Wall clock time and date at job start Fri Apr 10 2020 17:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00189 * 2 1 4 4 O 1.20828 * 119.99957 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99965 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47006 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99732 * 269.99822 * 6 5 3 8 8 H 1.08004 * 120.00006 * 188.56919 * 7 6 5 9 9 C 1.38808 * 120.00465 * 8.56822 * 7 6 5 10 10 N 1.31620 * 119.99776 * 24.79685 * 9 7 6 11 11 Si 1.86801 * 120.00325 * 204.80297 * 9 7 6 12 12 H 1.48495 * 109.46949 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47193 * 119.99914 * 11 9 7 14 14 H 1.48506 * 109.46630 * 240.00017 * 11 9 7 15 15 C 1.46495 * 120.00162 * 90.00331 * 6 5 3 16 16 C 1.50700 * 109.47737 * 92.25269 * 15 6 5 17 17 N 1.33312 * 126.54824 * 90.02115 * 16 15 6 18 18 N 1.28999 * 107.35370 * 180.02562 * 17 16 15 19 19 N 1.28787 * 108.72462 * 0.02562 * 18 17 16 20 20 C 1.46499 * 125.44912 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.47138 * 359.97365 * 20 19 18 22 22 C 1.52999 * 109.47049 * 119.97105 * 20 19 18 23 23 C 1.52991 * 109.47055 * 239.97253 * 20 19 18 24 24 N 1.28882 * 109.09914 * 359.72735 * 19 18 17 25 25 H 1.09005 * 109.47414 * 59.99459 * 1 2 3 26 26 H 1.08997 * 109.47606 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47002 * 299.99625 * 1 2 3 28 28 H 1.08999 * 109.47380 * 60.00017 * 5 3 2 29 29 H 1.08998 * 109.47480 * 300.00040 * 5 3 2 30 30 H 0.97002 * 120.00141 * 179.97438 * 10 9 7 31 31 H 1.09008 * 109.46980 * 212.25334 * 15 6 5 32 32 H 1.09005 * 109.47309 * 332.24768 * 15 6 5 33 33 H 1.09002 * 109.47192 * 59.99602 * 21 20 19 34 34 H 1.08998 * 109.47532 * 180.02562 * 21 20 19 35 35 H 1.09002 * 109.46976 * 300.00109 * 21 20 19 36 36 H 1.08999 * 109.47059 * 60.00294 * 22 20 19 37 37 H 1.09006 * 109.47260 * 179.97438 * 22 20 19 38 38 H 1.08994 * 109.47281 * 300.00217 * 22 20 19 39 39 H 1.09000 * 109.47546 * 60.00470 * 23 20 19 40 40 H 1.09004 * 109.47341 * 179.97438 * 23 20 19 41 41 H 1.08997 * 109.47639 * 300.00269 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1754 3.3370 -1.1855 8 1 4.6127 4.3245 -1.1903 9 6 3.8097 2.7341 -2.3811 10 7 2.8740 1.8085 -2.3922 11 14 4.6454 3.2365 -3.9744 12 1 5.6541 4.2895 -3.6936 13 1 5.3160 2.0556 -4.5753 14 1 3.6300 3.7640 -4.9210 15 6 4.1900 3.3813 1.2692 16 6 5.6366 3.2658 1.6757 17 7 6.6207 4.1061 1.3555 18 7 7.7022 3.6556 1.8952 19 7 7.4252 2.5722 2.5341 20 6 8.3859 1.7579 3.2826 21 6 9.7747 2.3928 3.1889 22 6 7.9573 1.6831 4.7494 23 6 8.4288 0.3476 2.6912 24 7 6.1664 2.3224 2.4148 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.9557 0.7809 -0.8908 29 1 3.9564 0.7805 0.8891 30 1 2.6182 1.3874 -3.2278 31 1 3.9289 4.4329 1.1501 32 1 3.5597 2.9354 2.0386 33 1 9.7441 3.3976 3.6102 34 1 10.4896 1.7867 3.7454 35 1 10.0801 2.4462 2.1439 36 1 6.9678 1.2307 4.8162 37 1 8.6718 1.0768 5.3063 38 1 7.9266 2.6878 5.1707 39 1 8.7342 0.4008 1.6462 40 1 9.1439 -0.2582 3.2478 41 1 7.4394 -0.1048 2.7579 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593961277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:42 Heat of formation + Delta-G solvation = 71.020703 kcal Electronic energy + Delta-G solvation = -25084.507326 eV Core-core repulsion = 21425.415931 eV Total energy + Delta-G solvation = -3659.091394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.71550 -38.93772 -37.57718 -36.08850 -34.60203 -32.85395 -32.41533 -30.88367 -28.44006 -27.74337 -27.71102 -26.56738 -25.90372 -24.07902 -22.75521 -21.04766 -20.29749 -19.65258 -17.00200 -16.88438 -16.68324 -16.24415 -15.50170 -15.10385 -14.74471 -14.49925 -14.26768 -14.02188 -13.56760 -13.48267 -13.24478 -12.91908 -12.66311 -12.54536 -12.30217 -12.20925 -12.03764 -11.71907 -11.59006 -11.49084 -11.18910 -11.10339 -10.94673 -10.78500 -10.50811 -10.33016 -10.23592 -10.11211 -9.98232 -9.61460 -9.46306 -9.17032 -8.54898 -7.25199 -5.95430 -3.23243 1.80139 2.25465 2.87150 3.37660 3.46274 3.52045 3.86790 4.04666 4.13954 4.40083 4.49393 4.49786 4.75660 5.10589 5.21199 5.23455 5.31051 5.34119 5.38084 5.40159 5.46938 5.48249 5.75051 5.81406 5.87564 5.90107 5.94232 6.11032 6.26428 6.28638 6.31162 6.46071 6.52107 6.69567 6.77002 7.04685 7.69803 7.80709 8.08742 8.98098 9.05027 9.38622 9.65858 10.04800 11.16293 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.014512 B = 0.005171 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.029565 B = 5413.391907 C = 6539.779301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.382 6.382 3 C 0.470 3.530 4 O -0.507 6.507 5 C 0.188 3.812 6 N -0.554 5.554 7 C -0.251 4.251 8 H 0.088 0.912 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.907 3.093 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.291 1.291 15 C 0.236 3.764 16 C 0.171 3.829 17 N -0.276 5.276 18 N -0.081 5.081 19 N -0.144 5.144 20 C 0.182 3.818 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.158 4.158 24 N -0.314 5.314 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.258 0.742 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.789 -5.522 13.053 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.300 6.300 3 C 0.311 3.689 4 O -0.392 6.392 5 C 0.059 3.941 6 N -0.272 5.272 7 C -0.379 4.379 8 H 0.106 0.894 9 C -0.194 4.194 10 N -0.548 5.548 11 Si 0.736 3.264 12 H -0.200 1.200 13 H -0.215 1.215 14 H -0.218 1.218 15 C 0.104 3.896 16 C -0.114 4.114 17 N -0.148 5.148 18 N -0.074 5.074 19 N -0.057 5.057 20 C 0.100 3.900 21 C -0.208 4.208 22 C -0.214 4.214 23 C -0.216 4.216 24 N -0.165 5.165 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.132 0.868 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.145 -5.119 12.938 16.650 hybrid contribution -0.482 0.085 -1.182 1.279 sum 8.663 -5.034 11.756 15.447 Atomic orbital electron populations 1.22852 0.79797 1.01275 1.01276 1.86531 1.20971 1.36680 1.85778 1.25293 0.93267 0.80210 0.70179 1.90465 1.66636 1.36427 1.45672 1.20436 0.85697 0.86174 1.01822 1.43953 1.74243 1.07790 1.01225 1.19415 1.34505 1.01639 0.82370 0.89377 1.24737 0.97372 0.99230 0.98076 1.69847 1.27853 1.30738 1.26399 0.86137 0.79349 0.77872 0.83042 1.19985 1.21542 1.21806 1.19087 0.82529 0.99139 0.88863 1.27594 1.01631 0.88079 0.94137 1.75828 0.95375 1.24973 1.18592 1.78832 1.22023 0.98937 1.07584 1.50385 1.05604 1.16766 1.32976 1.21152 0.86885 0.90540 0.91436 1.22043 0.92581 1.01866 1.04355 1.22190 1.03601 1.03475 0.92157 1.22203 1.04392 0.93068 1.01948 1.74586 0.93120 1.26411 1.22334 0.92836 0.90181 0.93613 0.86791 0.92659 0.93200 0.89591 0.91044 0.90850 0.89838 0.90721 0.90451 0.89747 0.91685 0.91440 0.89783 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.37 10.57 -39.26 -0.41 -8.78 16 3 C 0.47 11.54 6.02 36.00 0.22 11.76 16 4 O -0.51 -13.89 15.90 -18.75 -0.30 -14.19 16 5 C 0.19 4.45 5.53 -5.20 -0.03 4.42 16 6 N -0.55 -13.62 2.01 -175.99 -0.35 -13.98 16 7 C -0.25 -6.82 9.70 -15.06 -0.15 -6.97 16 8 H 0.09 2.42 7.94 -52.48 -0.42 2.00 16 9 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 10 N -0.90 -25.56 8.95 55.49 0.50 -25.06 16 11 Si 0.91 22.10 29.62 -169.99 -5.04 17.07 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 C 0.24 4.98 6.29 -5.20 -0.03 4.95 16 16 C 0.17 3.48 7.94 -156.63 -1.24 2.24 16 17 N -0.28 -5.83 12.50 32.44 0.41 -5.42 16 18 N -0.08 -1.49 12.24 60.35 0.74 -0.76 16 19 N -0.14 -2.31 3.73 0.47 0.00 -2.31 16 20 C 0.18 1.98 1.30 -131.83 -0.17 1.81 16 21 C -0.15 -1.33 7.91 37.16 0.29 -1.03 16 22 C -0.16 -1.35 8.66 37.16 0.32 -1.03 16 23 C -0.16 -1.53 8.67 37.15 0.32 -1.21 16 24 N -0.31 -5.71 11.83 32.46 0.38 -5.33 16 25 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.11 2.93 6.30 -51.93 -0.33 2.60 16 29 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.09 1.81 8.06 -51.92 -0.42 1.39 16 32 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -33.74 350.56 -4.49 -38.23 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.21 Total: -1.50 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 0.51 Total: 16.76 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 1.67 Total: -52.86 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.71 Total: -22.97 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.04 Total: 17.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.74 -4.49 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593961277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.250 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds