Wall clock time and date at job start Fri Apr 10 2020 17:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00169 * 2 1 4 4 N 1.46500 * 109.47467 * 124.99888 * 3 2 1 5 5 C 1.34773 * 120.00431 * 180.02562 * 4 3 2 6 6 O 1.21543 * 119.99926 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00099 * 179.72251 * 5 4 3 8 8 C 1.34777 * 120.00128 * 180.26998 * 7 5 4 9 9 O 1.21243 * 119.99675 * 0.02562 * 8 7 5 10 10 C 1.50695 * 120.00401 * 180.02562 * 8 7 5 11 11 N 1.46896 * 109.47269 * 180.02562 * 10 8 7 12 12 C 1.48527 * 111.00315 * 52.60108 * 11 10 8 13 13 C 1.54935 * 103.22844 * 159.72000 * 12 11 10 14 14 C 1.54599 * 102.92403 * 322.58785 * 13 12 11 15 15 O 1.42896 * 110.39300 * 263.00109 * 14 13 12 16 16 C 1.50695 * 110.31275 * 140.86701 * 14 13 12 17 17 H 1.07997 * 120.00582 * 244.28376 * 16 14 13 18 18 C 1.37886 * 119.99497 * 64.28492 * 16 14 13 19 19 N 1.31510 * 120.00323 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99781 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47193 * 90.00062 * 20 18 16 22 22 H 1.48500 * 109.47068 * 210.00162 * 20 18 16 23 23 H 1.48503 * 109.47141 * 329.99757 * 20 18 16 24 24 C 1.47903 * 110.99793 * 170.00177 * 11 10 8 25 25 H 1.08001 * 119.99839 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99926 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99839 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.47290 * 5.00076 * 3 2 1 29 29 H 1.08993 * 109.47358 * 245.00131 * 3 2 1 30 30 H 0.97000 * 119.99456 * 359.97438 * 4 3 2 31 31 H 0.97001 * 119.99727 * 0.27992 * 7 5 4 32 32 H 1.09008 * 109.46715 * 300.00409 * 10 8 7 33 33 H 1.08998 * 109.46954 * 60.00004 * 10 8 7 34 34 H 1.09003 * 110.66931 * 278.15790 * 12 11 10 35 35 H 1.08998 * 110.66645 * 41.28840 * 12 11 10 36 36 H 1.08996 * 110.73050 * 204.23032 * 13 12 11 37 37 H 1.09007 * 110.87728 * 81.01421 * 13 12 11 38 38 H 0.96704 * 113.99785 * 295.75835 * 15 14 13 39 39 H 0.96996 * 120.00465 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.91673 * 333.50299 * 24 11 10 41 41 H 1.08999 * 109.91977 * 94.60290 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3335 6 8 3.7144 3.3579 0.5767 7 7 4.6301 2.4359 2.3776 8 6 5.4107 3.5153 2.5828 9 8 5.3464 4.4622 1.8283 10 6 6.3636 3.5453 3.7499 11 7 7.0934 4.8201 3.7536 12 6 6.1558 5.9705 3.6935 13 6 7.0070 7.1499 4.2272 14 6 7.8478 6.4915 5.3451 15 8 7.2393 6.7091 6.6196 16 6 9.2513 7.0399 5.3360 17 1 10.0839 6.3894 5.1122 18 6 9.4726 8.3724 5.6133 19 7 8.4588 9.1644 5.8862 20 14 11.2123 9.0524 5.6013 21 1 11.5449 9.5371 4.2376 22 1 11.3103 10.1785 6.5644 23 1 12.1649 7.9823 5.9923 24 6 7.8589 4.9889 5.0078 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 3.0446 0.5747 1.7356 31 1 4.6814 1.6784 2.9813 32 1 5.8028 3.4452 4.6793 33 1 7.0715 2.7212 3.6622 34 1 5.8409 6.1569 2.6667 35 1 5.2927 5.7972 4.3362 36 1 6.3682 7.9329 4.6356 37 1 7.6517 7.5493 3.4442 38 1 7.2042 7.6383 6.8851 39 1 8.6145 10.1016 6.0817 40 1 7.3849 4.4246 5.8109 41 1 8.8834 4.6446 4.8668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592144589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:18 Heat of formation + Delta-G solvation = -100.772196 kcal Electronic energy + Delta-G solvation = -23983.525887 eV Core-core repulsion = 20284.692242 eV Total energy + Delta-G solvation = -3698.833644 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.29332 -40.43048 -39.21090 -36.86487 -36.37121 -35.77322 -34.10475 -33.59533 -32.11033 -29.82722 -28.55626 -27.17938 -25.89092 -23.30621 -22.13742 -21.72531 -21.29011 -21.10754 -19.61040 -19.10542 -18.24111 -17.40512 -16.95439 -16.88499 -16.73563 -16.53222 -15.92663 -15.80056 -15.69978 -15.13758 -14.84652 -14.57377 -14.21046 -14.14097 -13.82913 -13.44122 -13.35402 -13.13865 -12.95983 -12.66834 -12.45489 -12.31838 -12.13621 -12.05776 -11.98863 -11.88077 -11.25840 -11.13290 -10.77815 -10.60971 -10.50724 -10.11263 -10.03051 -9.36228 -8.19746 -6.33050 0.96814 0.99995 1.42083 1.43700 1.53326 1.56744 2.18995 2.40818 2.85877 3.05376 3.15165 3.66190 3.83961 3.90508 4.16350 4.24152 4.27501 4.32035 4.45400 4.51564 4.54950 4.64815 4.68578 4.85805 4.98849 5.08315 5.11446 5.22780 5.34093 5.39975 5.49710 5.59498 5.65722 5.77435 5.78206 5.91095 6.11589 6.16277 6.57960 6.71993 7.11698 7.32156 7.36345 7.44857 8.86532 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.046993 B = 0.002608 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.693808 B =10731.924210 C =10779.682939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.178 4.178 3 C 0.159 3.841 4 N -0.712 5.712 5 C 0.689 3.311 6 O -0.592 6.592 7 N -0.670 5.670 8 C 0.517 3.483 9 O -0.503 6.503 10 C 0.031 3.969 11 N -0.513 5.513 12 C 0.045 3.955 13 C -0.113 4.113 14 C 0.226 3.774 15 O -0.599 6.599 16 C -0.550 4.550 17 H 0.060 0.940 18 C 0.022 3.978 19 N -0.918 5.918 20 Si 0.962 3.038 21 H -0.280 1.280 22 H -0.281 1.281 23 H -0.267 1.267 24 C 0.065 3.935 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.137 0.863 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.420 0.580 31 H 0.435 0.565 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.378 0.622 39 H 0.268 0.732 40 H 0.055 0.945 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.950 -22.849 -5.410 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C 0.035 3.965 4 N -0.371 5.371 5 C 0.389 3.611 6 O -0.468 6.468 7 N -0.338 5.338 8 C 0.304 3.696 9 O -0.373 6.373 10 C -0.100 4.100 11 N -0.238 5.238 12 C -0.083 4.083 13 C -0.152 4.152 14 C 0.186 3.814 15 O -0.408 6.408 16 C -0.588 4.588 17 H 0.078 0.922 18 C -0.178 4.178 19 N -0.559 5.559 20 Si 0.787 3.213 21 H -0.206 1.206 22 H -0.207 1.207 23 H -0.191 1.191 24 C -0.062 4.062 25 H 0.114 0.886 26 H 0.141 0.859 27 H 0.154 0.846 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.258 0.742 31 H 0.275 0.725 32 H 0.113 0.887 33 H 0.166 0.834 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.228 0.772 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.798 -21.908 -6.977 26.314 hybrid contribution 0.337 0.906 1.103 1.467 sum -12.461 -21.002 -5.874 25.117 Atomic orbital electron populations 1.24202 0.95728 1.03273 0.96400 1.22897 0.96198 0.97073 1.03439 1.20372 0.90853 0.96985 0.88247 1.45046 1.41006 1.18429 1.32596 1.16426 0.79626 0.83733 0.81340 1.91060 1.70479 1.37232 1.47983 1.43844 1.38833 1.21783 1.29383 1.21289 0.80231 0.81241 0.86846 1.90800 1.65072 1.35019 1.46406 1.22458 0.96559 0.95951 0.94989 1.64700 1.22531 1.01125 1.35451 1.23268 0.93290 0.91240 1.00481 1.22808 0.97384 0.96157 0.98872 1.19608 0.90288 0.91073 0.80425 1.86042 1.83251 1.32722 1.38782 1.21989 0.93676 0.95138 1.48045 0.92184 1.25763 1.01098 0.97088 0.93811 1.69710 1.31868 1.06112 1.48185 0.85501 0.80121 0.77951 0.77685 1.20625 1.20665 1.19147 1.22755 0.98689 0.95846 0.88925 0.88589 0.85873 0.84550 0.92378 0.91666 0.74172 0.72475 0.88659 0.83404 0.90124 0.95063 0.93727 0.94135 0.77185 0.92267 0.92659 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 14.32 67.78 0.97 -0.11 16 2 C -0.18 -1.37 9.63 25.64 0.25 -1.12 16 3 C 0.16 2.32 6.11 85.63 0.52 2.84 16 4 N -0.71 -10.07 5.55 -482.35 -2.68 -12.75 16 5 C 0.69 17.05 8.50 179.06 1.52 18.57 16 6 O -0.59 -22.63 14.74 18.91 0.28 -22.35 16 7 N -0.67 -12.99 5.24 -440.52 -2.31 -15.30 16 8 C 0.52 15.19 7.48 87.66 0.66 15.85 16 9 O -0.50 -21.23 11.92 19.85 0.24 -20.99 16 10 C 0.03 0.80 5.52 85.56 0.47 1.28 16 11 N -0.51 -19.76 5.26 -887.58 -4.67 -24.43 16 12 C 0.04 1.96 5.30 86.65 0.46 2.42 16 13 C -0.11 -5.78 5.50 31.80 0.17 -5.61 16 14 C 0.23 11.50 0.99 -10.66 -0.01 11.49 16 15 O -0.60 -31.59 12.93 -148.98 -1.93 -33.51 16 16 C -0.55 -30.22 8.10 25.60 0.21 -30.02 16 17 H 0.06 3.24 7.35 -2.91 -0.02 3.22 16 18 C 0.02 1.19 5.26 84.66 0.45 1.64 16 19 N -0.92 -51.10 10.88 21.45 0.23 -50.86 16 20 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.07 2.70 6.16 86.45 0.53 3.23 16 25 H 0.10 0.76 7.84 -2.91 -0.02 0.74 16 26 H 0.12 0.41 8.06 -2.91 -0.02 0.38 16 27 H 0.14 0.53 8.06 -2.91 -0.02 0.51 16 28 H 0.06 1.03 7.79 -2.38 -0.02 1.02 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.42 2.27 8.48 -92.71 -0.79 1.48 16 31 H 0.44 3.15 8.71 -92.71 -0.81 2.35 16 32 H 0.10 2.01 7.81 -2.38 -0.02 1.99 16 33 H 0.15 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.08 3.82 5.97 -2.39 -0.01 3.80 16 35 H 0.03 1.32 8.02 -2.39 -0.02 1.30 16 36 H 0.04 2.38 8.06 -2.39 -0.02 2.36 16 37 H 0.04 2.23 7.86 -2.38 -0.02 2.22 16 38 H 0.38 20.74 7.05 -74.05 -0.52 20.21 16 39 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.06 2.07 7.39 -2.39 -0.02 2.06 16 41 H 0.09 3.47 7.40 -2.39 -0.02 3.45 16 Total: -1.00 -80.93 340.69 -3.65 -84.58 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -1.04 Total: 29.58 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 6.20 Total: 20.47 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -9.42 Total: -103.34 kcal Atomic # 8 Polarization: -75.44 SS G_CDS: -1.41 Total: -76.85 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -80.93 -3.65 -84.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.192 kcal (2) G-P(sol) polarization free energy of solvation -80.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds