Wall clock time and date at job start Fri Apr 10 2020 17:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48505 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47303 * 299.99894 * 3 2 1 6 6 H 1.48501 * 109.47320 * 59.99948 * 3 2 1 7 7 C 1.37876 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00117 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00258 * 359.97438 * 7 2 1 10 10 O 1.42893 * 110.88429 * 59.30135 * 9 7 2 11 11 C 1.55154 * 111.03489 * 295.39757 * 9 7 2 12 12 C 1.54322 * 102.94565 * 206.40647 * 11 9 7 13 13 N 1.47026 * 107.26681 * 22.19375 * 12 11 9 14 14 C 1.34779 * 125.64824 * 181.02263 * 13 12 11 15 15 O 1.21284 * 119.99686 * 175.72198 * 14 13 12 16 16 C 1.50694 * 120.00035 * 355.72416 * 14 13 12 17 17 H 1.09004 * 109.47210 * 334.92030 * 16 14 13 18 18 O 1.42899 * 109.47013 * 214.91663 * 16 14 13 19 19 C 1.53004 * 109.47220 * 94.91905 * 16 14 13 20 20 C 1.53001 * 109.46908 * 294.60575 * 19 16 14 21 21 C 1.52995 * 109.46977 * 180.02562 * 20 19 16 22 22 C 1.53004 * 109.47418 * 59.99754 * 21 20 19 23 23 C 1.52999 * 109.46882 * 300.00060 * 22 21 20 24 24 C 1.53001 * 109.47205 * 60.00286 * 23 22 21 25 25 C 1.47422 * 108.70431 * 1.05926 * 13 12 11 26 26 H 0.97006 * 119.99920 * 359.97438 * 1 2 3 27 27 H 0.96706 * 114.00354 * 303.87897 * 10 9 7 28 28 H 1.08998 * 110.72609 * 324.77444 * 11 9 7 29 29 H 1.09000 * 110.72164 * 88.04586 * 11 9 7 30 30 H 1.08996 * 109.88449 * 262.78185 * 12 11 9 31 31 H 1.08997 * 109.88547 * 141.60767 * 12 11 9 32 32 H 0.96690 * 114.00211 * 299.99920 * 18 16 14 33 33 H 1.08997 * 109.47234 * 54.60344 * 19 16 14 34 34 H 1.09006 * 109.47225 * 299.99401 * 20 19 16 35 35 H 1.08996 * 109.47557 * 60.00003 * 20 19 16 36 36 H 1.08997 * 109.47060 * 299.99705 * 21 20 19 37 37 H 1.09004 * 109.47152 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.47351 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47045 * 59.99941 * 22 21 20 40 40 H 1.08997 * 109.47184 * 299.99796 * 23 22 21 41 41 H 1.09005 * 109.46613 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.47220 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47450 * 59.99672 * 24 23 22 44 44 H 1.08998 * 110.37286 * 217.03036 * 25 13 12 45 45 H 1.09001 * 110.45904 * 94.75673 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4056 -2.5993 -1.1482 11 6 0.4352 -2.6712 1.3079 12 6 0.3276 -4.2042 1.4492 13 7 1.4280 -4.7924 0.6717 14 6 1.6698 -6.1103 0.5255 15 8 2.5629 -6.4857 -0.2042 16 6 0.8303 -7.1173 1.2685 17 1 0.4147 -6.6542 2.1635 18 8 1.6429 -8.2317 1.6422 19 6 -0.3088 -7.5965 0.3664 20 6 -1.2546 -6.4295 0.0758 21 6 -2.3941 -6.9088 -0.8257 22 6 -3.1653 -8.0273 -0.1219 23 6 -2.2194 -9.1942 0.1687 24 6 -1.0800 -8.7149 1.0703 25 6 2.2238 -3.7020 0.0791 26 1 -0.4850 0.8401 0.0004 27 1 -0.2208 -1.8683 -1.2403 28 1 0.9702 -2.2425 2.1553 29 1 -0.5533 -2.2229 1.2079 30 1 -0.6292 -4.5466 1.0550 31 1 0.4217 -4.4874 2.4975 32 1 2.0461 -8.6929 0.8941 33 1 0.1029 -7.9723 -0.5702 34 1 -1.6665 -6.0537 1.0125 35 1 -0.7052 -5.6325 -0.4252 36 1 -1.9826 -7.2849 -1.7623 37 1 -3.0681 -6.0775 -1.0324 38 1 -3.9773 -8.3684 -0.7640 39 1 -3.5767 -7.6512 0.8148 40 1 -1.8080 -9.5703 -0.7680 41 1 -2.7688 -9.9908 0.6705 42 1 -0.4065 -9.5464 1.2777 43 1 -1.4915 -8.3388 2.0069 44 1 2.5656 -3.9802 -0.9178 45 1 3.0740 -3.4607 0.7171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:27 Heat of formation + Delta-G solvation = -158.982463 kcal Electronic energy + Delta-G solvation = -26047.580056 eV Core-core repulsion = 22449.762569 eV Total energy + Delta-G solvation = -3597.817488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.30664 -38.38417 -37.40120 -35.89660 -34.39304 -32.21946 -31.71889 -30.75684 -29.84701 -28.39506 -26.64424 -24.82299 -22.67644 -22.47057 -21.62864 -19.99186 -19.74171 -19.03913 -17.45472 -17.01693 -16.49937 -15.98097 -15.03256 -14.84267 -14.68409 -14.58184 -14.27256 -14.23126 -13.76894 -13.59540 -13.04700 -12.94922 -12.43228 -12.37958 -12.23252 -12.13544 -11.81146 -11.67580 -11.44872 -11.36630 -11.22707 -11.11860 -10.92128 -10.89821 -10.59495 -10.50803 -10.43682 -10.16510 -10.04913 -9.97957 -9.45947 -9.11191 -8.72817 -8.25837 -8.02771 -6.33930 -4.41899 2.90480 3.15723 3.25130 3.29234 3.45413 4.22897 4.34513 4.54155 4.66307 4.74320 4.85723 4.95962 5.04661 5.20774 5.26459 5.40083 5.45386 5.47643 5.51293 5.54002 5.63782 5.70512 5.80993 5.83888 5.96318 6.01981 6.08366 6.10809 6.11563 6.21604 6.26693 6.37479 6.39983 6.41645 6.60902 6.83968 6.91836 7.26855 7.29243 7.53474 7.69022 7.94753 8.06630 8.51618 8.61506 9.26986 9.38508 10.73452 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.004323 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.987327 B = 6475.102758 C = 7213.941784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.137 4.137 12 C 0.083 3.917 13 N -0.599 5.599 14 C 0.499 3.501 15 O -0.556 6.556 16 C 0.100 3.900 17 H 0.114 0.886 18 O -0.543 6.543 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.106 4.106 25 C 0.117 3.883 26 H 0.268 0.732 27 H 0.384 0.616 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.382 0.618 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.535 -12.817 3.055 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.393 6.393 11 C -0.175 4.175 12 C -0.040 4.040 13 N -0.331 5.331 14 C 0.286 3.714 15 O -0.435 6.435 16 C 0.037 3.963 17 H 0.132 0.868 18 O -0.348 6.348 19 C -0.127 4.127 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.144 4.144 25 C -0.005 4.005 26 H 0.078 0.922 27 H 0.235 0.765 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.231 0.769 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.038 -13.350 3.182 14.994 hybrid contribution 0.237 1.467 -0.346 1.526 sum -5.801 -11.884 2.836 13.525 Atomic orbital electron populations 1.69654 1.05957 1.27628 1.50332 1.24983 0.95020 0.99543 0.93405 0.86362 0.80196 0.82696 0.77744 1.19570 1.20744 1.20792 1.21514 0.93841 0.90198 1.51914 0.91636 1.19566 0.86428 0.90715 0.82364 1.86107 1.53879 1.51845 1.47432 1.23178 1.03184 0.89901 1.01279 1.22546 0.90174 0.97256 0.94008 1.48639 1.29897 1.04876 1.49724 1.21037 0.85138 0.82658 0.82520 1.90653 1.34102 1.79279 1.39507 1.21929 0.89557 0.86192 0.98574 0.86816 1.86539 1.67209 1.43741 1.37317 1.21749 0.95002 0.97023 0.98949 1.21844 0.96543 0.97391 1.00446 1.21488 0.97201 0.98158 0.98534 1.21562 0.97748 0.95896 1.00564 1.21536 0.96666 0.97620 0.99802 1.21475 0.96822 0.97771 0.98316 1.22405 0.94225 0.85797 0.98048 0.92177 0.76548 0.91431 0.89628 0.90882 0.92912 0.76915 0.90388 0.91365 0.90130 0.92093 0.91628 0.92298 0.92000 0.92124 0.92128 0.91287 0.91822 0.91109 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.46 10.74 55.43 0.60 -21.86 16 2 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 3 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -13.68 8.26 -34.44 -0.28 -13.97 16 8 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 9 C 0.25 5.86 0.89 -89.62 -0.08 5.78 16 10 O -0.58 -14.40 13.19 -35.23 -0.46 -14.87 16 11 C -0.14 -2.83 5.51 -24.90 -0.14 -2.97 16 12 C 0.08 1.43 5.64 -3.06 -0.02 1.41 16 13 N -0.60 -11.55 2.97 -170.53 -0.51 -12.06 16 14 C 0.50 9.28 6.23 -10.99 -0.07 9.21 16 15 O -0.56 -12.05 16.74 -11.38 -0.19 -12.24 16 16 C 0.10 1.44 2.66 -27.88 -0.07 1.36 16 17 H 0.11 1.54 6.96 -51.93 -0.36 1.18 16 18 O -0.54 -7.62 12.35 -52.17 -0.64 -8.27 16 19 C -0.11 -1.34 1.93 -90.62 -0.17 -1.52 16 20 C -0.12 -1.61 3.48 -26.73 -0.09 -1.70 16 21 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 22 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 23 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 24 C -0.11 -1.09 5.00 -26.73 -0.13 -1.23 16 25 C 0.12 2.58 6.10 -2.53 -0.02 2.57 16 26 H 0.27 6.44 8.31 -40.82 -0.34 6.11 16 27 H 0.38 9.56 7.18 45.56 0.33 9.88 16 28 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 29 H 0.09 1.85 7.69 -51.93 -0.40 1.45 16 30 H 0.07 1.17 4.32 -51.93 -0.22 0.94 16 31 H 0.05 0.80 7.74 -51.93 -0.40 0.40 16 32 H 0.38 4.64 8.65 45.56 0.39 5.03 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.82 7.10 -51.93 -0.37 0.45 16 35 H 0.08 1.30 5.96 -51.93 -0.31 0.99 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.70 7.55 -51.93 -0.39 0.31 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.68 8.00 -51.93 -0.42 1.26 16 45 H 0.07 1.54 8.02 -51.93 -0.42 1.13 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -27.89 344.03 -8.61 -36.49 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -5.91 Total: 16.15 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.65 Total: -3.35 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.09 Total: -33.92 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.30 Total: -35.37 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.89 -8.61 -36.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.489 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds