Wall clock time and date at job start Fri Apr 10 2020 17:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34628 * 117.00028 * 2 1 4 4 O 1.21510 * 120.00208 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99901 * 179.72408 * 3 2 1 6 6 C 1.46511 * 120.00226 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47306 * 180.02562 * 6 5 3 8 8 O 1.21283 * 120.00141 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99903 * 179.97438 * 7 6 5 10 10 C 1.46491 * 119.99894 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.56270 * 32.09445 * 10 9 7 12 12 C 1.54852 * 110.62831 * 269.02265 * 10 9 7 13 13 C 1.55843 * 103.44768 * 241.51149 * 12 10 9 14 14 H 1.09004 * 115.56039 * 159.56101 * 13 12 10 15 15 C 1.55838 * 105.06286 * 288.17314 * 13 12 10 16 16 C 1.54850 * 103.44703 * 71.82696 * 15 13 12 17 17 C 1.55843 * 110.62622 * 154.99869 * 10 9 7 18 18 H 1.08999 * 115.56396 * 318.91969 * 17 10 9 19 19 N 1.50234 * 101.05016 * 32.93806 * 13 12 10 20 20 C 1.36934 * 130.84335 * 126.06578 * 19 13 12 21 21 H 1.07999 * 120.00571 * 184.90697 * 20 19 13 22 22 C 1.38819 * 119.99784 * 4.91284 * 20 19 13 23 23 N 1.31614 * 119.99907 * 8.95569 * 22 20 19 24 24 Si 1.86797 * 119.99870 * 188.96104 * 22 20 19 25 25 H 1.48498 * 109.47550 * 94.11660 * 24 22 20 26 26 H 1.48501 * 109.46934 * 214.11754 * 24 22 20 27 27 H 1.48504 * 109.47310 * 334.11287 * 24 22 20 28 28 H 1.09007 * 109.46879 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46944 * 299.99653 * 1 2 3 30 30 H 1.08999 * 109.46913 * 59.99906 * 1 2 3 31 31 H 0.96997 * 120.00280 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.46632 * 299.99864 * 6 5 3 33 33 H 1.09000 * 109.47008 * 59.99379 * 6 5 3 34 34 H 0.96998 * 119.99795 * 359.97438 * 9 7 6 35 35 H 1.09005 * 110.62360 * 0.02562 * 12 10 9 36 36 H 1.08997 * 110.62694 * 123.01916 * 12 10 9 37 37 H 1.08994 * 110.62767 * 313.33015 * 15 13 12 38 38 H 1.09013 * 110.76002 * 190.38093 * 15 13 12 39 39 H 1.08995 * 110.62518 * 241.50995 * 16 15 13 40 40 H 1.08999 * 110.76239 * 118.54993 * 16 15 13 41 41 H 0.96997 * 120.00118 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1995 0.0000 4 8 1.4015 2.2186 0.0005 5 7 3.4091 1.2701 0.0056 6 6 4.0743 2.5754 0.0062 7 6 5.5683 2.3779 0.0123 8 8 6.0319 1.2572 0.0163 9 7 6.3893 3.4468 0.0133 10 6 7.8416 3.2548 0.0186 11 1 8.1097 2.3466 -0.5211 12 6 8.3807 3.2103 1.4696 13 6 9.3526 4.4269 1.5326 14 1 9.5796 4.7962 2.5328 15 6 10.5842 4.0062 0.6755 16 6 10.0452 4.0508 -0.7755 17 6 8.5612 4.4923 -0.5974 18 1 8.0884 4.9194 -1.4818 19 7 8.6698 5.3894 0.6028 20 6 8.2701 6.6855 0.7910 21 1 7.7165 7.1976 0.0179 22 6 8.5766 7.3413 1.9755 23 7 9.3970 6.7859 2.8419 24 14 7.8244 9.0119 2.3397 25 1 6.5921 8.8342 3.1491 26 1 8.7985 9.8390 3.0963 27 1 7.4848 9.6908 1.0634 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9374 0.4566 0.0093 32 1 3.7853 3.1308 -0.8860 33 1 3.7776 3.1340 0.8939 34 1 6.0186 4.3431 0.0097 35 1 7.5673 3.3306 2.1852 36 1 8.9182 2.2796 1.6511 37 1 10.9060 2.9977 0.9348 38 1 11.4035 4.7140 0.8028 39 1 10.0997 3.0643 -1.2358 40 1 10.5945 4.7813 -1.3694 41 1 9.6109 7.2440 3.6698 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110333763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:20 Heat of formation + Delta-G solvation = -68.452345 kcal Electronic energy + Delta-G solvation = -24396.013196 eV Core-core repulsion = 20698.581046 eV Total energy + Delta-G solvation = -3697.432151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67033 -39.88897 -38.60445 -36.75385 -34.72654 -33.96076 -32.57902 -29.57326 -29.16729 -28.68565 -27.80568 -26.47091 -24.23546 -21.97191 -21.23115 -20.20084 -19.89325 -19.20035 -18.65085 -17.15469 -17.06352 -16.79769 -16.46291 -16.04318 -15.35881 -14.97585 -14.70204 -14.23752 -14.05123 -13.74475 -13.72086 -13.29095 -12.86608 -12.66634 -12.27188 -12.11417 -11.88982 -11.33163 -11.20749 -10.98605 -10.97740 -10.93153 -10.82855 -10.59132 -10.40436 -10.12204 -10.02918 -9.93204 -9.46371 -9.38881 -9.21282 -8.94689 -8.65204 -7.00396 -5.82028 -3.18566 1.92151 2.61172 2.70956 3.33941 3.39338 3.40136 3.41751 4.13125 4.36717 4.78241 4.91455 4.98887 5.05350 5.17409 5.21638 5.27728 5.28566 5.57755 5.62122 5.82111 5.91470 5.99113 6.01448 6.08755 6.15895 6.21605 6.35686 6.40656 6.53493 6.66956 6.75648 6.88403 6.99742 7.22968 7.24934 7.42796 7.71945 7.75872 8.06505 8.14802 8.33846 9.00191 9.64687 10.45935 11.28965 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.003686 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.283635 B = 7595.141616 C = 8769.400523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.649 3.351 4 O -0.574 6.574 5 N -0.695 5.695 6 C 0.116 3.884 7 C 0.506 3.494 8 O -0.549 6.549 9 N -0.697 5.697 10 C 0.129 3.871 11 H 0.083 0.917 12 C -0.146 4.146 13 C 0.159 3.841 14 H 0.145 0.855 15 C -0.136 4.136 16 C -0.129 4.129 17 C 0.125 3.875 18 H 0.089 0.911 19 N -0.589 5.589 20 C -0.219 4.219 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.418 0.582 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.407 0.593 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 -11.045 -5.897 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.402 3.598 4 O -0.463 6.463 5 N -0.357 5.357 6 C -0.010 4.010 7 C 0.290 3.710 8 O -0.428 6.428 9 N -0.346 5.346 10 C 0.022 3.978 11 H 0.101 0.899 12 C -0.186 4.186 13 C 0.052 3.948 14 H 0.162 0.838 15 C -0.175 4.175 16 C -0.169 4.169 17 C 0.016 3.984 18 H 0.107 0.893 19 N -0.310 5.310 20 C -0.347 4.347 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.563 5.563 24 Si 0.744 3.256 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.257 0.743 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.242 0.758 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.822 -11.052 -5.723 15.855 hybrid contribution -0.416 1.017 0.211 1.119 sum -10.239 -10.035 -5.512 15.359 Atomic orbital electron populations 1.23204 0.74297 1.03458 1.02802 1.86247 1.24232 1.30890 1.87100 1.17977 0.83143 0.82244 0.76472 1.91015 1.64694 1.34788 1.55830 1.44212 1.03134 1.10596 1.77780 1.21066 0.90013 0.84545 1.05379 1.20271 0.88221 0.85545 0.76915 1.90675 1.77270 1.23747 1.51099 1.45924 1.07451 1.08767 1.72457 1.22727 0.77582 0.99373 0.98070 0.89924 1.23481 1.00449 0.99552 0.95110 1.23519 0.88238 0.85541 0.97481 0.83812 1.23035 1.00081 0.98947 0.95484 1.22882 0.97258 0.99147 0.97572 1.23158 0.94033 0.89649 0.91538 0.89286 1.46530 1.67832 1.09099 1.07514 1.19000 1.28318 0.86537 1.00866 0.90313 1.24720 0.99487 0.98584 0.97617 1.69612 1.37028 1.38665 1.10957 0.86086 0.78398 0.83200 0.77955 1.21651 1.21814 1.20680 0.87958 0.91772 0.91813 0.74296 0.88056 0.87880 0.75775 0.92242 0.92568 0.93418 0.92391 0.93054 0.92382 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -4.22 10.61 -40.29 -0.43 -4.65 16 3 C 0.65 8.67 8.75 54.05 0.47 9.14 16 4 O -0.57 -9.06 16.13 -19.28 -0.31 -9.37 16 5 N -0.69 -8.65 5.53 -66.46 -0.37 -9.02 16 6 C 0.12 1.41 6.15 -5.19 -0.03 1.38 16 7 C 0.51 7.34 7.90 -10.99 -0.09 7.26 16 8 O -0.55 -9.41 15.31 5.56 0.09 -9.32 16 9 N -0.70 -10.59 5.07 -51.40 -0.26 -10.85 16 10 C 0.13 2.20 2.80 -65.44 -0.18 2.02 16 11 H 0.08 1.42 7.23 -51.93 -0.38 1.04 16 12 C -0.15 -2.77 6.23 -24.24 -0.15 -2.92 16 13 C 0.16 3.46 4.65 -62.81 -0.29 3.17 16 14 H 0.14 3.63 5.75 -51.93 -0.30 3.33 16 15 C -0.14 -2.61 6.44 -24.24 -0.16 -2.77 16 16 C -0.13 -2.24 6.44 -24.23 -0.16 -2.40 16 17 C 0.12 2.29 5.06 -62.80 -0.32 1.97 16 18 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 19 N -0.59 -13.31 2.98 -145.82 -0.44 -13.74 16 20 C -0.22 -5.54 10.56 -15.06 -0.16 -5.70 16 21 H 0.08 1.92 7.84 -52.49 -0.41 1.50 16 22 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 23 N -0.92 -25.14 10.63 55.49 0.59 -24.55 16 24 Si 0.91 20.97 29.56 -169.99 -5.03 15.94 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.42 5.09 7.55 -40.82 -0.31 4.78 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.41 5.92 8.66 -40.82 -0.35 5.57 16 35 H 0.06 1.21 7.98 -51.93 -0.41 0.79 16 36 H 0.06 1.00 7.82 -51.93 -0.41 0.60 16 37 H 0.05 0.81 7.82 -51.93 -0.41 0.41 16 38 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.05 0.78 7.82 -51.93 -0.41 0.38 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 340.08 15.07 5.13 5.13 Total: -1.00 -30.67 340.08 -7.01 -37.68 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.90 Total: 10.39 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -0.09 Total: 12.36 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.47 Total: -58.17 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.65 Total: -23.34 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.67 -7.01 -37.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110333763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.768 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds