Wall clock time and date at job start Fri Apr 10 2020 17:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48504 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47514 * 299.99942 * 3 2 1 6 6 H 1.48506 * 109.46800 * 60.00047 * 3 2 1 7 7 C 1.37873 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00375 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88739 * 303.88601 * 9 7 2 11 11 C 1.55163 * 111.03562 * 67.78508 * 9 7 2 12 12 C 1.54332 * 103.01946 * 153.39702 * 11 9 7 13 13 N 1.47022 * 107.26760 * 338.14210 * 12 11 9 14 14 C 1.34775 * 125.64759 * 178.84954 * 13 12 11 15 15 O 1.21283 * 119.99688 * 184.07291 * 14 13 12 16 16 C 1.50696 * 120.00293 * 4.07573 * 14 13 12 17 17 H 1.09002 * 109.46818 * 26.24835 * 16 14 13 18 18 O 1.42905 * 109.47190 * 146.24173 * 16 14 13 19 19 C 1.52998 * 109.47222 * 266.24786 * 16 14 13 20 20 C 1.53002 * 109.47273 * 182.64653 * 19 16 14 21 21 C 1.52998 * 109.47273 * 179.97438 * 20 19 16 22 22 C 1.52999 * 109.47342 * 59.99582 * 21 20 19 23 23 C 1.52997 * 109.46977 * 300.00361 * 22 21 20 24 24 C 1.52997 * 109.47619 * 59.99966 * 23 22 21 25 25 C 1.47422 * 108.70320 * 358.58737 * 13 12 11 26 26 H 0.96997 * 119.99578 * 0.02562 * 1 2 3 27 27 H 0.96700 * 113.99980 * 56.11161 * 10 9 7 28 28 H 1.08993 * 110.71792 * 271.95532 * 11 9 7 29 29 H 1.09001 * 110.71846 * 35.23119 * 11 9 7 30 30 H 1.09004 * 109.99419 * 218.66631 * 12 11 9 31 31 H 1.08999 * 109.78051 * 97.49825 * 12 11 9 32 32 H 0.96700 * 113.99893 * 60.00498 * 18 16 14 33 33 H 1.09001 * 109.46980 * 302.64155 * 19 16 14 34 34 H 1.08998 * 109.47088 * 300.00017 * 20 19 16 35 35 H 1.09001 * 109.46924 * 59.99324 * 20 19 16 36 36 H 1.08994 * 109.46863 * 180.02562 * 21 20 19 37 37 H 1.09005 * 109.46514 * 299.99663 * 21 20 19 38 38 H 1.08995 * 109.46912 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.46674 * 60.00195 * 22 21 20 40 40 H 1.08998 * 109.47283 * 299.99461 * 23 22 21 41 41 H 1.09007 * 109.47126 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.47792 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.47206 * 59.99447 * 24 23 22 44 44 H 1.08993 * 110.36866 * 143.19552 * 25 13 12 45 45 H 1.09003 * 110.36677 * 265.41112 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.3522 -2.5685 1.1081 11 6 0.4979 -2.7074 -1.3410 12 6 0.3997 -4.2438 -1.4496 13 7 1.4583 -4.8098 -0.6007 14 6 1.6920 -6.1230 -0.4073 15 8 2.5486 -6.4777 0.3746 16 6 0.8890 -7.1505 -1.1625 17 1 0.5349 -6.7186 -2.0986 18 8 1.7108 -8.2856 -1.4425 19 6 -0.3091 -7.5846 -0.3157 20 6 -1.0872 -8.6754 -1.0544 21 6 -2.2849 -9.1100 -0.2073 22 6 -3.1994 -7.9080 0.0375 23 6 -2.4212 -6.8173 0.7761 24 6 -1.2236 -6.3826 -0.0709 25 6 2.2258 -3.7031 -0.0011 26 1 -0.4849 0.8401 -0.0004 27 1 -0.2773 -1.8356 1.1505 28 1 -0.4938 -2.2572 -1.3000 29 1 1.0728 -2.3016 -2.1734 30 1 0.5480 -4.5546 -2.4838 31 1 -0.5762 -4.5769 -1.0966 32 1 2.0617 -8.7212 -0.6538 33 1 0.0431 -7.9733 0.6398 34 1 -1.4394 -8.2868 -2.0099 35 1 -0.4358 -9.5318 -1.2284 36 1 -2.8390 -9.8874 -0.7333 37 1 -1.9323 -9.4988 0.7480 38 1 -4.0529 -8.2178 0.6406 39 1 -3.5520 -7.5193 -0.9178 40 1 -2.0687 -7.2061 1.7315 41 1 -3.0726 -5.9608 0.9502 42 1 -0.6694 -5.6053 0.4551 43 1 -1.5761 -5.9939 -1.0262 44 1 2.5197 -3.9538 1.0181 45 1 3.1056 -3.4807 -0.6051 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:23 Heat of formation + Delta-G solvation = -157.744265 kcal Electronic energy + Delta-G solvation = -26077.006246 eV Core-core repulsion = 22479.242451 eV Total energy + Delta-G solvation = -3597.763795 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32023 -38.36667 -37.40568 -35.89356 -34.39986 -32.18074 -31.72275 -30.76089 -29.86005 -28.38897 -26.64336 -24.82717 -22.68333 -22.47469 -21.63773 -20.00270 -19.71864 -19.02748 -17.45972 -17.02153 -16.50136 -15.99709 -15.03716 -14.84103 -14.66891 -14.57871 -14.28340 -14.21999 -13.74993 -13.58474 -13.04575 -12.94908 -12.43254 -12.39050 -12.21729 -12.12829 -11.80824 -11.66132 -11.47243 -11.35877 -11.22885 -11.10709 -10.91067 -10.90760 -10.59628 -10.50320 -10.42124 -10.16841 -10.03834 -9.97942 -9.47695 -9.11297 -8.72110 -8.25226 -8.02399 -6.34496 -4.41973 2.90761 3.15659 3.25027 3.29094 3.45395 4.22726 4.34317 4.54377 4.66461 4.74425 4.85966 4.95798 5.04518 5.20861 5.26857 5.40495 5.44489 5.47839 5.51376 5.53773 5.64171 5.71746 5.81251 5.84052 5.96041 6.02350 6.08697 6.10900 6.12399 6.22206 6.27084 6.37673 6.40452 6.42086 6.60913 6.82739 6.91360 7.25396 7.28081 7.53488 7.69387 7.94433 8.06693 8.51668 8.61053 9.27279 9.43110 10.73252 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023103 B = 0.004364 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.669576 B = 6414.720607 C = 7170.032746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.251 3.749 10 O -0.584 6.584 11 C -0.139 4.139 12 C 0.081 3.919 13 N -0.598 5.598 14 C 0.499 3.501 15 O -0.556 6.556 16 C 0.100 3.900 17 H 0.114 0.886 18 O -0.543 6.543 19 C -0.108 4.108 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.126 4.126 25 C 0.117 3.883 26 H 0.269 0.731 27 H 0.386 0.614 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.382 0.618 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -12.774 -3.239 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.210 3.790 10 O -0.394 6.394 11 C -0.177 4.177 12 C -0.041 4.041 13 N -0.331 5.331 14 C 0.287 3.713 15 O -0.435 6.435 16 C 0.037 3.963 17 H 0.132 0.868 18 O -0.348 6.348 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.005 4.005 26 H 0.079 0.921 27 H 0.238 0.762 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.231 0.769 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.917 -13.313 -3.318 14.941 hybrid contribution 0.213 1.473 0.324 1.523 sum -5.704 -11.840 -2.994 13.479 Atomic orbital electron populations 1.69567 1.05992 1.27676 1.50530 1.24981 0.95014 0.99567 0.93382 0.86350 0.80173 0.82648 0.77749 1.19565 1.20787 1.20736 1.21529 0.93851 0.90231 1.51769 0.91611 1.19550 0.85997 0.90731 0.82720 1.86094 1.51024 1.52739 1.49545 1.23205 1.03085 0.90002 1.01454 1.22577 0.91191 0.97423 0.92921 1.48632 1.32825 1.04906 1.46770 1.21032 0.84448 0.82787 0.83081 1.90653 1.35528 1.80104 1.37234 1.21927 0.89348 0.85684 0.99298 0.86804 1.86540 1.68553 1.42973 1.36755 1.21749 0.94580 0.97128 0.99243 1.21483 0.96429 0.98083 0.98422 1.21533 0.96457 0.97554 1.00067 1.21560 0.97823 0.95836 1.00552 1.21487 0.96835 0.98416 0.98634 1.21878 0.96457 0.97166 1.00807 1.22415 0.94546 0.85403 0.98135 0.92110 0.76241 0.89800 0.91452 0.92914 0.90715 0.76907 0.90401 0.91823 0.91296 0.92128 0.92135 0.92298 0.91993 0.92114 0.91606 0.90083 0.91262 0.91077 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 10.79 55.43 0.60 -21.96 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 3 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.67 8.25 -34.44 -0.28 -13.95 16 8 H 0.07 1.68 7.77 -52.49 -0.41 1.28 16 9 C 0.25 5.89 0.89 -89.62 -0.08 5.81 16 10 O -0.58 -14.50 13.18 -35.23 -0.46 -14.96 16 11 C -0.14 -2.87 5.64 -24.89 -0.14 -3.01 16 12 C 0.08 1.40 5.63 -3.06 -0.02 1.39 16 13 N -0.60 -11.53 2.91 -170.52 -0.50 -12.03 16 14 C 0.50 9.27 6.17 -10.99 -0.07 9.21 16 15 O -0.56 -12.05 16.72 -11.62 -0.19 -12.24 16 16 C 0.10 1.43 2.66 -27.89 -0.07 1.36 16 17 H 0.11 1.53 7.00 -51.93 -0.36 1.17 16 18 O -0.54 -7.63 12.45 -52.40 -0.65 -8.28 16 19 C -0.11 -1.34 1.94 -90.62 -0.18 -1.51 16 20 C -0.11 -1.10 5.03 -26.73 -0.13 -1.23 16 21 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16 22 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 23 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 24 C -0.13 -1.63 3.42 -26.73 -0.09 -1.73 16 25 C 0.12 2.58 6.10 -2.53 -0.02 2.56 16 26 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 27 H 0.39 9.70 6.93 45.56 0.32 10.02 16 28 H 0.08 1.80 7.85 -51.93 -0.41 1.40 16 29 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 30 H 0.05 0.79 7.75 -51.93 -0.40 0.39 16 31 H 0.07 1.19 4.15 -51.93 -0.22 0.98 16 32 H 0.38 4.64 8.64 45.56 0.39 5.04 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.70 7.61 -51.93 -0.40 0.30 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.32 6.00 -51.93 -0.31 1.01 16 43 H 0.07 0.85 6.83 -51.93 -0.35 0.49 16 44 H 0.07 1.69 8.00 -51.93 -0.42 1.27 16 45 H 0.07 1.53 8.02 -51.93 -0.42 1.11 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -27.94 343.73 -8.61 -36.56 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -5.91 Total: 16.33 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.65 Total: -3.43 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.10 Total: -33.98 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.31 Total: -35.49 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.94 -8.61 -36.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.188 kcal (2) G-P(sol) polarization free energy of solvation -27.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds