Wall clock time and date at job start Fri Apr 10 2020 17:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 120.00134 * 2 1 4 4 H 1.48498 * 109.47367 * 270.00199 * 3 2 1 5 5 H 1.48504 * 109.47110 * 29.99834 * 3 2 1 6 6 H 1.48495 * 109.47018 * 149.99869 * 3 2 1 7 7 C 1.38943 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00340 * 359.97438 * 7 2 1 9 9 N 1.37100 * 120.00117 * 180.02562 * 7 2 1 10 10 C 1.34772 * 120.00199 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99920 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00172 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47280 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.46983 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99566 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.52992 * 109.47482 * 179.97438 * 20 19 17 22 22 C 1.53778 * 113.61727 * 274.13766 * 21 20 19 23 23 C 1.53956 * 87.02468 * 220.04570 * 22 21 20 24 24 C 1.53784 * 113.61658 * 176.52792 * 21 20 19 25 25 H 0.97010 * 119.99388 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99465 * 359.97438 * 9 7 2 27 27 H 1.08995 * 109.47029 * 60.00037 * 12 10 9 28 28 H 1.09003 * 109.46949 * 299.99857 * 12 10 9 29 29 H 1.00898 * 110.99612 * 303.95183 * 13 12 10 30 30 H 1.09001 * 109.46901 * 59.99571 * 14 13 12 31 31 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 32 32 H 1.09001 * 109.46832 * 59.99813 * 15 14 13 33 33 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 34 34 H 0.96995 * 120.00423 * 359.97438 * 16 15 14 35 35 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 36 36 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 37 37 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 38 38 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 39 39 H 1.09000 * 112.84915 * 45.33452 * 21 20 19 40 40 H 1.08996 * 113.61184 * 334.56845 * 22 21 20 41 41 H 1.09000 * 113.61578 * 105.46835 * 22 21 20 42 42 H 1.09002 * 113.53647 * 270.81670 * 23 22 21 43 43 H 1.08996 * 113.66740 * 139.92974 * 23 22 21 44 44 H 1.08998 * 113.61407 * 254.52625 * 24 21 20 45 45 H 1.08996 * 113.61156 * 25.35491 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5606 -2.3707 0.0000 13 7 6.0503 -3.7557 -0.0006 14 6 7.5187 -3.7949 0.0000 15 6 7.9900 -5.2505 -0.0001 16 7 9.4545 -5.2896 -0.0001 17 6 10.0969 -6.4744 -0.0006 18 8 9.4627 -7.5082 -0.0006 19 6 11.6034 -6.5147 -0.0001 20 6 12.0747 -7.9702 -0.0002 21 6 13.6041 -8.0112 -0.0003 22 6 14.2226 -7.9259 -1.4056 23 6 15.2412 -8.9795 -0.9338 24 6 14.1823 -9.4336 0.0849 25 1 -0.4850 0.8402 -0.0004 26 1 3.8648 -0.3633 0.0004 27 1 5.9240 -1.8569 0.8899 28 1 5.9240 -1.8569 -0.8900 29 1 5.6748 -4.2723 0.7805 30 1 7.8953 -3.2915 0.8904 31 1 7.8960 -3.2905 -0.8896 32 1 7.6134 -5.7543 -0.8903 33 1 7.6128 -5.7546 0.8897 34 1 9.9618 -4.4629 -0.0005 35 1 11.9807 -6.0102 -0.8896 36 1 11.9800 -6.0113 0.8904 37 1 11.6975 -8.4744 0.8895 38 1 11.6981 -8.4741 -0.8904 39 1 14.0461 -7.3167 0.7141 40 1 13.5613 -8.2811 -2.1959 41 1 14.6677 -6.9562 -1.6287 42 1 16.1317 -8.5494 -0.4755 43 1 15.4731 -9.7321 -1.6874 44 1 14.5950 -9.6793 1.0634 45 1 13.5095 -10.2019 -0.2959 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125380385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:51 Heat of formation + Delta-G solvation = -65.253684 kcal Electronic energy + Delta-G solvation = -22464.566080 eV Core-core repulsion = 18903.105728 eV Total energy + Delta-G solvation = -3561.460352 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.10293 -39.09446 -38.51672 -36.41714 -34.42045 -33.81597 -33.11018 -31.68391 -29.66510 -27.09315 -26.04669 -25.70630 -23.74923 -22.52945 -22.01958 -20.47258 -19.82012 -19.41927 -18.39896 -17.29334 -16.38370 -16.30468 -16.06106 -15.82717 -15.61862 -15.04436 -14.86367 -14.51327 -14.15477 -13.83774 -13.58767 -13.37571 -13.14166 -13.07077 -12.84452 -12.63403 -12.37809 -12.24769 -11.91178 -11.77905 -11.59728 -11.51112 -11.36747 -11.16817 -10.96501 -10.64276 -10.61542 -10.51122 -10.02128 -9.98454 -9.59209 -9.27713 -8.64723 -8.25952 -8.19015 -6.32404 -3.84073 2.44747 2.86472 3.00324 3.05249 3.13531 3.71246 4.07789 4.11061 4.17870 4.23012 4.30552 4.44228 4.51408 4.74010 4.78019 4.81534 4.88870 5.01957 5.13980 5.20280 5.23342 5.28933 5.30767 5.35900 5.37465 5.49984 5.51788 5.54533 5.67386 5.73904 5.77412 5.84113 5.86977 5.91645 5.92690 6.12720 6.19779 6.95894 7.25244 7.46110 7.56333 8.01764 8.12874 8.57931 8.93432 9.40576 9.80414 10.80675 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.053798 B = 0.001691 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.342362 B =16556.121960 C =16929.403889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.563 6.563 12 C 0.050 3.950 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.119 3.881 16 N -0.732 5.732 17 C 0.509 3.491 18 O -0.538 6.538 19 C -0.138 4.138 20 C -0.095 4.095 21 C -0.112 4.112 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.138 4.138 25 H 0.273 0.727 26 H 0.370 0.630 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.354 0.646 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.399 0.601 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.056 -8.600 0.363 33.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.229 5.229 10 C 0.234 3.766 11 O -0.445 6.445 12 C -0.083 4.083 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.005 4.005 16 N -0.384 5.384 17 C 0.296 3.704 18 O -0.415 6.415 19 C -0.178 4.178 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.177 4.177 23 C -0.182 4.182 24 C -0.175 4.175 25 H 0.084 0.916 26 H 0.203 0.797 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.174 0.826 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.233 0.767 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 30.886 -10.019 -0.315 32.472 hybrid contribution 0.963 2.287 0.917 2.646 sum 31.849 -7.733 0.602 32.780 Atomic orbital electron populations 1.69629 1.05648 1.27501 1.49265 1.25040 0.95495 0.97973 0.97622 0.86660 0.79710 0.84029 0.78892 1.19590 1.20178 1.19570 1.19445 0.79222 0.96686 1.48130 0.86247 1.42193 1.07550 1.06115 1.67068 1.19673 0.88126 0.84618 0.84164 1.90580 1.69373 1.30917 1.53620 1.21702 0.95226 0.89971 1.01396 1.59931 1.05065 1.13104 1.51789 1.22081 0.89531 0.95457 1.00951 1.21273 0.78924 0.96870 1.03457 1.45970 1.07690 1.08658 1.76111 1.20779 0.90531 0.83312 0.75804 1.90732 1.68865 1.32953 1.48904 1.21675 0.91636 1.00212 1.04306 1.21333 0.93772 0.94471 1.03672 1.22594 0.94960 0.97768 0.97749 1.23037 0.98445 0.99330 0.96878 1.22843 0.97165 0.99032 0.99150 1.22935 0.98242 0.96802 0.99557 0.91595 0.79689 0.93607 0.89337 0.82619 0.94933 0.90466 0.90201 0.91370 0.76698 0.88903 0.89011 0.91045 0.91011 0.89279 0.90001 0.91618 0.90357 0.91566 0.91602 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.18 27.74 -169.99 -4.71 14.46 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 7 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.49 16 9 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 10 C 0.45 10.11 7.82 -10.99 -0.09 10.02 16 11 O -0.56 -15.18 15.78 5.54 0.09 -15.10 16 12 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 13 N -0.67 -9.98 6.13 -115.06 -0.70 -10.69 16 14 C 0.05 0.52 5.80 -3.83 -0.02 0.50 16 15 C 0.12 1.30 5.93 -4.04 -0.02 1.27 16 16 N -0.73 -6.23 5.56 -60.30 -0.33 -6.56 16 17 C 0.51 5.15 7.83 -10.98 -0.09 5.06 16 18 O -0.54 -7.94 15.98 5.56 0.09 -7.85 16 19 C -0.14 -0.86 5.70 -27.88 -0.16 -1.02 16 20 C -0.09 -0.68 4.33 -26.74 -0.12 -0.80 16 21 C -0.11 -0.62 3.64 -89.81 -0.33 -0.95 16 22 C -0.14 -0.74 7.65 -25.83 -0.20 -0.93 16 23 C -0.14 -0.74 8.09 -25.82 -0.21 -0.95 16 24 C -0.14 -0.78 7.65 -25.91 -0.20 -0.98 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.35 5.56 8.43 -39.29 -0.33 5.22 16 30 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.40 2.12 8.47 -40.82 -0.35 1.77 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.07 0.61 7.83 -51.93 -0.41 0.21 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -34.94 373.35 -8.56 -43.50 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.62 Total: 11.29 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.70 Total: 4.23 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.32 Total: -56.16 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.18 Total: -22.95 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.94 -8.56 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125380385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.753 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds