Wall clock time and date at job start Fri Apr 10 2020 17:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47254 * 2 1 4 4 C 1.46500 * 120.00353 * 265.02214 * 3 2 1 5 5 C 1.50702 * 109.47004 * 274.75772 * 4 3 2 6 6 H 1.08005 * 119.99922 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00207 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00238 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47243 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47123 * 119.99562 * 9 7 5 12 12 H 1.48500 * 109.47153 * 239.99471 * 9 7 5 13 13 C 1.34775 * 119.99939 * 85.01925 * 3 2 1 14 14 O 1.21604 * 120.00123 * 4.10261 * 13 3 2 15 15 C 1.47435 * 120.00125 * 184.10454 * 13 3 2 16 16 C 1.41283 * 126.41318 * 325.30313 * 15 13 3 17 17 N 1.30445 * 108.02238 * 180.02562 * 16 15 13 18 18 N 1.39932 * 108.89672 * 359.97438 * 17 16 15 19 19 C 1.46502 * 125.75479 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47015 * 304.97570 * 19 18 17 21 21 H 1.08998 * 109.47095 * 54.99882 * 20 19 18 22 22 O 1.42909 * 109.47064 * 294.99978 * 20 19 18 23 23 C 1.53006 * 109.47229 * 175.00357 * 20 19 18 24 24 O 1.42897 * 109.47006 * 185.00170 * 23 20 19 25 25 C 1.34255 * 108.49193 * 0.02562 * 18 17 16 26 26 H 1.08998 * 109.46803 * 299.99664 * 1 2 3 27 27 H 1.08993 * 109.47345 * 59.99981 * 1 2 3 28 28 H 1.09000 * 109.46803 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47274 * 240.00178 * 2 1 3 30 30 H 1.08999 * 109.47637 * 120.00641 * 2 1 3 31 31 H 1.09004 * 109.47301 * 34.75249 * 4 3 2 32 32 H 1.08997 * 109.47678 * 154.75611 * 4 3 2 33 33 H 0.97000 * 120.00114 * 180.02562 * 8 7 5 34 34 H 1.07996 * 125.99038 * 0.26003 * 16 15 13 35 35 H 1.08996 * 109.47599 * 64.97468 * 19 18 17 36 36 H 1.08997 * 109.47411 * 184.97665 * 19 18 17 37 37 H 0.96701 * 113.99653 * 299.99917 * 22 20 19 38 38 H 1.09002 * 109.46595 * 304.99646 * 23 20 19 39 39 H 1.08998 * 109.47114 * 64.99854 * 23 20 19 40 40 H 0.96699 * 114.00299 * 179.97438 * 24 23 20 41 41 H 1.08005 * 126.29099 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3663 2.0351 -1.2639 5 6 3.7863 1.6912 -1.6331 6 1 4.3712 1.0500 -0.9903 7 6 4.3392 2.1960 -2.7909 8 7 3.6272 2.9772 -3.5734 9 14 6.0996 1.7702 -3.2482 10 1 6.6795 0.8808 -2.2099 11 1 6.1159 1.0748 -4.5602 12 1 6.9028 3.0161 -3.3383 13 6 2.1474 2.0503 1.1628 14 8 1.9302 1.4846 2.2171 15 6 2.5520 3.4680 1.1565 16 6 3.4484 4.0804 0.2524 17 7 3.5473 5.3408 0.5734 18 7 2.7305 5.5916 1.6816 19 6 2.5633 6.8865 2.3462 20 6 3.9329 7.4268 2.7623 21 1 4.5876 7.4664 1.8918 22 8 4.5046 6.5661 3.7496 23 6 3.7713 8.8329 3.3436 24 8 5.0599 9.3832 3.6242 25 6 2.1260 4.4456 2.0331 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6932 1.6903 -2.0489 32 1 2.2713 3.1152 -1.1524 33 1 4.0160 3.3320 -4.3881 34 1 3.9591 3.5915 -0.5641 35 1 2.0889 7.5884 1.6604 36 1 1.9375 6.7631 3.2301 37 1 3.9741 6.4833 4.5539 38 1 3.2547 9.4667 2.6228 39 1 3.1900 8.7810 4.2641 40 1 5.0341 10.2756 3.9957 41 1 1.4331 4.3130 2.8510 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118634801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:41 Heat of formation + Delta-G solvation = -52.907263 kcal Electronic energy + Delta-G solvation = -24495.908571 eV Core-core repulsion = 20799.150505 eV Total energy + Delta-G solvation = -3696.758065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.86751 -38.73425 -38.18823 -36.12436 -35.10252 -33.30216 -32.73067 -30.72475 -30.14527 -29.07760 -27.02825 -25.93556 -23.22226 -22.98873 -22.27915 -20.90439 -20.38884 -18.54766 -17.76982 -17.08491 -16.49912 -16.49372 -16.21010 -15.51387 -15.42768 -15.13172 -14.40978 -14.16114 -13.82843 -13.66892 -13.52039 -13.17909 -12.99110 -12.73890 -12.43666 -12.30883 -12.10448 -11.80550 -11.54102 -11.24344 -11.08757 -10.90537 -10.69959 -10.52136 -10.40765 -10.34398 -10.32021 -10.03205 -9.69340 -9.00222 -8.92653 -8.55789 -8.02981 -7.59315 -6.18355 -4.27177 2.10078 2.65886 3.03941 3.25471 3.34865 3.39576 3.69597 3.97978 4.10260 4.18222 4.39084 4.50888 4.66778 4.74943 4.79816 4.98836 5.11415 5.12555 5.18329 5.49171 5.68035 5.80864 5.90439 5.92261 5.96145 6.12898 6.34236 6.40563 6.58589 6.71813 6.87612 7.21335 7.27767 7.28835 7.35558 7.46218 7.66128 7.77957 8.07739 8.21023 8.45864 8.83864 9.16416 9.41153 10.86355 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.004741 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.025909 B = 5904.768832 C = 7465.336973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.118 3.882 3 N -0.590 5.590 4 C 0.228 3.772 5 C -0.542 4.542 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.893 3.107 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.593 3.407 14 O -0.582 6.582 15 C -0.273 4.273 16 C 0.103 3.897 17 N -0.309 5.309 18 N -0.370 5.370 19 C 0.108 3.892 20 C 0.094 3.906 21 H 0.122 0.878 22 O -0.540 6.540 23 C 0.048 3.952 24 O -0.560 6.560 25 C 0.101 3.899 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.266 0.734 34 H 0.225 0.775 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.368 0.632 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.379 0.621 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 10.124 11.289 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 N -0.320 5.320 4 C 0.108 3.892 5 C -0.581 4.581 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.720 3.280 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.382 3.618 14 O -0.465 6.465 15 C -0.288 4.288 16 C -0.084 4.084 17 N -0.128 5.128 18 N -0.150 5.150 19 C -0.015 4.015 20 C 0.034 3.966 21 H 0.140 0.860 22 O -0.344 6.344 23 C -0.031 4.031 24 O -0.365 6.365 25 C -0.049 4.049 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.241 0.759 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.215 0.785 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.226 0.774 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.386 10.550 10.708 15.659 hybrid contribution -0.225 -0.228 0.309 0.445 sum -4.610 10.322 11.017 15.786 Atomic orbital electron populations 1.22111 0.97073 1.01109 1.01832 1.21197 0.93160 0.83721 1.02466 1.48030 1.62716 1.13122 1.08117 1.19711 0.95674 0.94352 0.79477 1.21595 0.97994 1.31293 1.07198 0.91666 1.24974 0.98234 0.94681 0.95791 1.69941 1.36765 1.32013 1.13337 0.86504 0.84360 0.78596 0.78543 1.19452 1.20824 1.20599 1.17288 0.76274 0.84931 0.83340 1.90646 1.54548 1.69808 1.31451 1.20292 1.10060 0.95413 1.02987 1.25541 0.95186 0.89731 0.97954 1.77212 1.15191 1.18699 1.01746 1.48159 1.35134 1.07051 1.24610 1.22180 0.98062 0.83464 0.97754 1.22283 0.94473 0.86715 0.93110 0.86007 1.86795 1.50625 1.68018 1.28917 1.22814 0.85675 0.95351 0.99248 1.86590 1.28142 1.35342 1.86427 1.22621 0.97901 0.85627 0.98718 0.92864 0.92714 0.92499 0.90278 0.91312 0.94940 0.93249 0.92404 0.75904 0.88752 0.88472 0.78549 0.92330 0.93145 0.77414 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.20 37.16 0.38 -2.27 16 2 C 0.12 2.25 6.13 -4.05 -0.02 2.23 16 3 N -0.59 -12.97 2.47 -176.33 -0.43 -13.40 16 4 C 0.23 5.46 4.66 -5.19 -0.02 5.44 16 5 C -0.54 -13.89 7.28 -34.44 -0.25 -14.14 16 6 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.07 1.75 5.27 -17.82 -0.09 1.66 16 8 N -0.88 -23.88 13.29 55.43 0.74 -23.15 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.59 13.29 7.56 -12.52 -0.09 13.19 16 14 O -0.58 -13.81 16.69 5.27 0.09 -13.72 16 15 C -0.27 -5.71 5.46 -105.07 -0.57 -6.28 16 16 C 0.10 2.27 9.56 -16.98 -0.16 2.11 16 17 N -0.31 -6.30 12.24 30.86 0.38 -5.92 16 18 N -0.37 -5.94 3.60 -60.81 -0.22 -6.16 16 19 C 0.11 1.11 6.13 -4.04 -0.02 1.09 16 20 C 0.09 1.07 3.36 -26.73 -0.09 0.98 16 21 H 0.12 1.79 8.04 -51.93 -0.42 1.38 16 22 O -0.54 -7.12 13.25 -40.08 -0.53 -7.65 16 23 C 0.05 0.37 6.68 37.16 0.25 0.62 16 24 O -0.56 -5.39 13.62 -40.08 -0.55 -5.94 16 25 C 0.10 1.71 11.40 -16.56 -0.19 1.52 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 30 H 0.07 1.32 7.52 -51.93 -0.39 0.93 16 31 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.05 1.24 4.93 -51.93 -0.26 0.98 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.23 5.48 4.59 -52.49 -0.24 5.24 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.64 8.06 -51.93 -0.42 0.22 16 37 H 0.37 3.12 9.05 45.56 0.41 3.54 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.38 1.67 9.12 45.56 0.42 2.08 16 41 H 0.17 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -34.55 350.17 -5.41 -39.96 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.24 Total: 9.10 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.90 Total: 6.12 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.46 Total: -48.63 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.99 Total: -27.31 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.55 -5.41 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118634801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.944 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds