Wall clock time and date at job start Fri Apr 10 2020 17:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99442 * 2 1 4 4 H 1.48504 * 109.47235 * 269.99956 * 3 2 1 5 5 H 1.48493 * 109.47376 * 30.00409 * 3 2 1 6 6 H 1.48500 * 109.47274 * 150.00456 * 3 2 1 7 7 C 1.37875 * 120.00775 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99548 * 0.27332 * 7 2 1 10 10 O 1.42905 * 110.88481 * 59.02383 * 9 7 2 11 11 C 1.55152 * 111.00130 * 295.14546 * 9 7 2 12 12 C 1.54373 * 102.91789 * 206.45410 * 11 9 7 13 13 N 1.47022 * 107.28985 * 22.13404 * 12 11 9 14 14 C 1.34779 * 125.65099 * 181.12470 * 13 12 11 15 15 O 1.21283 * 119.99625 * 174.77135 * 14 13 12 16 16 C 1.50693 * 119.99923 * 354.77233 * 14 13 12 17 17 H 1.09003 * 109.47187 * 49.83515 * 16 14 13 18 18 O 1.42897 * 109.47066 * 169.83032 * 16 14 13 19 19 C 1.52997 * 109.47482 * 289.83415 * 16 14 13 20 20 C 1.53000 * 109.47188 * 294.58005 * 19 16 14 21 21 C 1.52998 * 109.47560 * 179.97438 * 20 19 16 22 22 C 1.52998 * 109.46928 * 59.99777 * 21 20 19 23 23 C 1.52998 * 109.47128 * 299.99903 * 22 21 20 24 24 C 1.52999 * 109.47113 * 60.00616 * 23 22 21 25 25 C 1.47426 * 108.69946 * 1.09805 * 13 12 11 26 26 H 0.97001 * 120.00466 * 359.97438 * 1 2 3 27 27 H 0.96696 * 114.00178 * 300.70120 * 10 9 7 28 28 H 1.09001 * 110.71915 * 324.78386 * 11 9 7 29 29 H 1.08998 * 110.72621 * 88.06004 * 11 9 7 30 30 H 1.09005 * 109.84591 * 262.73238 * 12 11 9 31 31 H 1.09004 * 109.90496 * 141.57538 * 12 11 9 32 32 H 0.96703 * 113.99906 * 60.00641 * 18 16 14 33 33 H 1.08997 * 109.47220 * 54.57598 * 19 16 14 34 34 H 1.09001 * 109.47176 * 300.00032 * 20 19 16 35 35 H 1.08997 * 109.46853 * 59.99246 * 20 19 16 36 36 H 1.09001 * 109.46917 * 300.00209 * 21 20 19 37 37 H 1.08993 * 109.47324 * 180.02562 * 21 20 19 38 38 H 1.09006 * 109.46968 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47306 * 60.00096 * 22 21 20 40 40 H 1.09001 * 109.47653 * 300.00141 * 23 22 21 41 41 H 1.09004 * 109.47344 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.47680 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.47248 * 59.99278 * 24 23 22 44 44 H 1.09007 * 110.36397 * 217.03018 * 25 13 12 45 45 H 1.09000 * 110.36986 * 94.71274 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.6999 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0073 10 8 0.4061 -2.5935 -1.1559 11 6 0.4348 -2.6767 1.3000 12 6 0.3282 -4.2109 1.4346 13 7 1.4285 -4.7955 0.6541 14 6 1.6695 -6.1126 0.5007 15 8 2.5513 -6.4850 -0.2441 16 6 0.8433 -7.1226 1.2545 17 1 -0.2151 -6.8991 1.1202 18 8 1.1205 -8.4325 0.7554 19 6 1.1931 -7.0592 2.7426 20 6 2.6430 -7.5038 2.9451 21 6 2.9931 -7.4398 4.4331 22 6 2.0613 -8.3665 5.2165 23 6 0.6115 -7.9218 5.0141 24 6 0.2613 -7.9859 3.5261 25 6 2.2241 -3.7022 0.0666 26 1 -0.4851 0.8400 0.0004 27 1 -0.2525 -1.8884 -1.2186 28 1 0.9695 -2.2515 2.1493 29 1 -0.5537 -2.2280 1.2014 30 1 -0.6287 -4.5515 1.0390 31 1 0.4225 -4.4989 2.4817 32 1 2.0460 -8.6990 0.8426 33 1 1.0733 -6.0367 3.1007 34 1 2.7629 -8.5263 2.5869 35 1 3.3068 -6.8434 2.3872 36 1 2.8734 -6.4172 4.7908 37 1 4.0261 -7.7561 4.5772 38 1 2.3105 -8.3206 6.2767 39 1 2.1810 -9.3892 4.8588 40 1 0.4917 -6.8992 5.3719 41 1 -0.0524 -8.5823 5.5719 42 1 -0.7718 -7.6695 3.3819 43 1 0.3811 -9.0086 3.1684 44 1 2.5656 -3.9758 -0.9318 45 1 3.0735 -3.4646 0.7070 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:25 Heat of formation + Delta-G solvation = -161.260533 kcal Electronic energy + Delta-G solvation = -25850.365342 eV Core-core repulsion = 22252.449070 eV Total energy + Delta-G solvation = -3597.916272 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34433 -38.53055 -37.32451 -35.78712 -34.38052 -32.22031 -31.63281 -30.88723 -29.82591 -28.47643 -26.76844 -24.78314 -22.94951 -22.51797 -21.54371 -19.87458 -19.76134 -19.07138 -17.37863 -17.15495 -16.48921 -15.66059 -15.31679 -15.00361 -14.98010 -14.42837 -14.36118 -14.25122 -13.85862 -13.61424 -13.18979 -12.82829 -12.47254 -12.40706 -12.28918 -12.06368 -11.91383 -11.56529 -11.48218 -11.36511 -11.27318 -11.17552 -10.99651 -10.90814 -10.71574 -10.51030 -10.45517 -10.30253 -10.08847 -10.06924 -9.47219 -9.09047 -8.71511 -8.25826 -8.04385 -6.33304 -4.41305 2.93700 3.17387 3.24959 3.27445 3.45849 4.23090 4.31456 4.50033 4.55106 4.59897 4.83988 4.96060 4.99380 5.13255 5.18757 5.27286 5.35937 5.39480 5.48647 5.51478 5.56270 5.68178 5.72792 5.80792 5.89784 5.93160 6.00012 6.02547 6.04630 6.12185 6.18427 6.23091 6.36346 6.39117 6.59995 6.82458 6.90578 7.24610 7.28255 7.54179 7.69147 7.95810 8.07234 8.53387 8.61636 9.27464 9.39325 10.74342 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.004045 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.239543 B = 6920.310671 C = 7317.393090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.137 4.137 12 C 0.095 3.905 13 N -0.602 5.602 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.100 3.900 17 H 0.118 0.882 18 O -0.539 6.539 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.108 4.108 25 C 0.118 3.882 26 H 0.269 0.731 27 H 0.383 0.617 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.379 0.621 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 -12.328 10.827 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.176 4.176 12 C -0.028 4.028 13 N -0.335 5.335 14 C 0.285 3.715 15 O -0.429 6.429 16 C 0.037 3.963 17 H 0.136 0.864 18 O -0.345 6.345 19 C -0.134 4.134 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.004 4.004 26 H 0.079 0.921 27 H 0.234 0.766 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.228 0.772 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.290 -13.020 10.186 16.534 hybrid contribution 0.556 1.615 0.274 1.730 sum 0.266 -11.405 10.460 15.477 Atomic orbital electron populations 1.69642 1.05989 1.27740 1.50216 1.24979 0.95007 0.99533 0.93388 0.86414 0.79798 0.82358 0.78403 1.20370 1.21027 1.19702 1.21465 0.93755 0.90200 1.52045 0.91697 1.19590 0.86525 0.90755 0.82331 1.86131 1.51434 1.54901 1.46766 1.23202 1.03203 0.89832 1.01354 1.22305 0.89308 0.97240 0.93926 1.48627 1.30078 1.04910 1.49883 1.21057 0.85099 0.82588 0.82802 1.90664 1.34270 1.79244 1.38763 1.21846 0.99940 0.82700 0.91776 0.86404 1.86537 1.33014 1.29732 1.85201 1.21837 0.96260 1.01537 0.93787 1.21593 0.95514 1.01706 0.96999 1.21484 0.98992 1.00139 0.94748 1.21541 0.95060 0.99402 0.99670 1.21541 0.96337 1.01551 0.96273 1.21508 0.98502 1.00137 0.94443 1.22394 0.94157 0.85670 0.98136 0.92121 0.76621 0.91303 0.89632 0.92300 0.92548 0.77177 0.89354 0.91652 0.91544 0.91831 0.91986 0.92234 0.92055 0.91921 0.92032 0.91777 0.91170 0.91088 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.62 10.76 55.43 0.60 -22.03 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.71 8.25 -34.44 -0.28 -13.99 16 8 H 0.06 1.66 7.78 -52.49 -0.41 1.25 16 9 C 0.25 5.88 0.88 -89.63 -0.08 5.80 16 10 O -0.58 -14.80 13.17 -35.23 -0.46 -15.26 16 11 C -0.14 -2.83 5.52 -24.87 -0.14 -2.97 16 12 C 0.09 1.63 6.13 -3.04 -0.02 1.62 16 13 N -0.60 -11.55 3.33 -170.49 -0.57 -12.12 16 14 C 0.50 9.20 6.16 -10.99 -0.07 9.13 16 15 O -0.55 -11.96 16.54 -14.15 -0.23 -12.19 16 16 C 0.10 1.43 2.53 -27.89 -0.07 1.36 16 17 H 0.12 1.61 7.90 -51.93 -0.41 1.20 16 18 O -0.54 -7.78 12.48 -54.93 -0.69 -8.46 16 19 C -0.12 -1.33 1.95 -90.62 -0.18 -1.51 16 20 C -0.12 -1.36 4.59 -26.73 -0.12 -1.48 16 21 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 22 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 24 C -0.11 -1.06 5.10 -26.73 -0.14 -1.19 16 25 C 0.12 2.60 6.11 -2.53 -0.02 2.58 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.38 9.72 7.24 45.56 0.33 10.05 16 28 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 29 H 0.09 1.85 7.69 -51.93 -0.40 1.45 16 30 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 31 H 0.06 0.81 6.02 -51.93 -0.31 0.50 16 32 H 0.38 4.80 6.87 45.56 0.31 5.12 16 33 H 0.09 1.07 5.73 -51.93 -0.30 0.77 16 34 H 0.06 0.68 6.71 -51.93 -0.35 0.33 16 35 H 0.07 0.90 7.39 -51.93 -0.38 0.51 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 44 H 0.07 1.70 7.99 -51.93 -0.41 1.28 16 45 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -28.35 346.04 -8.93 -37.28 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -6.09 Total: 15.28 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.68 Total: -2.54 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.03 Total: -34.15 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.38 Total: -35.92 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.35 -8.93 -37.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.981 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds