Wall clock time and date at job start Fri Apr 10 2020 17:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46768 * 124.34920 * 2 1 4 4 C 1.54479 * 105.47608 * 197.03718 * 3 2 1 5 5 H 1.09004 * 110.99633 * 92.71421 * 4 3 2 6 6 N 1.46499 * 110.97015 * 216.46460 * 4 3 2 7 7 C 1.34777 * 119.99665 * 199.11089 * 6 4 3 8 8 O 1.21343 * 120.00424 * 359.72011 * 7 6 4 9 9 C 1.49452 * 119.99622 * 179.72283 * 7 6 4 10 10 O 1.21343 * 119.99955 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99621 * 179.97438 * 9 7 6 12 12 C 1.46505 * 119.99724 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47306 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47245 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00089 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00007 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00272 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99956 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47135 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47052 * 120.00158 * 19 17 15 22 22 H 1.48498 * 109.46916 * 240.00281 * 19 17 15 23 23 C 1.54625 * 101.76426 * 334.58507 * 4 3 2 24 24 C 1.34418 * 124.35656 * 180.02562 * 2 1 3 25 25 O 1.21286 * 124.93459 * 359.60301 * 24 2 1 26 26 H 1.09006 * 109.46627 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47215 * 300.00067 * 1 2 3 28 28 H 1.09000 * 109.47570 * 60.00420 * 1 2 3 29 29 H 1.08997 * 110.24930 * 78.03427 * 3 2 1 30 30 H 1.09006 * 110.24596 * 316.03945 * 3 2 1 31 31 H 0.97001 * 119.99790 * 18.82802 * 6 4 3 32 32 H 0.97000 * 120.00483 * 0.02562 * 11 9 7 33 33 H 1.08995 * 109.46852 * 300.00269 * 12 11 9 34 34 H 1.09001 * 109.47048 * 60.00288 * 12 11 9 35 35 H 1.09001 * 109.47089 * 300.00487 * 13 12 11 36 36 H 1.09001 * 109.47054 * 60.00089 * 13 12 11 37 37 H 1.09003 * 109.46592 * 299.99795 * 14 13 12 38 38 H 1.08993 * 109.47193 * 59.99738 * 14 13 12 39 39 H 0.96998 * 120.00722 * 179.97438 * 18 17 15 40 40 H 1.08997 * 110.48879 * 143.47496 * 23 4 3 41 41 H 1.08999 * 110.48457 * 266.12146 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7489 -0.4362 5 1 3.8270 0.8452 -1.5146 6 7 4.7418 1.4911 0.2791 7 6 5.9980 1.5287 -0.2079 8 8 6.2679 0.9436 -1.2361 9 6 7.0585 2.2910 0.5185 10 8 6.7887 2.8758 1.5470 11 7 8.3148 2.3282 0.0318 12 6 9.3545 3.0750 0.7442 13 6 10.6779 2.9569 -0.0146 14 6 11.7639 3.7363 0.7297 15 6 13.0671 3.6205 -0.0180 16 1 13.1161 3.0479 -0.9324 17 6 14.1970 4.2456 0.4653 18 7 14.1374 4.9433 1.5785 19 14 15.8127 4.1014 -0.4612 20 1 15.6153 3.2675 -1.6739 21 1 16.2768 5.4543 -0.8604 22 1 16.8306 3.4674 0.4146 23 6 3.6898 -0.7377 -0.0110 24 6 2.2235 -1.1097 -0.0005 25 8 1.7947 -2.2442 0.0059 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.3309 1.6428 1.0004 30 1 1.8981 1.9385 -0.7099 31 1 4.5260 1.9589 1.1010 32 1 8.5306 1.8605 -0.7901 33 1 9.0669 4.1242 0.8112 34 1 9.4729 2.6659 1.7476 35 1 10.9656 1.9078 -0.0820 36 1 10.5592 3.3663 -1.0178 37 1 11.4762 4.7856 0.7974 38 1 11.8823 3.3266 1.7327 39 1 14.9324 5.3828 1.9187 40 1 4.2324 -1.3456 -0.7349 41 1 4.1197 -0.8530 0.9840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117334832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:27 Heat of formation + Delta-G solvation = -136.662222 kcal Electronic energy + Delta-G solvation = -22853.564235 eV Core-core repulsion = 19153.174282 eV Total energy + Delta-G solvation = -3700.389953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03330 -41.24817 -39.64084 -37.85169 -37.13069 -35.76256 -35.12195 -33.02902 -32.52719 -29.08893 -28.63880 -27.56886 -26.05167 -24.35711 -22.55367 -22.33888 -21.55943 -20.66719 -19.53971 -18.52213 -18.26655 -17.74707 -17.41441 -17.12495 -16.67506 -16.56113 -16.26337 -16.10020 -15.72297 -15.14528 -14.88789 -14.75823 -14.54827 -14.35972 -14.25708 -13.75742 -13.49582 -13.39125 -13.21685 -13.00082 -12.80104 -12.77595 -12.53486 -12.36693 -12.35895 -11.68219 -11.55157 -11.28647 -11.20259 -10.71376 -10.54455 -10.41013 -10.25753 -9.82045 -8.18806 -6.29321 0.29992 1.17611 1.40885 1.42224 1.43177 1.55757 1.95947 2.10770 2.41944 2.55462 3.15331 3.19251 3.33985 3.44067 3.73413 3.90934 4.11076 4.21379 4.36667 4.40973 4.54467 4.55455 4.63950 4.69038 4.77949 4.89363 4.89789 4.94410 5.11683 5.17424 5.25710 5.42102 5.53529 5.72936 5.85952 5.86185 5.94441 6.24038 6.32434 6.68892 6.88168 6.91138 6.99733 7.40122 8.93151 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.048872 B = 0.002000 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.793101 B =13996.141398 C =14279.243583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.618 5.618 3 C 0.103 3.897 4 C 0.139 3.861 5 H 0.118 0.882 6 N -0.677 5.677 7 C 0.523 3.477 8 O -0.531 6.531 9 C 0.502 3.498 10 O -0.545 6.545 11 N -0.687 5.687 12 C 0.128 3.872 13 C -0.107 4.107 14 C 0.024 3.976 15 C -0.541 4.541 16 H 0.064 0.936 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.166 4.166 24 C 0.514 3.486 25 O -0.579 6.579 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.425 0.575 32 H 0.419 0.581 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.067 0.933 37 H -0.003 1.003 38 H -0.004 1.004 39 H 0.263 0.737 40 H 0.104 0.896 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.841 -6.073 -4.129 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.352 5.352 3 C -0.020 4.020 4 C 0.034 3.966 5 H 0.136 0.864 6 N -0.332 5.332 7 C 0.303 3.697 8 O -0.407 6.407 9 C 0.283 3.717 10 O -0.423 6.423 11 N -0.339 5.339 12 C 0.004 3.996 13 C -0.145 4.145 14 C -0.014 4.014 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.789 3.211 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.208 4.208 24 C 0.303 3.697 25 O -0.459 6.459 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.265 0.735 32 H 0.257 0.743 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -28.068 -6.533 -4.019 29.097 hybrid contribution 1.130 0.038 -0.004 1.130 sum -26.938 -6.495 -4.024 28.000 Atomic orbital electron populations 1.21782 0.76332 1.03456 1.03822 1.48274 1.07662 1.06794 1.72423 1.22454 0.87399 0.87062 1.05084 1.21879 0.86780 0.89187 0.98765 0.86371 1.45522 1.07094 1.52010 1.28575 1.19884 0.84070 0.81030 0.84700 1.90792 1.81521 1.44417 1.23996 1.20274 0.84175 0.81992 0.85295 1.90765 1.81743 1.45399 1.24424 1.45889 1.08191 1.51354 1.28480 1.21464 0.86297 0.95977 0.95814 1.21641 0.92353 1.01170 0.99298 1.18943 0.92950 0.94533 0.94964 1.21718 0.95273 1.31467 1.09421 0.91789 1.25969 1.03139 0.94913 0.95949 1.70095 1.30397 1.34327 1.22490 0.85409 0.78887 0.77989 0.78811 1.18467 1.20561 1.20643 1.22815 0.93747 0.98230 1.05970 1.21093 0.89869 0.84281 0.74496 1.90718 1.79326 1.23115 1.52762 0.91631 0.89791 0.89653 0.87863 0.86167 0.73515 0.74311 0.91567 0.91735 0.91546 0.91410 0.98441 0.98532 0.92820 0.87757 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.14 127.77 1.42 2.04 16 2 N -0.62 -6.55 3.33 -842.88 -2.81 -9.36 16 3 C 0.10 0.47 7.07 86.83 0.61 1.08 16 4 C 0.14 1.34 3.43 46.05 0.16 1.49 16 5 H 0.12 1.23 7.72 -2.38 -0.02 1.21 16 6 N -0.68 -8.25 5.18 -438.87 -2.27 -10.52 16 7 C 0.52 10.30 7.89 87.27 0.69 10.99 16 8 O -0.53 -12.59 16.22 -3.23 -0.05 -12.65 16 9 C 0.50 12.45 7.89 87.27 0.69 13.14 16 10 O -0.55 -15.80 16.48 -3.22 -0.05 -15.85 16 11 N -0.69 -17.87 5.55 -464.41 -2.58 -20.44 16 12 C 0.13 4.05 5.67 86.38 0.49 4.54 16 13 C -0.11 -3.92 5.27 30.59 0.16 -3.76 16 14 C 0.02 1.19 4.97 29.85 0.15 1.34 16 15 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 18 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 19 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 20 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 C -0.17 -2.29 6.59 30.59 0.20 -2.09 16 24 C 0.51 9.26 8.02 87.90 0.71 9.96 16 25 O -0.58 -16.01 17.35 -3.05 -0.05 -16.06 16 26 H 0.06 0.76 7.53 -2.38 -0.02 0.74 16 27 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 28 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.10 0.14 7.77 -2.39 -0.02 0.12 16 30 H 0.12 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.43 3.92 7.84 -92.71 -0.73 3.19 16 32 H 0.42 9.72 7.94 -92.71 -0.74 8.98 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.12 1.51 8.08 -2.39 -0.02 1.49 16 Total: -1.00 -75.31 355.12 0.06 -75.25 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -0.40 Total: 10.03 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.97 Total: 9.69 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -7.37 Total: -95.81 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.16 Total: -44.56 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.31 0.06 -75.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117334832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.413 kcal (2) G-P(sol) polarization free energy of solvation -75.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds