Wall clock time and date at job start Fri Apr 10 2020 17:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99442 * 2 1 4 4 H 1.48504 * 109.47235 * 269.99956 * 3 2 1 5 5 H 1.48493 * 109.47376 * 30.00409 * 3 2 1 6 6 H 1.48500 * 109.47274 * 150.00456 * 3 2 1 7 7 C 1.37875 * 120.00775 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99548 * 0.27332 * 7 2 1 10 10 O 1.42905 * 110.88481 * 59.02383 * 9 7 2 11 11 C 1.55152 * 111.00130 * 295.14546 * 9 7 2 12 12 C 1.54373 * 102.91789 * 206.45410 * 11 9 7 13 13 N 1.47022 * 107.28985 * 22.13404 * 12 11 9 14 14 C 1.34779 * 125.65099 * 181.12470 * 13 12 11 15 15 O 1.21283 * 119.99625 * 174.77135 * 14 13 12 16 16 C 1.50693 * 119.99923 * 354.77233 * 14 13 12 17 17 H 1.09003 * 109.47187 * 49.83515 * 16 14 13 18 18 O 1.42897 * 109.47066 * 169.83032 * 16 14 13 19 19 C 1.52997 * 109.47482 * 289.83415 * 16 14 13 20 20 C 1.53000 * 109.47188 * 294.58005 * 19 16 14 21 21 C 1.52998 * 109.47560 * 179.97438 * 20 19 16 22 22 C 1.52998 * 109.46928 * 59.99777 * 21 20 19 23 23 C 1.52998 * 109.47128 * 299.99903 * 22 21 20 24 24 C 1.52999 * 109.47113 * 60.00616 * 23 22 21 25 25 C 1.47426 * 108.69946 * 1.09805 * 13 12 11 26 26 H 0.97001 * 120.00466 * 359.97438 * 1 2 3 27 27 H 0.96696 * 114.00178 * 300.70120 * 10 9 7 28 28 H 1.09001 * 110.71915 * 324.78386 * 11 9 7 29 29 H 1.08998 * 110.72621 * 88.06004 * 11 9 7 30 30 H 1.09005 * 109.84591 * 262.73238 * 12 11 9 31 31 H 1.09004 * 109.90496 * 141.57538 * 12 11 9 32 32 H 0.96703 * 113.99906 * 60.00641 * 18 16 14 33 33 H 1.08997 * 109.47220 * 54.57598 * 19 16 14 34 34 H 1.09001 * 109.47176 * 300.00032 * 20 19 16 35 35 H 1.08997 * 109.46853 * 59.99246 * 20 19 16 36 36 H 1.09001 * 109.46917 * 300.00209 * 21 20 19 37 37 H 1.08993 * 109.47324 * 180.02562 * 21 20 19 38 38 H 1.09006 * 109.46968 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47306 * 60.00096 * 22 21 20 40 40 H 1.09001 * 109.47653 * 300.00141 * 23 22 21 41 41 H 1.09004 * 109.47344 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.47680 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.47248 * 59.99278 * 24 23 22 44 44 H 1.09007 * 110.36397 * 217.03018 * 25 13 12 45 45 H 1.09000 * 110.36986 * 94.71274 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.6999 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0073 10 8 0.4061 -2.5935 -1.1559 11 6 0.4348 -2.6767 1.3000 12 6 0.3282 -4.2109 1.4346 13 7 1.4285 -4.7955 0.6541 14 6 1.6695 -6.1126 0.5007 15 8 2.5513 -6.4850 -0.2441 16 6 0.8433 -7.1226 1.2545 17 1 -0.2151 -6.8991 1.1202 18 8 1.1205 -8.4325 0.7554 19 6 1.1931 -7.0592 2.7426 20 6 2.6430 -7.5038 2.9451 21 6 2.9931 -7.4398 4.4331 22 6 2.0613 -8.3665 5.2165 23 6 0.6115 -7.9218 5.0141 24 6 0.2613 -7.9859 3.5261 25 6 2.2241 -3.7022 0.0666 26 1 -0.4851 0.8400 0.0004 27 1 -0.2525 -1.8884 -1.2186 28 1 0.9695 -2.2515 2.1493 29 1 -0.5537 -2.2280 1.2014 30 1 -0.6287 -4.5515 1.0390 31 1 0.4225 -4.4989 2.4817 32 1 2.0460 -8.6990 0.8426 33 1 1.0733 -6.0367 3.1007 34 1 2.7629 -8.5263 2.5869 35 1 3.3068 -6.8434 2.3872 36 1 2.8734 -6.4172 4.7908 37 1 4.0261 -7.7561 4.5772 38 1 2.3105 -8.3206 6.2767 39 1 2.1810 -9.3892 4.8588 40 1 0.4917 -6.8992 5.3719 41 1 -0.0524 -8.5823 5.5719 42 1 -0.7718 -7.6695 3.3819 43 1 0.3811 -9.0086 3.1684 44 1 2.5656 -3.9758 -0.9318 45 1 3.0735 -3.4646 0.7070 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:24 Heat of formation + Delta-G solvation = -180.335388 kcal Electronic energy + Delta-G solvation = -25851.192490 eV Core-core repulsion = 22252.449070 eV Total energy + Delta-G solvation = -3598.743420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65859 -39.81997 -38.78048 -36.95597 -36.13453 -34.18741 -32.70428 -31.66216 -31.37395 -30.10377 -28.13927 -26.44167 -24.16873 -23.51498 -22.56136 -21.62021 -20.65070 -20.46462 -19.14908 -18.66072 -17.73973 -16.98805 -16.89132 -16.61526 -16.15253 -16.02723 -15.49947 -15.25380 -15.01171 -14.84181 -14.71976 -14.13048 -13.97731 -13.66236 -13.58088 -13.27127 -13.19749 -13.06962 -13.03358 -12.81509 -12.66922 -12.53116 -12.26601 -12.21705 -11.99855 -11.90888 -11.73618 -11.32257 -11.31735 -11.25738 -10.91472 -10.67689 -10.42085 -10.15651 -9.61706 -8.25503 -6.40237 1.41653 1.45216 1.48792 1.53461 1.96895 2.39491 2.99496 3.20191 3.45603 3.58502 3.71021 3.78313 3.87280 4.01226 4.17560 4.24406 4.30684 4.31769 4.41615 4.48240 4.52160 4.58231 4.62414 4.66653 4.71424 4.76211 4.86248 5.01000 5.12575 5.15875 5.23333 5.23635 5.29291 5.30527 5.39383 5.43025 5.43422 5.52419 5.60736 5.76255 6.05843 6.41381 6.60223 6.64004 7.04742 7.30839 7.41120 8.80709 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.004045 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.239543 B = 6920.310671 C = 7317.393090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.039 3.961 3 Si 0.959 3.041 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.563 4.563 8 H 0.055 0.945 9 C 0.234 3.766 10 O -0.596 6.596 11 C -0.127 4.127 12 C 0.102 3.898 13 N -0.604 5.604 14 C 0.491 3.509 15 O -0.589 6.589 16 C 0.110 3.890 17 H 0.131 0.869 18 O -0.544 6.544 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.104 4.104 25 C 0.123 3.877 26 H 0.272 0.728 27 H 0.380 0.620 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.385 0.615 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 -13.095 12.867 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.163 4.163 3 Si 0.785 3.215 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.601 4.601 8 H 0.073 0.927 9 C 0.194 3.806 10 O -0.405 6.405 11 C -0.166 4.166 12 C -0.020 4.020 13 N -0.337 5.337 14 C 0.281 3.719 15 O -0.471 6.471 16 C 0.048 3.952 17 H 0.149 0.851 18 O -0.351 6.351 19 C -0.126 4.126 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.141 4.141 25 C 0.000 4.000 26 H 0.082 0.918 27 H 0.230 0.770 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.236 0.764 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.147 -13.800 12.247 18.487 hybrid contribution 0.854 1.846 -0.423 2.078 sum -0.293 -11.954 11.824 16.817 Atomic orbital electron populations 1.69700 1.06637 1.28459 1.49849 1.25576 0.95813 1.01932 0.92943 0.85546 0.78817 0.79130 0.78046 1.20723 1.20171 1.19570 1.21690 0.93598 0.91677 1.53175 0.92705 1.19784 0.87039 0.90681 0.83130 1.86119 1.51576 1.54737 1.48052 1.22980 1.01786 0.92399 0.99402 1.22357 0.89147 0.94619 0.95881 1.48683 1.30217 1.04813 1.49961 1.21995 0.84888 0.82691 0.82297 1.90638 1.36149 1.79766 1.40546 1.21922 0.99466 0.81117 0.92713 0.85114 1.86521 1.33685 1.29445 1.85428 1.21797 0.96885 1.02071 0.91820 1.21575 0.94824 1.01388 0.97936 1.21475 0.99753 1.00356 0.93592 1.21535 0.94655 0.99127 1.00101 1.21543 0.96581 1.01990 0.95395 1.21492 0.98331 0.99409 0.94896 1.22152 0.94448 0.86397 0.96958 0.91846 0.77019 0.91498 0.90714 0.90910 0.88787 0.76407 0.89542 0.90900 0.94419 0.92307 0.91555 0.91091 0.91659 0.91890 0.90586 0.90895 0.91230 0.93986 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.66 10.76 21.45 0.23 -45.43 16 2 C 0.04 1.95 5.29 84.65 0.45 2.40 16 3 Si 0.96 40.58 29.54 68.60 2.03 42.61 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.56 -29.25 8.25 25.60 0.21 -29.04 16 8 H 0.05 2.87 7.78 -2.91 -0.02 2.85 16 9 C 0.23 11.23 0.88 -10.15 -0.01 11.22 16 10 O -0.60 -30.84 13.17 -148.98 -1.96 -32.81 16 11 C -0.13 -5.17 5.52 31.80 0.18 -5.00 16 12 C 0.10 3.32 6.13 86.75 0.53 3.85 16 13 N -0.60 -22.99 3.33 -811.69 -2.70 -25.69 16 14 C 0.49 18.03 6.16 87.65 0.54 18.57 16 15 O -0.59 -26.09 16.54 15.80 0.26 -25.83 16 16 C 0.11 2.95 2.53 29.84 0.08 3.03 16 17 H 0.13 3.21 7.90 -2.39 -0.02 3.19 16 18 O -0.54 -14.87 12.48 -130.14 -1.62 -16.49 16 19 C -0.11 -2.23 1.95 -10.79 -0.02 -2.25 16 20 C -0.12 -2.53 4.59 30.59 0.14 -2.39 16 21 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 22 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 23 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 24 C -0.10 -1.69 5.10 30.60 0.16 -1.53 16 25 C 0.12 5.57 6.11 86.85 0.53 6.10 16 26 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 27 H 0.38 19.65 7.24 -74.06 -0.54 19.11 16 28 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 29 H 0.07 3.20 7.69 -2.39 -0.02 3.18 16 30 H 0.07 2.21 8.10 -2.38 -0.02 2.19 16 31 H 0.09 2.41 6.02 -2.38 -0.01 2.39 16 32 H 0.39 9.40 6.87 -74.05 -0.51 8.89 16 33 H 0.09 1.85 5.73 -2.39 -0.01 1.84 16 34 H 0.07 1.41 6.71 -2.39 -0.02 1.39 16 35 H 0.04 1.01 7.39 -2.39 -0.02 0.99 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.07 1.17 7.84 -2.39 -0.02 1.15 16 44 H 0.04 2.10 7.99 -2.38 -0.02 2.08 16 45 H 0.07 3.24 8.03 -2.39 -0.02 3.22 16 Total: -1.00 -61.32 346.04 -0.49 -61.81 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -0.05 Total: 41.56 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 3.32 Total: 0.27 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -2.47 Total: -71.12 kcal Atomic # 8 Polarization: -71.81 SS G_CDS: -3.33 Total: -75.13 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -61.32 -0.49 -61.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.523 kcal (2) G-P(sol) polarization free energy of solvation -61.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds