Wall clock time and date at job start Fri Apr 10 2020 17:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34630 * 117.00118 * 2 1 4 4 O 1.21513 * 120.00038 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00198 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00372 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.47326 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00095 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99966 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00084 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.55546 * 36.97121 * 10 9 7 12 12 C 1.54847 * 110.62927 * 160.04521 * 10 9 7 13 13 C 1.55846 * 103.44842 * 118.48716 * 12 10 9 14 14 H 1.08995 * 116.12760 * 159.14368 * 13 12 10 15 15 C 1.55841 * 105.06444 * 288.17756 * 13 12 10 16 16 C 1.54856 * 103.44468 * 71.82105 * 15 13 12 17 17 C 1.55842 * 103.44585 * 359.97438 * 16 15 13 18 18 H 1.09005 * 116.12455 * 159.15050 * 17 16 15 19 19 N 1.50231 * 101.05100 * 32.94073 * 17 16 15 20 20 C 1.36939 * 130.84464 * 126.05510 * 19 17 16 21 21 H 1.07999 * 119.99321 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00580 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99637 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00443 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46661 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47252 * 119.99485 * 24 22 20 27 27 H 1.48496 * 109.47238 * 239.99759 * 24 22 20 28 28 H 1.09002 * 109.46749 * 300.00292 * 1 2 3 29 29 H 1.08995 * 109.46717 * 59.99916 * 1 2 3 30 30 H 1.09001 * 109.47237 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99531 * 359.97438 * 5 3 2 32 32 H 1.09004 * 109.47134 * 59.99135 * 6 5 3 33 33 H 1.08997 * 109.46740 * 299.99700 * 6 5 3 34 34 H 0.96995 * 120.00304 * 0.02562 * 9 7 6 35 35 H 1.08999 * 110.62876 * 236.97949 * 12 10 9 36 36 H 1.09007 * 110.62571 * 359.97438 * 12 10 9 37 37 H 1.08994 * 110.62640 * 190.31027 * 15 13 12 38 38 H 1.09006 * 110.62477 * 313.17492 * 15 13 12 39 39 H 1.08998 * 110.62560 * 241.50777 * 16 15 13 40 40 H 1.09000 * 110.62485 * 118.48943 * 16 15 13 41 41 H 0.97003 * 119.99972 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.0744 2.5754 -0.0011 7 6 5.5684 2.3779 -0.0010 8 8 6.0319 1.2572 -0.0009 9 7 6.3894 3.4467 -0.0019 10 6 7.8418 3.2548 -0.0024 11 1 8.1141 2.3959 -0.6158 12 6 8.5609 4.5334 -0.4980 13 6 9.4287 4.9583 0.7248 14 1 10.2742 5.6115 0.5095 15 6 8.4119 5.4984 1.7750 16 6 7.6927 4.2197 2.2706 17 6 8.3726 3.0812 1.4519 18 1 8.2890 2.0763 1.8661 19 7 9.7685 3.6192 1.3146 20 6 10.9785 3.0610 1.6298 21 1 11.0212 2.0686 2.0536 22 6 12.1501 3.7706 1.4046 23 7 12.0980 4.9799 0.8876 24 14 13.8006 3.0094 1.8353 25 1 13.5878 1.6514 2.3975 26 1 14.6356 2.9124 0.6110 27 1 14.4907 3.8587 2.8391 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9375 0.4566 -0.0005 32 1 3.7818 3.1327 0.8888 33 1 3.7812 3.1321 -0.8911 34 1 6.0187 4.3430 -0.0024 35 1 9.1924 4.3100 -1.3579 36 1 7.8369 5.3103 -0.7440 37 1 8.9330 5.9889 2.5970 38 1 7.7042 6.1831 1.3074 39 1 6.6268 4.2680 2.0484 40 1 7.8573 4.0761 3.3385 41 1 12.9166 5.4760 0.7306 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108985958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:18 Heat of formation + Delta-G solvation = -86.116361 kcal Electronic energy + Delta-G solvation = -24386.121726 eV Core-core repulsion = 20687.923606 eV Total energy + Delta-G solvation = -3698.198120 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.75806 -41.29676 -39.90724 -37.68279 -35.78241 -35.44719 -34.23276 -31.04964 -30.93006 -30.06687 -28.85196 -27.50660 -26.02294 -23.03932 -22.52374 -21.93598 -21.23434 -20.25327 -20.09057 -18.90788 -18.08957 -17.73346 -17.63167 -17.00046 -16.80334 -16.64643 -16.03039 -15.71533 -15.62920 -15.02552 -14.66664 -14.37368 -14.08065 -13.91842 -13.57861 -13.41553 -13.20100 -12.93569 -12.87116 -12.79518 -12.60059 -12.35099 -11.97733 -11.87259 -11.85473 -11.78894 -11.54763 -11.22805 -11.07261 -10.92301 -10.77800 -10.41723 -10.00476 -8.85122 -7.79530 -5.18518 1.04276 1.46087 1.47106 1.52266 1.56551 1.67096 2.17610 2.50435 3.26718 3.34030 3.49093 3.69160 3.97873 4.11227 4.17419 4.31592 4.32968 4.38118 4.40751 4.43967 4.49236 4.63642 4.71458 4.73439 4.82963 4.98562 5.02076 5.10161 5.18163 5.21475 5.32956 5.34827 5.48878 5.55174 5.76070 5.90693 6.25256 6.29152 6.54097 7.06339 7.18317 7.21060 7.70010 8.55497 9.27326 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.035053 B = 0.002990 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.601986 B = 9363.377366 C = 9751.058108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.377 6.377 3 C 0.650 3.350 4 O -0.599 6.599 5 N -0.696 5.696 6 C 0.125 3.875 7 C 0.509 3.491 8 O -0.576 6.576 9 N -0.690 5.690 10 C 0.148 3.852 11 H 0.057 0.943 12 C -0.125 4.125 13 C 0.136 3.864 14 H 0.119 0.881 15 C -0.127 4.127 16 C -0.117 4.117 17 C 0.118 3.882 18 H 0.068 0.932 19 N -0.619 5.619 20 C -0.222 4.222 21 H 0.071 0.929 22 C -0.064 4.064 23 N -0.944 5.944 24 Si 0.974 3.026 25 H -0.274 1.274 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.134 0.866 31 H 0.418 0.582 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.419 0.581 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.032 0.968 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.039 0.961 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.428 -2.574 -2.846 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.291 6.291 3 C 0.403 3.597 4 O -0.491 6.491 5 N -0.358 5.358 6 C -0.001 4.001 7 C 0.296 3.704 8 O -0.456 6.456 9 N -0.342 5.342 10 C 0.041 3.959 11 H 0.075 0.925 12 C -0.165 4.165 13 C 0.030 3.970 14 H 0.136 0.864 15 C -0.166 4.166 16 C -0.156 4.156 17 C 0.010 3.990 18 H 0.086 0.914 19 N -0.341 5.341 20 C -0.351 4.351 21 H 0.089 0.911 22 C -0.257 4.257 23 N -0.593 5.593 24 Si 0.804 3.196 25 H -0.199 1.199 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.257 0.743 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.258 0.742 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.058 0.942 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.160 -2.920 -2.819 21.546 hybrid contribution 1.366 -0.416 0.308 1.461 sum -19.794 -3.336 -2.511 20.229 Atomic orbital electron populations 1.23537 0.72407 1.05671 1.02854 1.86272 1.26097 1.30030 1.86675 1.18049 0.83161 0.82405 0.76051 1.90986 1.65200 1.35612 1.57252 1.44290 1.03084 1.11026 1.77438 1.21121 0.87166 0.84620 1.07217 1.20736 0.89311 0.84766 0.75618 1.90723 1.78060 1.25341 1.51478 1.45828 1.05617 1.09551 1.73246 1.22100 0.78471 0.98166 0.97175 0.92465 1.23114 0.98650 0.96148 0.98583 1.23693 0.94963 0.87741 0.90584 0.86383 1.22963 0.98097 0.96631 0.98929 1.22824 0.99340 0.95217 0.98205 1.23343 0.85024 0.95823 0.94844 0.91406 1.46750 0.99855 1.15341 1.72172 1.19327 0.83467 0.98767 1.33569 0.91119 1.25394 1.00371 0.97325 1.02580 1.69675 1.26310 1.12195 1.51159 0.85059 0.80059 0.77576 0.76941 1.19898 1.21950 1.21928 0.91754 0.91685 0.84830 0.74310 0.85974 0.85853 0.74233 0.93477 0.88172 0.94939 0.89184 0.89080 0.94167 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 10.56 113.37 1.20 1.80 16 2 O -0.38 -7.41 10.62 -55.40 -0.59 -8.00 16 3 C 0.65 14.71 8.75 129.79 1.14 15.84 16 4 O -0.60 -15.96 16.13 19.80 0.32 -15.64 16 5 N -0.70 -14.37 5.53 -594.63 -3.29 -17.66 16 6 C 0.12 2.14 6.15 85.63 0.53 2.67 16 7 C 0.51 12.06 7.89 87.66 0.69 12.75 16 8 O -0.58 -18.81 15.39 -3.03 -0.05 -18.86 16 9 N -0.69 -15.58 3.63 -435.03 -1.58 -17.16 16 10 C 0.15 4.94 3.08 46.58 0.14 5.08 16 11 H 0.06 2.25 7.70 -2.39 -0.02 2.23 16 12 C -0.13 -4.27 6.20 32.21 0.20 -4.07 16 13 C 0.14 5.86 4.72 46.23 0.22 6.08 16 14 H 0.12 6.06 5.52 -2.39 -0.01 6.04 16 15 C -0.13 -4.41 6.44 32.21 0.21 -4.20 16 16 C -0.12 -3.82 6.33 32.21 0.20 -3.62 16 17 C 0.12 4.67 5.34 46.21 0.25 4.91 16 18 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 19 N -0.62 -30.51 2.98 -615.46 -1.84 -32.34 16 20 C -0.22 -12.40 10.59 84.03 0.89 -11.51 16 21 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 23 N -0.94 -54.23 10.46 21.65 0.23 -54.00 16 24 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.13 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.42 9.04 7.55 -92.71 -0.70 8.34 16 32 H 0.12 1.70 8.14 -2.38 -0.02 1.69 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.42 6.31 8.02 -92.71 -0.74 5.57 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 2.50 7.34 -2.38 -0.02 2.48 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 2.34 7.82 -2.38 -0.02 2.32 16 39 H 0.09 2.24 6.48 -2.39 -0.02 2.22 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -72.76 337.01 0.99 -71.77 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.37 Total: 21.38 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 6.13 Total: 22.63 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -6.48 Total: -121.17 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.32 Total: -42.50 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -72.76 0.99 -71.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108985958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.345 kcal (2) G-P(sol) polarization free energy of solvation -72.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds