Wall clock time and date at job start Fri Apr 10 2020 17:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48505 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47303 * 299.99894 * 3 2 1 6 6 H 1.48501 * 109.47320 * 59.99948 * 3 2 1 7 7 C 1.37876 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00117 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00258 * 359.97438 * 7 2 1 10 10 O 1.42893 * 110.88429 * 59.30135 * 9 7 2 11 11 C 1.55154 * 111.03489 * 295.39757 * 9 7 2 12 12 C 1.54322 * 102.94565 * 206.40647 * 11 9 7 13 13 N 1.47026 * 107.26681 * 22.19375 * 12 11 9 14 14 C 1.34779 * 125.64824 * 181.02263 * 13 12 11 15 15 O 1.21284 * 119.99686 * 175.72198 * 14 13 12 16 16 C 1.50694 * 120.00035 * 355.72416 * 14 13 12 17 17 H 1.09004 * 109.47210 * 334.92030 * 16 14 13 18 18 O 1.42899 * 109.47013 * 214.91663 * 16 14 13 19 19 C 1.53004 * 109.47220 * 94.91905 * 16 14 13 20 20 C 1.53001 * 109.46908 * 294.60575 * 19 16 14 21 21 C 1.52995 * 109.46977 * 180.02562 * 20 19 16 22 22 C 1.53004 * 109.47418 * 59.99754 * 21 20 19 23 23 C 1.52999 * 109.46882 * 300.00060 * 22 21 20 24 24 C 1.53001 * 109.47205 * 60.00286 * 23 22 21 25 25 C 1.47422 * 108.70431 * 1.05926 * 13 12 11 26 26 H 0.97006 * 119.99920 * 359.97438 * 1 2 3 27 27 H 0.96706 * 114.00354 * 303.87897 * 10 9 7 28 28 H 1.08998 * 110.72609 * 324.77444 * 11 9 7 29 29 H 1.09000 * 110.72164 * 88.04586 * 11 9 7 30 30 H 1.08996 * 109.88449 * 262.78185 * 12 11 9 31 31 H 1.08997 * 109.88547 * 141.60767 * 12 11 9 32 32 H 0.96690 * 114.00211 * 299.99920 * 18 16 14 33 33 H 1.08997 * 109.47234 * 54.60344 * 19 16 14 34 34 H 1.09006 * 109.47225 * 299.99401 * 20 19 16 35 35 H 1.08996 * 109.47557 * 60.00003 * 20 19 16 36 36 H 1.08997 * 109.47060 * 299.99705 * 21 20 19 37 37 H 1.09004 * 109.47152 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.47351 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47045 * 59.99941 * 22 21 20 40 40 H 1.08997 * 109.47184 * 299.99796 * 23 22 21 41 41 H 1.09005 * 109.46613 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.47220 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47450 * 59.99672 * 24 23 22 44 44 H 1.08998 * 110.37286 * 217.03036 * 25 13 12 45 45 H 1.09001 * 110.45904 * 94.75673 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4056 -2.5993 -1.1482 11 6 0.4352 -2.6712 1.3079 12 6 0.3276 -4.2042 1.4492 13 7 1.4280 -4.7924 0.6717 14 6 1.6698 -6.1103 0.5255 15 8 2.5629 -6.4857 -0.2042 16 6 0.8303 -7.1173 1.2685 17 1 0.4147 -6.6542 2.1635 18 8 1.6429 -8.2317 1.6422 19 6 -0.3088 -7.5965 0.3664 20 6 -1.2546 -6.4295 0.0758 21 6 -2.3941 -6.9088 -0.8257 22 6 -3.1653 -8.0273 -0.1219 23 6 -2.2194 -9.1942 0.1687 24 6 -1.0800 -8.7149 1.0703 25 6 2.2238 -3.7020 0.0791 26 1 -0.4850 0.8401 0.0004 27 1 -0.2208 -1.8683 -1.2403 28 1 0.9702 -2.2425 2.1553 29 1 -0.5533 -2.2229 1.2079 30 1 -0.6292 -4.5466 1.0550 31 1 0.4217 -4.4874 2.4975 32 1 2.0461 -8.6929 0.8941 33 1 0.1029 -7.9723 -0.5702 34 1 -1.6665 -6.0537 1.0125 35 1 -0.7052 -5.6325 -0.4252 36 1 -1.9826 -7.2849 -1.7623 37 1 -3.0681 -6.0775 -1.0324 38 1 -3.9773 -8.3684 -0.7640 39 1 -3.5767 -7.6512 0.8148 40 1 -1.8080 -9.5703 -0.7680 41 1 -2.7688 -9.9908 0.6705 42 1 -0.4065 -9.5464 1.2777 43 1 -1.4915 -8.3388 2.0069 44 1 2.5656 -3.9802 -0.9178 45 1 3.0740 -3.4607 0.7171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:26 Heat of formation + Delta-G solvation = -177.920769 kcal Electronic energy + Delta-G solvation = -26048.401283 eV Core-core repulsion = 22449.762569 eV Total energy + Delta-G solvation = -3598.638714 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66783 -39.69059 -38.85017 -37.10480 -36.14202 -34.17867 -32.79805 -31.63221 -31.44901 -30.04022 -28.03725 -26.46736 -23.96700 -23.58604 -22.68651 -21.57266 -20.81491 -20.47170 -19.21997 -18.56402 -17.71854 -17.30946 -16.94665 -16.21541 -16.07669 -16.00039 -15.49624 -15.34508 -15.02952 -14.73292 -14.63456 -14.12824 -14.00262 -13.73154 -13.63505 -13.26947 -13.23135 -13.15432 -12.99780 -12.90767 -12.63106 -12.47638 -12.27718 -12.24416 -12.00808 -11.85110 -11.74745 -11.33707 -11.29545 -11.15392 -10.91867 -10.68469 -10.46819 -10.14436 -9.60428 -8.25998 -6.40758 1.40005 1.44464 1.45291 1.54391 1.96195 2.39171 2.98855 3.23419 3.40964 3.61666 3.74436 3.78528 3.92424 4.00539 4.12650 4.28189 4.31194 4.33104 4.40204 4.47977 4.55577 4.57495 4.61950 4.62615 4.69996 4.79594 4.88173 5.00579 5.14174 5.18450 5.21539 5.24149 5.27091 5.29932 5.41571 5.44441 5.45917 5.52933 5.58237 5.76342 6.04828 6.44708 6.57940 6.63484 7.01428 7.30691 7.41714 8.80065 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.004323 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.987327 B = 6475.102758 C = 7213.941784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.040 3.960 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.564 4.564 8 H 0.053 0.947 9 C 0.238 3.762 10 O -0.592 6.592 11 C -0.127 4.127 12 C 0.089 3.911 13 N -0.600 5.600 14 C 0.492 3.508 15 O -0.594 6.594 16 C 0.112 3.888 17 H 0.132 0.868 18 O -0.544 6.544 19 C -0.100 4.100 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.100 4.100 25 C 0.121 3.879 26 H 0.272 0.728 27 H 0.380 0.620 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.390 0.610 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 -13.837 4.587 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.162 4.162 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.603 4.603 8 H 0.072 0.928 9 C 0.198 3.802 10 O -0.402 6.402 11 C -0.166 4.166 12 C -0.032 4.032 13 N -0.333 5.333 14 C 0.282 3.718 15 O -0.476 6.476 16 C 0.050 3.950 17 H 0.149 0.851 18 O -0.350 6.350 19 C -0.119 4.119 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.138 4.138 25 C -0.002 4.002 26 H 0.082 0.918 27 H 0.230 0.770 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.240 0.760 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.492 -14.386 4.726 16.895 hybrid contribution 0.716 1.794 -0.886 2.125 sum -6.776 -12.592 3.840 14.806 Atomic orbital electron populations 1.69707 1.06554 1.28399 1.49860 1.25563 0.95826 1.01871 0.92942 0.85502 0.78789 0.79413 0.77853 1.20021 1.20596 1.19951 1.21723 0.93592 0.91750 1.53186 0.92846 1.19704 0.86869 0.90477 0.83147 1.86100 1.53963 1.51603 1.48486 1.22961 1.01829 0.92442 0.99356 1.22600 0.90235 0.94664 0.95741 1.48691 1.29984 1.04803 1.49774 1.21997 0.84956 0.82767 0.82078 1.90627 1.35922 1.79773 1.41238 1.21964 0.89113 0.85085 0.98834 0.85073 1.86526 1.67307 1.43295 1.37875 1.21694 0.94355 0.97624 0.98230 1.21788 0.96759 0.96526 1.00954 1.21484 0.96831 0.98956 0.98128 1.21543 0.97776 0.95121 1.00893 1.21537 0.96306 0.97933 0.99636 1.21453 0.96939 0.96794 0.98572 1.22167 0.94473 0.86635 0.96926 0.91821 0.76995 0.91937 0.90597 0.89226 0.89497 0.76004 0.91818 0.89980 0.93780 0.93038 0.91832 0.91179 0.91155 0.92497 0.90254 0.90853 0.90801 0.93773 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.35 10.74 21.45 0.23 -45.12 16 2 C 0.04 1.98 5.27 84.65 0.45 2.43 16 3 Si 0.96 40.67 29.54 68.60 2.03 42.70 16 4 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.56 -29.39 8.26 25.60 0.21 -29.18 16 8 H 0.05 2.83 7.78 -2.91 -0.02 2.81 16 9 C 0.24 11.41 0.89 -10.15 -0.01 11.40 16 10 O -0.59 -30.06 13.19 -148.98 -1.96 -32.03 16 11 C -0.13 -5.24 5.51 31.78 0.18 -5.06 16 12 C 0.09 2.96 5.64 86.73 0.49 3.44 16 13 N -0.60 -23.09 2.97 -811.81 -2.41 -25.51 16 14 C 0.49 18.18 6.23 87.65 0.55 18.73 16 15 O -0.59 -26.20 16.74 13.15 0.22 -25.98 16 16 C 0.11 3.02 2.66 29.85 0.08 3.09 16 17 H 0.13 3.09 6.96 -2.38 -0.02 3.08 16 18 O -0.54 -14.16 12.35 -132.79 -1.64 -15.80 16 19 C -0.10 -2.31 1.93 -10.79 -0.02 -2.33 16 20 C -0.12 -2.99 3.48 30.59 0.11 -2.88 16 21 C -0.12 -2.48 5.92 30.59 0.18 -2.30 16 22 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 23 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 24 C -0.10 -1.75 5.00 30.60 0.15 -1.59 16 25 C 0.12 5.51 6.10 86.85 0.53 6.04 16 26 H 0.27 12.93 8.31 -92.70 -0.77 12.16 16 27 H 0.38 19.41 7.18 -74.05 -0.53 18.87 16 28 H 0.06 2.60 8.03 -2.39 -0.02 2.58 16 29 H 0.08 3.26 7.69 -2.39 -0.02 3.24 16 30 H 0.09 2.71 4.32 -2.39 -0.01 2.70 16 31 H 0.09 2.34 7.74 -2.39 -0.02 2.32 16 32 H 0.39 8.95 8.65 -74.06 -0.64 8.31 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.75 7.10 -2.38 -0.02 1.73 16 35 H 0.04 1.41 5.96 -2.39 -0.01 1.39 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 42 H 0.07 1.25 7.55 -2.39 -0.02 1.23 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.04 2.20 8.00 -2.39 -0.02 2.18 16 45 H 0.07 3.17 8.02 -2.39 -0.02 3.15 16 Total: -1.00 -60.54 344.03 -0.46 -61.00 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -0.17 Total: 42.25 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 3.25 Total: -1.51 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -2.18 Total: -70.63 kcal Atomic # 8 Polarization: -70.42 SS G_CDS: -3.38 Total: -73.81 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -60.54 -0.46 -61.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.917 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds