Wall clock time and date at job start Fri Apr 10 2020 17:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00055 * 2 1 4 4 C 1.50704 * 109.47068 * 179.97438 * 3 2 1 5 5 O 1.21286 * 120.00070 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99702 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99514 * 180.02562 * 6 4 3 8 8 H 1.08990 * 115.52015 * 9.57717 * 7 6 4 9 9 C 1.53006 * 117.40591 * 224.21326 * 7 6 4 10 10 H 1.09003 * 119.52038 * 4.07487 * 9 7 6 11 11 C 1.54376 * 118.12820 * 160.66903 * 9 7 6 12 12 N 1.48565 * 104.59130 * 87.23144 * 11 9 7 13 13 C 1.46907 * 110.99899 * 200.95940 * 12 11 9 14 14 C 1.50696 * 109.46951 * 169.99884 * 13 12 11 15 15 O 1.21292 * 119.99912 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99780 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99856 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00228 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00002 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99554 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47356 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47186 * 119.99842 * 21 19 17 24 24 H 1.48498 * 109.47283 * 239.99648 * 21 19 17 25 25 C 1.52142 * 104.44326 * 320.24918 * 12 11 9 26 26 C 1.53003 * 117.44008 * 155.00123 * 7 6 4 27 27 H 1.09002 * 119.52639 * 355.86124 * 26 7 6 28 28 H 1.08999 * 109.46594 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47001 * 300.00513 * 1 2 3 30 30 H 1.08999 * 109.46570 * 60.00617 * 1 2 3 31 31 H 1.08996 * 109.47453 * 59.99655 * 3 2 1 32 32 H 1.09001 * 109.46770 * 299.99289 * 3 2 1 33 33 H 0.96999 * 120.00480 * 359.97438 * 6 4 3 34 34 H 1.08999 * 110.41445 * 206.00579 * 11 9 7 35 35 H 1.08997 * 110.41468 * 328.33472 * 11 9 7 36 36 H 1.08998 * 109.46479 * 289.99972 * 13 12 11 37 37 H 1.08997 * 109.46566 * 50.00026 * 13 12 11 38 38 H 0.97002 * 119.99770 * 0.02562 * 16 14 13 39 39 H 0.97001 * 119.99699 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.22960 * 281.87154 * 25 12 11 41 41 H 1.09003 * 112.21772 * 158.30499 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0342 0.0915 0.0015 6 7 4.2765 2.2968 0.0002 7 6 5.7370 2.1810 0.0003 8 1 6.1284 1.1770 -0.1630 9 6 6.5160 3.0963 0.9471 10 1 5.9730 3.7484 1.6314 11 6 7.9651 2.7057 1.3085 12 7 8.7942 3.3064 0.2320 13 6 10.0993 2.6385 0.1379 14 6 10.8108 3.0997 -1.1079 15 8 10.2829 3.9057 -1.8446 16 7 12.0342 2.6172 -1.4028 17 6 12.6818 3.0370 -2.5359 18 1 12.2118 3.7548 -3.1920 19 6 13.9429 2.5392 -2.8403 20 7 14.5149 1.6663 -2.0418 21 14 14.8255 3.1119 -4.3838 22 1 13.9744 4.0911 -5.1063 23 1 16.1105 3.7551 -4.0094 24 1 15.0936 1.9451 -5.2624 25 6 7.9854 3.0858 -1.0377 26 6 6.5371 3.3519 -0.5740 27 1 6.0100 4.1943 -1.0221 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8594 3.1725 -0.0009 34 1 8.2407 3.1219 2.2775 35 1 8.0760 1.6214 1.3160 36 1 10.6993 2.8888 1.0128 37 1 9.9528 1.5593 0.0943 38 1 12.4565 1.9728 -0.8134 39 1 15.3951 1.3185 -2.2544 40 1 8.0923 2.0560 -1.3785 41 1 8.2645 3.7803 -1.8301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113749618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:23 Heat of formation + Delta-G solvation = -62.978911 kcal Electronic energy + Delta-G solvation = -23273.845306 eV Core-core repulsion = 19576.650502 eV Total energy + Delta-G solvation = -3697.194805 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45161 -39.40386 -38.07415 -37.58871 -35.03725 -33.90115 -32.64830 -31.23057 -29.36416 -28.21821 -27.44357 -26.23294 -24.62554 -22.50929 -21.07621 -20.80758 -20.18063 -19.13337 -17.83368 -17.64685 -17.37110 -16.67277 -16.33692 -15.82031 -15.28894 -14.99401 -14.74357 -14.68016 -14.50960 -13.80718 -13.56013 -13.46645 -13.32476 -12.91224 -12.82307 -12.33696 -12.08716 -11.89973 -11.78306 -11.55619 -11.27723 -11.24490 -11.00216 -10.85113 -10.33915 -10.26154 -10.23257 -10.13604 -10.02075 -9.50552 -8.95679 -8.39932 -8.05170 -7.93673 -6.41864 -3.82673 2.24557 2.35938 3.16506 3.27214 3.34187 3.58283 3.62766 3.89089 4.05170 4.23187 4.32601 4.59485 4.60055 4.63272 4.71000 4.84066 4.86815 4.91840 5.01083 5.20500 5.23574 5.25634 5.34440 5.57122 5.69214 5.75791 5.79690 5.93323 6.05282 6.10737 6.26308 6.28412 6.52779 6.61842 6.98937 7.14975 7.23690 7.55445 7.90689 8.05904 8.61053 9.17665 9.53694 10.04960 10.75883 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.030597 B = 0.002371 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.889750 B =11805.186926 C =12112.875744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.516 3.484 5 O -0.514 6.514 6 N -0.698 5.698 7 C 0.103 3.897 8 H 0.134 0.866 9 C -0.168 4.168 10 H 0.117 0.883 11 C 0.060 3.940 12 N -0.487 5.487 13 C 0.031 3.969 14 C 0.443 3.557 15 O -0.581 6.581 16 N -0.562 5.562 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.069 3.931 26 C -0.163 4.163 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.402 0.598 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.393 0.607 39 H 0.271 0.729 40 H 0.043 0.957 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.943 0.739 7.397 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.035 4.035 4 C 0.301 3.699 5 O -0.387 6.387 6 N -0.350 5.350 7 C -0.003 4.003 8 H 0.152 0.848 9 C -0.189 4.189 10 H 0.135 0.865 11 C -0.068 4.068 12 N -0.212 5.212 13 C -0.101 4.101 14 C 0.228 3.772 15 O -0.466 6.466 16 N -0.198 5.198 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.057 4.057 26 C -0.183 4.183 27 H 0.135 0.865 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.237 0.763 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.500 0.752 6.981 24.526 hybrid contribution 0.241 -0.264 -0.379 0.521 sum -23.259 0.488 6.602 24.182 Atomic orbital electron populations 1.22856 0.80189 1.03480 1.00160 1.88034 1.19921 1.25030 1.95428 1.22211 0.91315 0.87213 1.02785 1.20260 0.88648 0.84490 0.76480 1.90761 1.74487 1.26409 1.47074 1.45156 1.05531 1.08790 1.75496 1.21854 0.78336 0.97639 1.02515 0.84849 1.23914 0.97162 1.03954 0.93846 0.86464 1.22648 0.89890 0.97540 0.96748 1.66358 1.01223 1.50736 1.02877 1.22102 0.91914 0.96700 0.99348 1.19681 0.83464 0.86075 0.87940 1.90451 1.66635 1.37066 1.52471 1.41863 1.14778 1.39750 1.23420 1.19751 0.98895 1.23713 1.00446 0.87809 1.25280 0.96962 0.96494 0.99282 1.69623 1.16696 1.30196 1.37676 0.85791 0.79066 0.78504 0.80926 1.19217 1.20752 1.20770 1.23454 0.87049 1.01313 0.93903 1.24055 0.97950 0.99805 0.96472 0.86479 0.88966 0.93741 0.93710 0.90071 0.90008 0.76321 0.89466 0.93608 0.89014 0.93194 0.77425 0.91898 0.93850 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.75 10.24 -55.14 -0.56 -4.31 16 3 C 0.04 0.33 6.42 36.01 0.23 0.56 16 4 C 0.52 5.78 7.91 -10.99 -0.09 5.69 16 5 O -0.51 -8.45 16.07 -14.36 -0.23 -8.68 16 6 N -0.70 -6.37 5.56 -53.80 -0.30 -6.67 16 7 C 0.10 1.21 5.97 -67.92 -0.41 0.80 16 8 H 0.13 1.89 7.40 -51.93 -0.38 1.51 16 9 C -0.17 -1.92 7.05 -89.24 -0.63 -2.55 16 10 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 11 C 0.06 0.79 6.31 -2.18 -0.01 0.78 16 12 N -0.49 -8.23 5.39 -228.13 -1.23 -9.45 16 13 C 0.03 0.57 5.58 -4.97 -0.03 0.54 16 14 C 0.44 10.42 7.49 -10.99 -0.08 10.34 16 15 O -0.58 -15.31 13.27 5.55 0.07 -15.24 16 16 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 21 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.07 1.16 5.27 -0.11 0.00 1.16 16 26 C -0.16 -2.04 6.96 -89.23 -0.62 -2.66 16 27 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.40 2.25 8.83 -40.82 -0.36 1.89 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.60 7.82 -51.93 -0.41 0.19 16 36 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 38 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.04 0.75 8.03 -51.93 -0.42 0.33 16 41 H 0.12 2.40 6.21 -51.93 -0.32 2.07 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -34.95 347.67 -8.07 -43.02 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.94 Total: 10.28 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.76 Total: 7.97 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.86 Total: -54.36 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.72 Total: -28.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.95 -8.07 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113749618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.959 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds