Wall clock time and date at job start Fri Apr 10 2020 17:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.64013 * 2 1 4 4 C 1.54321 * 110.72268 * 236.66171 * 2 1 3 5 5 N 1.47011 * 107.27307 * 219.44575 * 4 2 1 6 6 C 1.36939 * 125.65207 * 178.91063 * 5 4 2 7 7 H 1.08002 * 120.00363 * 180.02562 * 6 5 4 8 8 C 1.38810 * 119.99399 * 0.02562 * 6 5 4 9 9 N 1.31621 * 120.00462 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99777 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47006 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47585 * 119.99884 * 10 8 6 13 13 H 1.48499 * 109.46845 * 240.00001 * 10 8 6 14 14 C 1.47468 * 108.72385 * 358.97400 * 5 4 2 15 15 C 1.54911 * 104.81042 * 24.06954 * 14 5 4 16 16 H 1.09004 * 111.00086 * 81.14091 * 15 14 5 17 17 C 1.52999 * 111.00624 * 204.94919 * 15 14 5 18 18 N 1.46505 * 109.47150 * 290.42028 * 17 15 14 19 19 C 1.34772 * 119.99757 * 179.97438 * 18 17 15 20 20 O 1.21285 * 120.00376 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.99929 * 179.97438 * 19 18 17 22 22 H 1.08997 * 110.50598 * 321.29462 * 21 19 18 23 23 C 1.54098 * 110.56384 * 84.19285 * 21 19 18 24 24 O 1.45696 * 104.01018 * 118.57631 * 23 21 19 25 25 C 1.33779 * 109.47664 * 359.75188 * 24 23 21 26 26 O 1.21507 * 123.07461 * 180.24168 * 25 24 23 27 27 N 1.34004 * 113.85515 * 0.44116 * 25 24 23 28 28 H 1.09004 * 109.47421 * 296.85798 * 1 2 3 29 29 H 1.08997 * 109.47277 * 56.86016 * 1 2 3 30 30 H 1.09002 * 109.46983 * 176.85995 * 1 2 3 31 31 H 1.09010 * 109.87940 * 338.86361 * 4 2 1 32 32 H 1.09002 * 109.87928 * 100.02308 * 4 2 1 33 33 H 0.96994 * 119.99997 * 180.02562 * 9 8 6 34 34 H 1.09006 * 110.34642 * 265.25574 * 14 5 4 35 35 H 1.09001 * 110.41025 * 142.91802 * 14 5 4 36 36 H 1.09001 * 109.47200 * 170.42214 * 17 15 14 37 37 H 1.09000 * 109.46910 * 50.42267 * 17 15 14 38 38 H 0.96997 * 119.99867 * 0.02562 * 18 17 15 39 39 H 1.09005 * 110.51841 * 237.20510 * 23 21 19 40 40 H 1.08997 * 110.52236 * 359.93777 * 23 21 19 41 41 H 0.97001 * 125.56192 * 179.83640 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7933 -1.2059 5 7 3.2444 -1.5520 -0.7363 6 6 4.0035 -2.4005 -1.4972 7 1 4.8456 -2.9138 -1.0568 8 6 3.6907 -2.6008 -2.8347 9 7 2.6642 -1.9757 -3.3714 10 14 4.7257 -3.7589 -3.8726 11 1 5.8125 -4.3330 -3.0392 12 1 3.8701 -4.8547 -4.3944 13 1 5.3178 -3.0091 -5.0095 14 6 3.4632 -1.2494 0.6904 15 6 2.0789 -0.7933 1.2152 16 1 1.4448 -1.6507 1.4408 17 6 2.2277 0.1122 2.4394 18 7 2.7058 -0.6784 3.5764 19 6 2.9119 -0.0865 4.7695 20 8 2.7011 1.1005 4.9022 21 6 3.4032 -0.8998 5.9392 22 1 2.9334 -1.8833 5.9446 23 6 4.9382 -1.0298 5.9015 24 8 5.3766 -0.3922 7.1359 25 6 4.3111 0.0552 7.8098 26 8 4.3950 0.6330 8.8754 27 7 3.1423 -0.1957 7.2041 28 1 -0.3634 0.4643 0.9168 29 1 -0.3634 0.5618 -0.8605 30 1 -0.3633 -1.0261 -0.0563 31 1 1.3129 -1.4786 -1.5750 32 1 2.3741 -0.1058 -1.9975 33 1 2.4455 -2.1161 -4.3058 34 1 4.1935 -0.4477 0.8001 35 1 3.7952 -2.1415 1.2215 36 1 1.2616 0.5536 2.6845 37 1 2.9440 0.9042 2.2206 38 1 2.8747 -1.6276 3.4702 39 1 5.2325 -2.0793 5.8881 40 1 5.3448 -0.5069 5.0359 41 1 2.2673 0.0506 7.5425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092580862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:07 Heat of formation + Delta-G solvation = -82.973623 kcal Electronic energy + Delta-G solvation = -24182.076758 eV Core-core repulsion = 20484.014917 eV Total energy + Delta-G solvation = -3698.061840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.12316 -39.77901 -38.15416 -37.40568 -35.13964 -34.85620 -33.08648 -30.85660 -30.68514 -29.09320 -26.19963 -25.56501 -24.57092 -22.81766 -22.74240 -21.10709 -20.14348 -19.43938 -18.56869 -18.22010 -17.39265 -16.88897 -16.37506 -16.11384 -15.41801 -15.15605 -14.74519 -14.60988 -14.44719 -13.98658 -13.95089 -13.72926 -13.47135 -13.06795 -12.72809 -12.63616 -11.94178 -11.79840 -11.51681 -11.32542 -11.25814 -11.03267 -10.88635 -10.87237 -10.69814 -10.25587 -10.06675 -10.04223 -9.94437 -9.71213 -9.54077 -9.26450 -8.68724 -6.92301 -5.79488 -3.13598 2.05468 2.18534 2.40568 2.75691 3.22534 3.33686 3.39196 3.41841 3.62363 4.11404 4.18829 4.41383 4.61394 4.78216 4.94610 4.97889 5.06670 5.18538 5.42398 5.46284 5.61712 5.72699 5.89107 5.93703 6.06287 6.14165 6.17245 6.35694 6.37822 6.43094 6.51905 6.63613 6.81243 6.83186 7.16742 7.48376 7.55176 7.71324 7.75567 7.83632 8.17372 9.13512 9.73912 10.39122 11.32020 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.003118 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.914109 B = 8979.218185 C =10000.415006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.920 5.920 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.142 3.858 15 C -0.114 4.114 16 H 0.081 0.919 17 C 0.131 3.869 18 N -0.715 5.715 19 C 0.498 3.502 20 O -0.522 6.522 21 C 0.076 3.924 22 H 0.128 0.872 23 C 0.054 3.946 24 O -0.322 6.322 25 C 0.652 3.348 26 O -0.519 6.519 27 N -0.710 5.710 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.252 0.748 34 H 0.019 0.981 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.405 0.595 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 -0.733 15.078 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.359 4.359 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.568 5.568 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.217 1.217 14 C 0.015 3.985 15 C -0.134 4.134 16 H 0.100 0.900 17 C 0.008 3.992 18 N -0.367 5.367 19 C 0.281 3.719 20 O -0.398 6.398 21 C -0.035 4.035 22 H 0.146 0.854 23 C -0.021 4.021 24 O -0.232 6.232 25 C 0.404 3.596 26 O -0.403 6.403 27 N -0.383 5.383 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.239 0.761 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -2.028 0.332 15.498 15.633 hybrid contribution 0.011 -1.017 -0.867 1.337 sum -2.017 -0.685 14.630 14.785 Atomic orbital electron populations 1.21701 0.95258 1.01661 1.00612 1.22444 0.95205 0.99124 0.96233 0.91398 1.21230 0.89107 0.93086 0.90726 1.44471 1.32631 1.51467 1.04667 1.19082 1.07700 1.17729 0.91384 0.90403 1.24811 0.98380 1.00257 0.96929 1.69965 1.28693 1.45436 1.12662 0.86057 0.79261 0.80114 0.80378 1.20500 1.21743 1.21730 1.21589 0.92902 0.96960 0.87032 1.22699 0.99589 0.98071 0.93014 0.90018 1.21494 0.99647 0.94064 0.83990 1.46068 1.67011 1.13482 1.10091 1.20501 0.79000 0.88406 0.84028 1.90786 1.50396 1.15052 1.83530 1.22342 0.97959 0.97940 0.85252 0.85425 1.24290 0.89935 1.01268 0.86623 1.87309 1.31007 1.70943 1.33953 1.18420 0.79596 0.77899 0.83648 1.91092 1.85048 1.44407 1.19791 1.45660 1.09581 1.62302 1.20761 0.93694 0.92701 0.92671 0.93237 0.94001 0.93742 0.96349 0.94604 0.91335 0.91066 0.76051 0.85913 0.86906 0.71624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.16 37.16 0.34 -1.56 16 2 C -0.11 -1.81 3.02 -88.79 -0.27 -2.08 16 3 H 0.07 1.09 8.04 -51.93 -0.42 0.68 16 4 C 0.18 4.11 4.97 -3.07 -0.02 4.09 16 5 N -0.61 -14.26 3.40 -170.04 -0.58 -14.84 16 6 C -0.23 -6.06 10.28 -15.06 -0.15 -6.22 16 7 H 0.08 1.97 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -25.98 10.31 55.49 0.57 -25.41 16 10 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.14 2.49 6.56 -2.50 -0.02 2.47 16 15 C -0.11 -1.61 2.51 -88.47 -0.22 -1.83 16 16 H 0.08 1.12 8.05 -51.93 -0.42 0.71 16 17 C 0.13 1.54 5.12 -4.04 -0.02 1.52 16 18 N -0.71 -6.31 5.45 -60.29 -0.33 -6.64 16 19 C 0.50 4.80 6.93 -10.99 -0.08 4.73 16 20 O -0.52 -7.48 16.60 5.55 0.09 -7.38 16 21 C 0.08 0.48 4.17 -68.19 -0.28 0.19 16 22 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 23 C 0.05 0.33 7.87 37.73 0.30 0.63 16 24 O -0.32 -3.48 11.09 -37.85 -0.42 -3.90 16 25 C 0.65 7.98 9.16 53.71 0.49 8.47 16 26 O -0.52 -8.40 18.04 -19.11 -0.34 -8.75 16 27 N -0.71 -6.21 5.66 -59.35 -0.34 -6.55 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 31 H 0.05 1.24 7.00 -51.92 -0.36 0.87 16 32 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 33 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.02 0.34 7.96 -51.93 -0.41 -0.08 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 38 H 0.40 2.58 8.43 -40.82 -0.34 2.23 16 39 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.11 0.68 7.72 -51.93 -0.40 0.28 16 41 H 0.44 3.27 8.96 -40.82 -0.37 2.91 16 LS Contribution 341.41 15.07 5.15 5.15 Total: -1.00 -35.35 341.41 -7.28 -42.63 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.03 Total: -0.63 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.02 Total: 10.14 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.67 Total: -53.43 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.67 Total: -20.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.35 -7.28 -42.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092580862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.343 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds