11 10 15 15 H 1.08003 * 120.00035 * 359.97438 * 14 12 11 16 16 C 1.37875 * 120.00014 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00096 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99940 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47222 * 60.00154 * 18 16 14 20 20 H 1.48498 * 109.47246 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47191 * 300.00078 * 18 16 14 22 22 C 1.47015 * 125.64929 * 179.97438 * 9 7 6 23 23 C 1.54625 * 101.76810 * 334.58181 * 4 3 2 24 24 C 1.34421 * 124.35023 * 180.02562 * 2 1 3 25 25 O 1.21281 * 124.93827 * 359.60808 * 24 2 1 26 26 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47326 * 299.95536 * 1 2 3 28 28 H 1.09004 * 109.46750 * 59.95264 * 1 2 3 29 29 H 1.08999 * 110.24181 * 78.03658 * 3 2 1 30 30 H 1.08994 * 110.24605 * 316.03479 * 3 2 1 31 31 H 0.96997 * 120.00739 * 18.83602 * 6 4 3 32 32 H 1.08999 * 110.36633 * 85.27695 * 10 9 7 33 33 H 1.08996 * 110.37033 * 322.94075 * 10 9 7 34 34 H 1.09001 * 111.00522 * 204.91555 * 11 10 9 35 35 H 1.09000 * 110.99891 * 81.06585 * 11 10 9 36 36 H 0.96698 * 114.00183 * 180.02562 * 13 12 11 37 37 H 0.97002 * 119.99826 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.88350 * 59.54436 * 22 9 7 39 39 H 1.08998 * 109.88602 * 298.38102 * 22 9 7 40 40 H 1.08996 * 110.48582 * 143.47649 * 23 4 3 41 41 H 1.08999 * 110.48966 * 266.12552 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7488 -0.4362 5 1 3.8271 0.8452 -1.5146 6 7 4.7418 1.4911 0.2791 7 6 5.9993 1.5240 -0.2048 8 8 6.2696 0.9380 -1.2353 9 7 6.9571 2.2064 0.4535 10 6 6.7687 2.9574 1.7080 11 6 7.9017 4.0139 1.7117 12 6 9.0731 3.2165 1.0798 13 8 9.7335 2.4212 2.0663 14 6 10.0494 4.1466 0.4068 15 1 9.8732 5.2122 0.4145 16 6 11.1675 3.6373 -0.2189 17 7 11.3818 2.3398 -0.2287 18 14 12.3772 4.7902 -1.0537 19 1 12.9272 5.7398 -0.0531 20 1 13.4850 3.9996 -1.6478 21 1 11.6807 5.5477 -2.1244 22 6 8.3630 2.3242 0.0400 23 6 3.6898 -0.7378 -0.0109 24 6 2.2235 -1.1098 -0.0005 25 8 1.7946 -2.2442 0.0058 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5131 0.8903 28 1 -0.3633 0.5146 -0.8896 29 1 2.3308 1.6427 1.0005 30 1 1.8982 1.9385 -0.7099 31 1 4.5261 1.9588 1.1010 32 1 6.8670 2.2929 2.5664 33 1 5.7944 3.4461 1.7150 34 1 8.1435 4.3239 2.7283 35 1 7.6367 4.8731 1.0955 36 1 10.4742 1.9032 1.7226 37 1 12.1683 1.9815 -0.6692 38 1 8.4221 2.7853 -0.9459 39 1 8.8271 1.3382 0.0187 40 1 4.2324 -1.3457 -0.7348 41 1 4.1197 -0.8531 0.9841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:14 Heat of formation + Delta-G solvation = -124.147515 kcal Electronic energy + Delta-G solvation = -24528.539729 eV Core-core repulsion = 20828.692455 eV Total energy + Delta-G solvation = -3699.847274 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80811 -40.93742 -39.15455 -37.71777 -36.07215 -35.48359 -34.14564 -32.63390 -31.33374 -29.56515 -28.59093 -27.50416 -26.60564 -24.34294 -22.73837 -21.40349 -21.29890 -20.52823 -19.25031 -18.89702 -17.96215 -17.70132 -17.18337 -16.75308 -16.65789 -16.32894 -16.12737 -15.30573 -15.14727 -14.78915 -14.74054 -14.62479 -14.57519 -14.26790 -13.85282 -13.46408 -13.35748 -13.28170 -13.19078 -12.81600 -12.81407 -12.51709 -12.31995 -12.30674 -12.25482 -12.04564 -11.37429 -11.19452 -11.14732 -10.61516 -10.28621 -10.25532 -9.79857 -9.40502 -8.25117 -6.40697 1.40641 1.43419 1.45110 1.51832 1.53968 2.00196 2.14667 2.39171 2.96119 3.01835 3.30090 3.48668 3.77287 3.85346 3.96773 4.12875 4.21240 4.39512 4.42848 4.43723 4.56774 4.65002 4.68729 4.75895 4.77297 4.85086 4.90410 5.07700 5.17989 5.26737 5.40682 5.44508 5.45567 5.51858 5.78371 5.94272 6.03511 6.17304 6.66036 7.00442 7.06686 7.31466 7.40767 7.56332 8.80670 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.033650 B = 0.003137 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.894883 B = 8922.714965 C = 9095.650615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.616 5.616 3 C 0.109 3.891 4 C 0.158 3.842 5 H 0.096 0.904 6 N -0.714 5.714 7 C 0.714 3.286 8 O -0.639 6.639 9 N -0.632 5.632 10 C 0.107 3.893 11 C -0.111 4.111 12 C 0.231 3.769 13 O -0.590 6.590 14 C -0.556 4.556 15 H 0.069 0.931 16 C 0.024 3.976 17 N -0.918 5.918 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.139 3.861 23 C -0.168 4.168 24 C 0.518 3.482 25 O -0.579 6.579 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.415 0.585 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.378 0.622 37 H 0.270 0.730 38 H 0.032 0.968 39 H 0.023 0.977 40 H 0.088 0.912 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.703 3.426 4.095 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.350 5.350 3 C -0.013 4.013 4 C 0.052 3.948 5 H 0.114 0.886 6 N -0.372 5.372 7 C 0.416 3.584 8 O -0.521 6.521 9 N -0.369 5.369 10 C -0.015 4.015 11 C -0.149 4.149 12 C 0.191 3.809 13 O -0.399 6.399 14 C -0.595 4.595 15 H 0.087 0.913 16 C -0.176 4.176 17 N -0.558 5.558 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.197 1.197 22 C 0.014 3.986 23 C -0.210 4.210 24 C 0.306 3.694 25 O -0.460 6.460 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.254 0.746 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.228 0.772 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.106 0.894 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.227 2.549 3.659 20.713 hybrid contribution 1.634 -0.151 -0.812 1.831 sum -18.593 2.398 2.847 18.962 Atomic orbital electron populations 1.21800 0.76074 1.03495 1.03935 1.48262 1.07724 1.06670 1.72344 1.22413 0.86952 0.86864 1.05117 1.21508 0.86818 0.88723 0.97798 0.88568 1.44699 1.06056 1.56853 1.29626 1.15658 0.81014 0.79220 0.82493 1.90880 1.82065 1.51942 1.27229 1.47852 1.09299 1.53024 1.26697 1.22446 1.00297 0.93407 0.85344 1.22735 0.93027 0.97080 1.02081 1.19725 0.89691 0.86987 0.84513 1.86057 1.50714 1.63580 1.39537 1.21860 1.07648 0.94348 1.35608 0.91276 1.25821 0.99520 0.96637 0.95656 1.69676 1.29021 1.12526 1.44582 0.85531 0.78142 0.78779 0.78731 1.19242 1.21199 1.19750 1.22377 0.78689 0.98656 0.98850 1.22818 0.93805 0.99089 1.05303 1.20982 0.89618 0.84356 0.74438 1.90691 1.79297 1.23077 1.52911 0.91619 0.89399 0.89721 0.87307 0.86360 0.74626 0.91144 0.87166 0.89287 0.89645 0.77168 0.92028 0.94997 0.95814 0.89359 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 11.14 127.77 1.42 2.36 16 2 N -0.62 -9.71 3.33 -842.89 -2.81 -12.52 16 3 C 0.11 1.13 7.07 86.83 0.61 1.75 16 4 C 0.16 3.07 3.43 46.05 0.16 3.23 16 5 H 0.10 2.23 7.72 -2.39 -0.02 2.21 16 6 N -0.71 -15.74 5.14 -452.75 -2.33 -18.07 16 7 C 0.71 25.44 8.49 179.05 1.52 26.96 16 8 O -0.64 -29.14 16.41 -3.98 -0.07 -29.20 16 9 N -0.63 -23.59 3.33 -829.75 -2.76 -26.35 16 10 C 0.11 3.01 6.57 86.86 0.57 3.58 16 11 C -0.11 -3.87 6.23 31.99 0.20 -3.67 16 12 C 0.23 10.77 0.86 -10.35 -0.01 10.77 16 13 O -0.59 -29.27 13.09 -148.98 -1.95 -31.22 16 14 C -0.56 -28.35 8.10 25.60 0.21 -28.14 16 15 H 0.07 3.39 7.76 -2.91 -0.02 3.37 16 16 C 0.02 1.25 5.28 84.65 0.45 1.69 16 17 N -0.92 -49.55 10.98 21.45 0.24 -49.31 16 18 Si 0.96 41.37 29.54 68.60 2.03 43.39 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 C 0.14 6.64 5.54 86.73 0.48 7.12 16 23 C -0.17 -3.92 6.59 30.59 0.20 -3.72 16 24 C 0.52 12.63 8.02 87.90 0.71 13.34 16 25 O -0.58 -19.22 17.35 -3.03 -0.05 -19.27 16 26 H 0.06 0.98 7.53 -2.39 -0.02 0.96 16 27 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.11 0.58 7.77 -2.39 -0.02 0.57 16 30 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.42 6.04 6.84 -92.71 -0.63 5.41 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 1.97 7.30 -2.39 -0.02 1.95 16 34 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.09 2.80 8.02 -2.39 -0.02 2.78 16 36 H 0.38 19.95 6.98 -74.06 -0.52 19.44 16 37 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.03 1.69 7.81 -2.39 -0.02 1.68 16 39 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 40 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.11 2.51 8.08 -2.39 -0.02 2.49 16 Total: -1.00 -74.42 338.86 -1.28 -75.69 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.09 Total: 31.59 kcal Atomic # 6 Polarization: 28.75 SS G_CDS: 6.52 Total: 35.27 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -7.66 Total: -106.26 kcal Atomic # 8 Polarization: -77.62 SS G_CDS: -2.07 Total: -79.69 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -74.42 -1.28 -75.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.453 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds