Wall clock time and date at job start Fri Apr 10 2020 17:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00169 * 2 1 4 4 N 1.46500 * 109.47467 * 124.99888 * 3 2 1 5 5 C 1.34773 * 120.00431 * 180.02562 * 4 3 2 6 6 O 1.21543 * 119.99926 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00099 * 179.72251 * 5 4 3 8 8 C 1.34777 * 120.00128 * 180.26998 * 7 5 4 9 9 O 1.21243 * 119.99675 * 0.02562 * 8 7 5 10 10 C 1.50695 * 120.00401 * 180.02562 * 8 7 5 11 11 N 1.46896 * 109.47269 * 180.02562 * 10 8 7 12 12 C 1.48527 * 111.00315 * 52.60108 * 11 10 8 13 13 C 1.54935 * 103.22844 * 159.72000 * 12 11 10 14 14 C 1.54599 * 102.92403 * 322.58785 * 13 12 11 15 15 O 1.42896 * 110.39300 * 263.00109 * 14 13 12 16 16 C 1.50695 * 110.31275 * 140.86701 * 14 13 12 17 17 H 1.07997 * 120.00582 * 244.28376 * 16 14 13 18 18 C 1.37886 * 119.99497 * 64.28492 * 16 14 13 19 19 N 1.31510 * 120.00323 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99781 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47193 * 90.00062 * 20 18 16 22 22 H 1.48500 * 109.47068 * 210.00162 * 20 18 16 23 23 H 1.48503 * 109.47141 * 329.99757 * 20 18 16 24 24 C 1.47903 * 110.99793 * 170.00177 * 11 10 8 25 25 H 1.08001 * 119.99839 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99926 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99839 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.47290 * 5.00076 * 3 2 1 29 29 H 1.08993 * 109.47358 * 245.00131 * 3 2 1 30 30 H 0.97000 * 119.99456 * 359.97438 * 4 3 2 31 31 H 0.97001 * 119.99727 * 0.27992 * 7 5 4 32 32 H 1.09008 * 109.46715 * 300.00409 * 10 8 7 33 33 H 1.08998 * 109.46954 * 60.00004 * 10 8 7 34 34 H 1.09003 * 110.66931 * 278.15790 * 12 11 10 35 35 H 1.08998 * 110.66645 * 41.28840 * 12 11 10 36 36 H 1.08996 * 110.73050 * 204.23032 * 13 12 11 37 37 H 1.09007 * 110.87728 * 81.01421 * 13 12 11 38 38 H 0.96704 * 113.99785 * 295.75835 * 15 14 13 39 39 H 0.96996 * 120.00465 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.91673 * 333.50299 * 24 11 10 41 41 H 1.08999 * 109.91977 * 94.60290 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3335 6 8 3.7144 3.3579 0.5767 7 7 4.6301 2.4359 2.3776 8 6 5.4107 3.5153 2.5828 9 8 5.3464 4.4622 1.8283 10 6 6.3636 3.5453 3.7499 11 7 7.0934 4.8201 3.7536 12 6 6.1558 5.9705 3.6935 13 6 7.0070 7.1499 4.2272 14 6 7.8478 6.4915 5.3451 15 8 7.2393 6.7091 6.6196 16 6 9.2513 7.0399 5.3360 17 1 10.0839 6.3894 5.1122 18 6 9.4726 8.3724 5.6133 19 7 8.4588 9.1644 5.8862 20 14 11.2123 9.0524 5.6013 21 1 11.5449 9.5371 4.2376 22 1 11.3103 10.1785 6.5644 23 1 12.1649 7.9823 5.9923 24 6 7.8589 4.9889 5.0078 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 3.0446 0.5747 1.7356 31 1 4.6814 1.6784 2.9813 32 1 5.8028 3.4452 4.6793 33 1 7.0715 2.7212 3.6622 34 1 5.8409 6.1569 2.6667 35 1 5.2927 5.7972 4.3362 36 1 6.3682 7.9329 4.6356 37 1 7.6517 7.5493 3.4442 38 1 7.2042 7.6383 6.8851 39 1 8.6145 10.1016 6.0817 40 1 7.3849 4.4246 5.8109 41 1 8.8834 4.6446 4.8668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:18 Heat of formation + Delta-G solvation = -70.217389 kcal Electronic energy + Delta-G solvation = -23982.200931 eV Core-core repulsion = 20284.692242 eV Total energy + Delta-G solvation = -3697.508689 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18563 -39.04598 -37.70660 -36.04316 -34.66315 -34.56041 -32.93578 -32.02243 -30.47518 -27.99571 -27.27431 -26.08060 -24.13653 -22.11912 -20.95635 -20.43090 -20.36923 -19.40193 -18.72971 -17.18311 -17.02369 -16.40080 -15.93590 -15.46930 -15.24395 -14.88524 -14.71219 -14.63648 -14.10100 -13.81640 -13.68526 -13.36081 -13.05323 -12.75339 -12.35792 -11.98835 -11.63941 -11.57369 -11.48203 -11.14344 -10.93446 -10.77775 -10.55885 -10.44056 -10.32488 -10.17452 -10.05393 -9.88246 -9.40876 -9.33505 -9.07315 -8.53764 -8.01681 -7.81943 -6.14535 -4.20439 1.52069 2.15226 2.36122 3.23694 3.28617 3.35215 3.38625 3.75818 4.29630 4.36820 4.57501 4.59761 4.64069 5.12114 5.13353 5.29807 5.33941 5.38230 5.39969 5.77642 5.93691 5.98272 6.02362 6.12029 6.18870 6.20214 6.31886 6.35216 6.41891 6.72683 6.96403 7.19561 7.32530 7.33463 7.57158 7.67279 7.70562 7.89490 8.13863 8.20595 8.25898 8.80667 9.45835 9.56408 10.93309 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.046993 B = 0.002608 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.693808 B =10731.924210 C =10779.682939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.177 4.177 3 C 0.162 3.838 4 N -0.739 5.739 5 C 0.693 3.307 6 O -0.530 6.530 7 N -0.694 5.694 8 C 0.513 3.487 9 O -0.442 6.442 10 C 0.031 3.969 11 N -0.499 5.499 12 C 0.027 3.973 13 C -0.119 4.119 14 C 0.243 3.757 15 O -0.596 6.596 16 C -0.527 4.527 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.899 5.899 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.054 3.946 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.398 0.602 31 H 0.407 0.593 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.026 0.974 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.384 0.616 39 H 0.267 0.733 40 H 0.038 0.962 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.841 -19.760 -6.092 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 C 0.039 3.961 4 N -0.397 5.397 5 C 0.393 3.607 6 O -0.401 6.401 7 N -0.361 5.361 8 C 0.299 3.701 9 O -0.308 6.308 10 C -0.101 4.101 11 N -0.225 5.225 12 C -0.100 4.100 13 C -0.157 4.157 14 C 0.202 3.798 15 O -0.406 6.406 16 C -0.566 4.566 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.073 4.073 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.232 0.768 31 H 0.242 0.758 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.236 0.764 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.663 -18.689 -7.710 23.855 hybrid contribution 0.396 0.019 1.335 1.393 sum -12.267 -18.670 -6.375 23.231 Atomic orbital electron populations 1.24018 0.95785 1.02558 0.97743 1.22988 0.96213 0.98008 1.02367 1.20318 0.91217 0.95612 0.88980 1.45224 1.42692 1.19272 1.32526 1.16162 0.79300 0.83551 0.81687 1.91087 1.68634 1.34605 1.45776 1.44279 1.40361 1.21931 1.29529 1.21061 0.80307 0.81304 0.87459 1.90803 1.63164 1.32525 1.44283 1.22264 0.95732 0.97732 0.94354 1.64838 1.21943 0.99501 1.36176 1.23574 0.93499 0.91452 1.01503 1.22997 0.97666 0.95441 0.99641 1.19348 0.91126 0.88318 0.80958 1.86054 1.83136 1.33292 1.38143 1.21682 0.92707 0.94596 1.47565 0.91932 1.25023 0.97543 0.96765 0.94121 1.69616 1.30338 1.05975 1.48065 0.86447 0.84281 0.78503 0.77877 1.20528 1.21213 1.19829 1.22940 0.97895 0.98596 0.87844 0.88033 0.87794 0.86596 0.90879 0.90428 0.76766 0.75817 0.91572 0.87623 0.88801 0.95593 0.91768 0.91322 0.76393 0.92352 0.94409 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 14.32 29.01 0.42 -0.32 16 2 C -0.18 -0.89 9.63 -36.03 -0.35 -1.24 16 3 C 0.16 1.25 6.11 -5.19 -0.03 1.22 16 4 N -0.74 -5.94 5.55 -66.42 -0.37 -6.30 16 5 C 0.69 8.94 8.50 -86.92 -0.74 8.20 16 6 O -0.53 -9.89 14.74 -18.48 -0.27 -10.17 16 7 N -0.69 -7.56 5.24 -15.78 -0.08 -7.65 16 8 C 0.51 7.96 7.48 -10.99 -0.08 7.87 16 9 O -0.44 -9.22 11.92 -18.22 -0.22 -9.44 16 10 C 0.03 0.45 5.52 -4.98 -0.03 0.42 16 11 N -0.50 -9.98 5.26 -231.90 -1.22 -11.20 16 12 C 0.03 0.58 5.30 -1.90 -0.01 0.57 16 13 C -0.12 -2.94 5.50 -24.87 -0.14 -3.07 16 14 C 0.24 6.16 0.99 -90.41 -0.09 6.07 16 15 O -0.60 -15.69 12.93 -35.23 -0.46 -16.14 16 16 C -0.53 -14.39 8.10 -34.44 -0.28 -14.67 16 17 H 0.06 1.69 7.35 -52.49 -0.39 1.30 16 18 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 19 N -0.90 -24.62 10.88 55.43 0.60 -24.02 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.05 1.17 6.16 -2.75 -0.02 1.15 16 25 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 26 H 0.10 0.33 8.06 -52.49 -0.42 -0.09 16 27 H 0.12 0.43 8.06 -52.49 -0.42 0.00 16 28 H 0.07 0.64 7.79 -51.92 -0.40 0.24 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.40 1.75 8.48 -40.82 -0.35 1.41 16 31 H 0.41 2.30 8.71 -40.82 -0.36 1.95 16 32 H 0.07 0.85 7.81 -51.92 -0.41 0.45 16 33 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 2.15 5.97 -51.93 -0.31 1.84 16 35 H 0.03 0.55 8.02 -51.93 -0.42 0.13 16 36 H 0.06 1.64 8.06 -51.93 -0.42 1.22 16 37 H 0.07 1.82 7.86 -51.92 -0.41 1.41 16 38 H 0.38 10.35 7.05 45.56 0.32 10.67 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.04 0.77 7.39 -51.93 -0.38 0.38 16 41 H 0.08 1.75 7.40 -51.93 -0.38 1.37 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -35.60 340.69 -8.47 -44.08 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.13 Total: 11.63 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.44 Total: 7.93 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -1.07 Total: -49.16 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.95 Total: -35.75 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.60 -8.47 -44.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.140 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds